Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689705
Identifier: 116689705
GI number: 116689705
Start: 1871247
End: 1872506
Strand: Direct
Name: 116689705
Synonym: Bcen2424_1683
Alternate gene names: NA
Gene position: 1871247-1872506 (Clockwise)
Preceding gene: 116689703
Following gene: 116689706
Centisome position: 53.71
GC content: 62.7
Gene sequence:
>1260_bases ATGCCACGCAAACGCAAGGAAGAAGTGACGATAGAACCGGGCAAGGGCTTGAACCTGGACCCCGAGCTGATCAAGCAACT GGTGCCCGGGACGCTGAACCGGGCGACGATCAACGAGCAGCTTGCGGCGCTCAAGAAGGCAATCTTCGAACGCGCGCTGG GCGGCGAACTGACCCACCACCTCGGCTACGAGAAGGGCGATGCCAAGCCGGCAGGCCGCACGAACCACCGCAACGGCACC AGCCGCAAGCGCATCACGACCGACGACGACCTGCTCGACGTCGAGATTCCGCGCGACCGCGAAGGCACCTTCGATCCGGT GCTGATCGCCAAGGGCGAGCGACGCTTCACCGGCTTTGACGACAAGATCATCGCGATGTACGCACGCGGCATGAGCGTGC GGGAGATTCAGGGTTTCCTGCTGGAGATGTACGGCATCGAGGTGTCGCCGGACTTCATCAGTACGGTGACCGATTCCGTG ATCGACGAAGTGCGCGAATGGCAGCAGCGGCCGCTCGAGCCGATGTACCCGGTCGTGTTCTTCGACGCCTTGCGAGTCAA GATCCGCGACGAAGGCGTCGTGCGCAACAAAGCGATCTACCTGGCGCTGGGCGTGCGCCGCGACGGCACACGCGACGTGT TGGGCCTTTGGATCGAGCAGACCGAGGGGGCCAAGTTCTGGCTGAGGGTAGTGAACGACCTTAAGCTGCGCGGCGTGCAG GATATCCTGATCGCCGTGGTCGACGGCCTGAAGGGCTTCCCGGAAGCGATCAACACGGTGTTCCCGGAAACGACGGTCCA GACCTGCATCGTGCATCTGATCCGGAACTCACTGGACTTCGCCAGCTGGAAAGACAGGAAATCGGTCGCAGCGGCGCTCA AGGAGGTCTATCGGGCACCGTCGGCCGAAGCGGCCGCCGTGGCGCTGGACGCGTTCGATACGAGCCCGTGGGGTGCGAAA TACCCTCCGATCGCCGCGCTCTGGCGCCGAGCCTGGGATCAGGTGATTCCGTTCTACGCCTTCGCGCCTGACATCCGGAA AATTGTATATACGACCAACGCGATCGAGTCGCTGCACATGCAGCTTCGGAAGATCATCAAGGCGCGCGGCCACTTCCCGT CGGACGAGGCCGCGCTCAAACTGATCTGGCTGGCGCTGCGCAACGTCGTGGCCAAGTGGACTGGCTCCCGGCACGATTGG AAGAGCGCGATGACGCAGTTCGCACTGCTTTACCCGGAACGATTCAACATTGGAGTCTGA
Upstream 100 bases:
>100_bases CGCCGCTCACGGTGCCGCAAGACACGGCGGGCAACGTATCTCCGGAGCCTATCCGAATGTTTGTGTGTGAGGCATAAACT GATGGCCAAGGAGCCACGTT
Downstream 100 bases:
>100_bases ATCTCAACCCGCCTCACACACGGAATTCCGGATACCTCCTATCTCCGGCGGCCGCCGGACCGCATACGGCCCGACGGGTT CCGCCTCCCACCGAGATACG
Product: transposase, mutator type
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MPRKRKEEVTIEPGKGLNLDPELIKQLVPGTLNRATINEQLAALKKAIFERALGGELTHHLGYEKGDAKPAGRTNHRNGT SRKRITTDDDLLDVEIPRDREGTFDPVLIAKGERRFTGFDDKIIAMYARGMSVREIQGFLLEMYGIEVSPDFISTVTDSV IDEVREWQQRPLEPMYPVVFFDALRVKIRDEGVVRNKAIYLALGVRRDGTRDVLGLWIEQTEGAKFWLRVVNDLKLRGVQ DILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAPSAEAAAVALDAFDTSPWGAK YPPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHMQLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDW KSAMTQFALLYPERFNIGV
Sequences:
>Translated_419_residues MPRKRKEEVTIEPGKGLNLDPELIKQLVPGTLNRATINEQLAALKKAIFERALGGELTHHLGYEKGDAKPAGRTNHRNGT SRKRITTDDDLLDVEIPRDREGTFDPVLIAKGERRFTGFDDKIIAMYARGMSVREIQGFLLEMYGIEVSPDFISTVTDSV IDEVREWQQRPLEPMYPVVFFDALRVKIRDEGVVRNKAIYLALGVRRDGTRDVLGLWIEQTEGAKFWLRVVNDLKLRGVQ DILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAPSAEAAAVALDAFDTSPWGAK YPPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHMQLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDW KSAMTQFALLYPERFNIGV >Mature_418_residues PRKRKEEVTIEPGKGLNLDPELIKQLVPGTLNRATINEQLAALKKAIFERALGGELTHHLGYEKGDAKPAGRTNHRNGTS RKRITTDDDLLDVEIPRDREGTFDPVLIAKGERRFTGFDDKIIAMYARGMSVREIQGFLLEMYGIEVSPDFISTVTDSVI DEVREWQQRPLEPMYPVVFFDALRVKIRDEGVVRNKAIYLALGVRRDGTRDVLGLWIEQTEGAKFWLRVVNDLKLRGVQD ILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAPSAEAAAVALDAFDTSPWGAKY PPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHMQLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDWK SAMTQFALLYPERFNIGV
Specific function: Required for the transposition of the insertion element [H]
COG id: COG3328
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 47448; Mature: 47317
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKRKEEVTIEPGKGLNLDPELIKQLVPGTLNRATINEQLAALKKAIFERALGGELTHH CCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH LGYEKGDAKPAGRTNHRNGTSRKRITTDDDLLDVEIPRDREGTFDPVLIAKGERRFTGFD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCC DKIIAMYARGMSVREIQGFLLEMYGIEVSPDFISTVTDSVIDEVREWQQRPLEPMYPVVF HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH FDALRVKIRDEGVVRNKAIYLALGVRRDGTRDVLGLWIEQTEGAKFWLRVVNDLKLRGVQ HHHHHEEECCCCCEECCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH DILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAP HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCC SAEAAAVALDAFDTSPWGAKYPPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHM CCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHH QLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDWKSAMTQFALLYPERFNIGV HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PRKRKEEVTIEPGKGLNLDPELIKQLVPGTLNRATINEQLAALKKAIFERALGGELTHH CCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH LGYEKGDAKPAGRTNHRNGTSRKRITTDDDLLDVEIPRDREGTFDPVLIAKGERRFTGFD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCC DKIIAMYARGMSVREIQGFLLEMYGIEVSPDFISTVTDSVIDEVREWQQRPLEPMYPVVF HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH FDALRVKIRDEGVVRNKAIYLALGVRRDGTRDVLGLWIEQTEGAKFWLRVVNDLKLRGVQ HHHHHEEECCCCCEECCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH DILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAP HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCC SAEAAAVALDAFDTSPWGAKYPPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHM CCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHH QLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDWKSAMTQFALLYPERFNIGV HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]