| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is serB [H]
Identifier: 119716800
GI number: 119716800
Start: 2740788
End: 2742050
Strand: Reverse
Name: serB [H]
Synonym: Noca_2574
Alternate gene names: 119716800
Gene position: 2742050-2740788 (Counterclockwise)
Preceding gene: 119716801
Following gene: 119716795
Centisome position: 55.0
GC content: 72.84
Gene sequence:
>1263_bases ATGAGGTCGGCCGCCGCGATAGCCTCGGCGACTGACATGACTAACGCGCAGGCCGGCCGCAAGCCGGAGACCCTCCTCAT CACGCTGACCGGCAAGGACCGCCCCGGCGTGACGTCCTCGGTGTTCGCCACGCTCTCCGGGGCCGGCGTGGAGGTCGTCG ACATCGAGCAGATCGTGCTGCGCGGCCGGCTCATCCTCGGCGTCCTCGTCACCGCACCCCACCACCCGCGCCGGGTGACG GAGGCGGTCCAGGAGACTGCGGCGGCCCTCGGCATGAGCGTGGACGTCGAGCGGGGCGTGGGCGACAACAAGGCGCGGCG GGGCGGCCGCTCGCACGTGACGATCATCGGCTCCCCGCTGCGAGCTGCGGCGATGGGCGCGATCGCCGGCCGGATCGCCG ACGCCGGCGCCAACATCGACCGGATCGAGCGGATGGCCCGCTACCCGGTCACGGCGATCGACCTGCACGTCTCCGGGGTC GACACCGCGGCGCTGCGCACCGTGCTCGCAGCCGAGGCGTCCCGGCAGGGCGTCGACATCGCGGTGCAGCCGGCGAACCT CCTGCGGCGAGGTGCCCGCCTGATCGTGATGGACGTCGACTCCACCCTGATCCAGGGCGAGGTGATCGAGATGCTGGCCG CGCACGCCGGGTGCGAGGCGGAGGTCGCGCGGGTCACCGAGGCCGCGATGCGCGGTGAGATCGACTTCGAGGCCTCGCTG CGAGCGCGAGTGGCCCTGCTCGAAGGAGTCCCGGCGAGCGCGCTCGACGAGGTGTACGACGCCATCCTGCTCGCCCCCGG CGCGCGCACGATGGTGCGCACCCTGCGCCGGCTCGGCTACCACTTCGCGATCGTCTCCGGAGGGTTCAGCCAGATCACCG ACCGGCTGGCCACCGACCTCGGCATCGACTACTCCCGGGCCAACGAGCTGGAGATCGTCGACGGACGCCTGACGGGCCGG ATCGTCGGTCCGGTCGTCGACCGCGCCGGCAAGGCCGCTGCGCTGCGGGAGTTCGCGGCCACCGCGGGCGTCGCGGAGGC CGCGGTGATCGCCATCGGCGACGGCGCCAACGACCTGGACATGCTCAACGCGGCGGGCCTCGGCATCGCCTACAACGCGA AGCCGCTGGTGCGCGACGCCGCCGACACCGCGGTGAACGTGCCCTACCTCGACGCGATCCTCTATCTCCTCGGCATCTCC CGCGAGGAGATCGAGGCCGCCGACGCCGAGGCGGGCTTCGTCACCCCGGCACCGCCGGTCTGA
Upstream 100 bases:
>100_bases CGTACGAGATCGCGGAGCGCCGCGGTGCCCTGGTGTCGCTCGCGCGCGCTGGCCGGCGGGCCCTGGTAGCGGCCTGCTCA CCGGAGGCGTGGCCTCCGGC
Downstream 100 bases:
>100_bases GGTCCGGGCCGGGCGTCAGCCGCGGCCGACGTGGAAGGCCACGAGGCGGGCGCTGGCGCCGGCGAGATCGGCCCAGGCGC CGTCGTACTCGAAGACCGCC
Product: phosphoserine phosphatase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MRSAAAIASATDMTNAQAGRKPETLLITLTGKDRPGVTSSVFATLSGAGVEVVDIEQIVLRGRLILGVLVTAPHHPRRVT EAVQETAAALGMSVDVERGVGDNKARRGGRSHVTIIGSPLRAAAMGAIAGRIADAGANIDRIERMARYPVTAIDLHVSGV DTAALRTVLAAEASRQGVDIAVQPANLLRRGARLIVMDVDSTLIQGEVIEMLAAHAGCEAEVARVTEAAMRGEIDFEASL RARVALLEGVPASALDEVYDAILLAPGARTMVRTLRRLGYHFAIVSGGFSQITDRLATDLGIDYSRANELEIVDGRLTGR IVGPVVDRAGKAAALREFAATAGVAEAAVIAIGDGANDLDMLNAAGLGIAYNAKPLVRDAADTAVNVPYLDAILYLLGIS REEIEAADAEAGFVTPAPPV
Sequences:
>Translated_420_residues MRSAAAIASATDMTNAQAGRKPETLLITLTGKDRPGVTSSVFATLSGAGVEVVDIEQIVLRGRLILGVLVTAPHHPRRVT EAVQETAAALGMSVDVERGVGDNKARRGGRSHVTIIGSPLRAAAMGAIAGRIADAGANIDRIERMARYPVTAIDLHVSGV DTAALRTVLAAEASRQGVDIAVQPANLLRRGARLIVMDVDSTLIQGEVIEMLAAHAGCEAEVARVTEAAMRGEIDFEASL RARVALLEGVPASALDEVYDAILLAPGARTMVRTLRRLGYHFAIVSGGFSQITDRLATDLGIDYSRANELEIVDGRLTGR IVGPVVDRAGKAAALREFAATAGVAEAAVIAIGDGANDLDMLNAAGLGIAYNAKPLVRDAADTAVNVPYLDAILYLLGIS REEIEAADAEAGFVTPAPPV >Mature_420_residues MRSAAAIASATDMTNAQAGRKPETLLITLTGKDRPGVTSSVFATLSGAGVEVVDIEQIVLRGRLILGVLVTAPHHPRRVT EAVQETAAALGMSVDVERGVGDNKARRGGRSHVTIIGSPLRAAAMGAIAGRIADAGANIDRIERMARYPVTAIDLHVSGV DTAALRTVLAAEASRQGVDIAVQPANLLRRGARLIVMDVDSTLIQGEVIEMLAAHAGCEAEVARVTEAAMRGEIDFEASL RARVALLEGVPASALDEVYDAILLAPGARTMVRTLRRLGYHFAIVSGGFSQITDRLATDLGIDYSRANELEIVDGRLTGR IVGPVVDRAGKAAALREFAATAGVAEAAVIAIGDGANDLDMLNAAGLGIAYNAKPLVRDAADTAVNVPYLDAILYLLGIS REEIEAADAEAGFVTPAPPV
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=216, Percent_Identity=28.7037037037037, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1790849, Length=192, Percent_Identity=48.9583333333333, Blast_Score=168, Evalue=7e-43, Organism=Caenorhabditis elegans, GI115534454, Length=181, Percent_Identity=32.5966850828729, Blast_Score=65, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115534456, Length=181, Percent_Identity=32.5966850828729, Blast_Score=65, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6321647, Length=233, Percent_Identity=41.2017167381974, Blast_Score=185, Evalue=1e-47, Organism=Drosophila melanogaster, GI24661601, Length=185, Percent_Identity=28.1081081081081, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 43711; Mature: 43711
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSAAAIASATDMTNAQAGRKPETLLITLTGKDRPGVTSSVFATLSGAGVEVVDIEQIVL CCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEHHHHHH RGRLILGVLVTAPHHPRRVTEAVQETAAALGMSVDVERGVGDNKARRGGRSHVTIIGSPL HHHHHEEHEECCCCCHHHHHHHHHHHHHHHCCCEEHHCCCCCCHHHCCCCCEEEEEECCH RAAAMGAIAGRIADAGANIDRIERMARYPVTAIDLHVSGVDTAALRTVLAAEASRQGVDI HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEE AVQPANLLRRGARLIVMDVDSTLIQGEVIEMLAAHAGCEAEVARVTEAAMRGEIDFEASL EEECHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH RARVALLEGVPASALDEVYDAILLAPGARTMVRTLRRLGYHFAIVSGGFSQITDRLATDL HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC GIDYSRANELEIVDGRLTGRIVGPVVDRAGKAAALREFAATAGVAEAAVIAIGDGANDLD CCCCCCCCCEEEECCCCCCEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHH MLNAAGLGIAYNAKPLVRDAADTAVNVPYLDAILYLLGISREEIEAADAEAGFVTPAPPV HHHHCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MRSAAAIASATDMTNAQAGRKPETLLITLTGKDRPGVTSSVFATLSGAGVEVVDIEQIVL CCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEHHHHHH RGRLILGVLVTAPHHPRRVTEAVQETAAALGMSVDVERGVGDNKARRGGRSHVTIIGSPL HHHHHEEHEECCCCCHHHHHHHHHHHHHHHCCCEEHHCCCCCCHHHCCCCCEEEEEECCH RAAAMGAIAGRIADAGANIDRIERMARYPVTAIDLHVSGVDTAALRTVLAAEASRQGVDI HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEE AVQPANLLRRGARLIVMDVDSTLIQGEVIEMLAAHAGCEAEVARVTEAAMRGEIDFEASL EEECHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH RARVALLEGVPASALDEVYDAILLAPGARTMVRTLRRLGYHFAIVSGGFSQITDRLATDL HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC GIDYSRANELEIVDGRLTGRIVGPVVDRAGKAAALREFAATAGVAEAAVIAIGDGANDLD CCCCCCCCCEEEECCCCCCEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHH MLNAAGLGIAYNAKPLVRDAADTAVNVPYLDAILYLLGISREEIEAADAEAGFVTPAPPV HHHHCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA