Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119717123

Identifier: 119717123

GI number: 119717123

Start: 3082720

End: 3083442

Strand: Reverse

Name: 119717123

Synonym: Noca_2899

Alternate gene names: NA

Gene position: 3083442-3082720 (Counterclockwise)

Preceding gene: 119717124

Following gene: 119717122

Centisome position: 61.84

GC content: 68.05

Gene sequence:

>723_bases
ATGATCGTCCTGCCCGCAATGCCGCCCGAGCAGACAGCCTCGTGGTGGGGGATCCTCGACCTCCACGAGCGGCTCGCCGA
GGGCTGGACGCTGATCGGCGGCCAGCTCGTCCACTTGCACTGCGCTGAGCGGGGGCAGTTCCTGGTGCGACCGACGAACG
ACGCCGACACAGTCATCGACGTACGGGCCGACCCAACGATGCTCGCCACCTTTACCGAGACCCTGACCGACCTCGGGTTC
AGATCAGCCGGCATCTCGGCGGAGGGTCTCCAACATCGTTGGGTTCGCGGCAAGGCATCGATCGACGTGCTGCTTCCGGA
CGGGATCGGCGAGCGAGCCAGCCTTCGCCAAGGCGTCACGGGTAGTCCGACACTCCCGACCGCAGGTGGGACTCAAGCGC
TGCAGCGCAGCGAGACCGTCCGGGTGTCGGTCGCGGGTCGCGAAGGATCCGTACGCCGGCCCAACCTCGTCGGCGCACTG
GTCGGTAAGGCGGCAGCGCTCAGCAACGCGGGGGACCCTGGCCTCGGTCGGCACAGGCGCGACTTCGTCGTCCTCGCTGG
GTTGCTCACAGCCCGCGACTTCCGGAACCAAGAGCTCACGAGGAAGGACCGCCGGCGGCTGCGCGCCATGGTCACCGCGG
TCGGGAAGGACCGGACGCTGCTGATCGAGATCCCGGATGTCCAGATCTCGCTCGATCGGCTCATCACGGCGGGGGAGTTG
TAG

Upstream 100 bases:

>100_bases
GGCTCGCGGCCGATCTCGCCGAGCATCGCGGGCCACGCGAGGAGGCACGTGCAGCGCAGCTGCTGCACGAGCTGGCCGTG
GGGTGGAAGGCTGCGGATCG

Downstream 100 bases:

>100_bases
TCATGCCGGAGGACTTCGTTGTCGAGTTGCAGCGAAGATTGATGACCCGCCCGCGGGGCAAGTTGGCGAGATCGGTGGAC
CGGTGACTGGTCGTCAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIVLPAMPPEQTASWWGILDLHERLAEGWTLIGGQLVHLHCAERGQFLVRPTNDADTVIDVRADPTMLATFTETLTDLGF
RSAGISAEGLQHRWVRGKASIDVLLPDGIGERASLRQGVTGSPTLPTAGGTQALQRSETVRVSVAGREGSVRRPNLVGAL
VGKAAALSNAGDPGLGRHRRDFVVLAGLLTARDFRNQELTRKDRRRLRAMVTAVGKDRTLLIEIPDVQISLDRLITAGEL

Sequences:

>Translated_240_residues
MIVLPAMPPEQTASWWGILDLHERLAEGWTLIGGQLVHLHCAERGQFLVRPTNDADTVIDVRADPTMLATFTETLTDLGF
RSAGISAEGLQHRWVRGKASIDVLLPDGIGERASLRQGVTGSPTLPTAGGTQALQRSETVRVSVAGREGSVRRPNLVGAL
VGKAAALSNAGDPGLGRHRRDFVVLAGLLTARDFRNQELTRKDRRRLRAMVTAVGKDRTLLIEIPDVQISLDRLITAGEL
>Mature_240_residues
MIVLPAMPPEQTASWWGILDLHERLAEGWTLIGGQLVHLHCAERGQFLVRPTNDADTVIDVRADPTMLATFTETLTDLGF
RSAGISAEGLQHRWVRGKASIDVLLPDGIGERASLRQGVTGSPTLPTAGGTQALQRSETVRVSVAGREGSVRRPNLVGAL
VGKAAALSNAGDPGLGRHRRDFVVLAGLLTARDFRNQELTRKDRRRLRAMVTAVGKDRTLLIEIPDVQISLDRLITAGEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25987; Mature: 25987

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLPAMPPEQTASWWGILDLHERLAEGWTLIGGQLVHLHCAERGQFLVRPTNDADTVID
CEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCEEEEEEECCCCCEEEEECCCCCCEEE
VRADPTMLATFTETLTDLGFRSAGISAEGLQHRWVRGKASIDVLLPDGIGERASLRQGVT
ECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCCEEEEEECCCCCCHHHHHCCCC
GSPTLPTAGGTQALQRSETVRVSVAGREGSVRRPNLVGALVGKAAALSNAGDPGLGRHRR
CCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH
DFVVLAGLLTARDFRNQELTRKDRRRLRAMVTAVGKDRTLLIEIPDVQISLDRLITAGEL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHCCCCC
>Mature Secondary Structure
MIVLPAMPPEQTASWWGILDLHERLAEGWTLIGGQLVHLHCAERGQFLVRPTNDADTVID
CEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCEEEEEEECCCCCEEEEECCCCCCEEE
VRADPTMLATFTETLTDLGFRSAGISAEGLQHRWVRGKASIDVLLPDGIGERASLRQGVT
ECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCCEEEEEECCCCCCHHHHHCCCC
GSPTLPTAGGTQALQRSETVRVSVAGREGSVRRPNLVGALVGKAAALSNAGDPGLGRHRR
CCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH
DFVVLAGLLTARDFRNQELTRKDRRRLRAMVTAVGKDRTLLIEIPDVQISLDRLITAGEL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA