Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689706
Identifier: 116689706
GI number: 116689706
Start: 1872804
End: 1873970
Strand: Direct
Name: 116689706
Synonym: Bcen2424_1684
Alternate gene names: NA
Gene position: 1872804-1873970 (Clockwise)
Preceding gene: 116689705
Following gene: 116689707
Centisome position: 53.76
GC content: 66.32
Gene sequence:
>1167_bases ATGAACACCACCCCGATCGCTCGCCGCGTCCGCCGGATCGCACTCGCACTGGGCTTCACGCTGTCGGCCGCCGCGGCCGT GGCAGCCCCCGTATCGCTGAACATCGTCGACGTCGCAGGCAACCTGCAGCTCACGCAGAAGGCCATCGAGGCGTTCAAGG AGAAGAACCCGGGCCTCGTCGCGAACGTCACGTTCACGAACGCGCCCGCGCCGCAGTTGCCGGGCAAGATCAAGGCGATG CAGGCGGCGGGGCGCTCCGACATCGACCTCGTGCTGACCGGCACCGACGCGCTGGCGGCCGGCATCGAGCAAAACCTGTG GCAGAAGCTCCTGCCCGACAACGCGGCCGCGCTCCCCGGCGTGCTCGACAAGTACGCGCCGGGCCCGCGCAAGATGCAGG ATCTCGCGCAGGGCTTCGGCCTCGAAGTGACCTACATGCCGGCCGGCCCGCTGCTCGAATACAACCCGGCGAAGGTCAGC GACCCGCCGAAGACGCCCGACCAGTTGCTCGCGTGGTGCAAGGCGCACCCGAACAAGCTGATCTATGCGCGCCCCGCGAA CTCTGGCCCCGGCCGCACGTTCCTGATGGGGCTGCCGTACGTGCTCGGCGACAAGAATCCGCAGGACCCGATCAACGGCT GGGACAAGACCTGGGCGTTCCTGAAACAGTTGAACGAATGCGTGCCGTACTACCCGGGCGGCACGTCGGCGGTGATGAAG GAGCTCGGCGAAGGCACGCGCGACATGACCGTGACCGTCACCGGCTGGGACCTGAACCCGCGCGCGCTCGGCATCGTGCC GGCCGAGTTCAAGATCCAGGCGTTCGACAACATGACGTGGGTCAACGACGCGCACTACATGGTGATCCCGAAGGGCGTGC CGAAGGAAAAGCTCGACGTGCTGTTCAAGCTGATGAACTTCCTGCTCGAACCGGCGCAGCAGGCGATGACCTACGACGAC GGCTACTTCTACCCGGGCCCGGCGGTGAAGGGCGTGACGCTCGAGATGGCGCCCGCGCACAGCCAGGAAGTGATCAGGAA ATTCGGCCGCCCCGAATACGCAAAGCTGCTCGCCGATCGCCCGCACGTGCAGCCGCTCAACGCGCAGGCGATGGTCGCCG CATTCCAGAAATGGGATCGCGAGATCGGTTCGCAGAAATCGAAGTGA
Upstream 100 bases:
>100_bases CCCGCCCCGAGTCCGGTGGTTTTTTGTTGACCGACATCGTATAACGCCGTCATGATTTCCTGACAAGAAAGGTCCCATCC ACCGACCGAAGTGAGGAGAC
Downstream 100 bases:
>100_bases CGCCTGAACCGGCGGGCGCCACGGCGCCCGCGTCGATGGAGTTCGAGGAATGAAGCACAATTTCGAACGGTTGCGGCTCG ACGGCGTGTGCCGCAGTTTT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MNTTPIARRVRRIALALGFTLSAAAAVAAPVSLNIVDVAGNLQLTQKAIEAFKEKNPGLVANVTFTNAPAPQLPGKIKAM QAAGRSDIDLVLTGTDALAAGIEQNLWQKLLPDNAAALPGVLDKYAPGPRKMQDLAQGFGLEVTYMPAGPLLEYNPAKVS DPPKTPDQLLAWCKAHPNKLIYARPANSGPGRTFLMGLPYVLGDKNPQDPINGWDKTWAFLKQLNECVPYYPGGTSAVMK ELGEGTRDMTVTVTGWDLNPRALGIVPAEFKIQAFDNMTWVNDAHYMVIPKGVPKEKLDVLFKLMNFLLEPAQQAMTYDD GYFYPGPAVKGVTLEMAPAHSQEVIRKFGRPEYAKLLADRPHVQPLNAQAMVAAFQKWDREIGSQKSK
Sequences:
>Translated_388_residues MNTTPIARRVRRIALALGFTLSAAAAVAAPVSLNIVDVAGNLQLTQKAIEAFKEKNPGLVANVTFTNAPAPQLPGKIKAM QAAGRSDIDLVLTGTDALAAGIEQNLWQKLLPDNAAALPGVLDKYAPGPRKMQDLAQGFGLEVTYMPAGPLLEYNPAKVS DPPKTPDQLLAWCKAHPNKLIYARPANSGPGRTFLMGLPYVLGDKNPQDPINGWDKTWAFLKQLNECVPYYPGGTSAVMK ELGEGTRDMTVTVTGWDLNPRALGIVPAEFKIQAFDNMTWVNDAHYMVIPKGVPKEKLDVLFKLMNFLLEPAQQAMTYDD GYFYPGPAVKGVTLEMAPAHSQEVIRKFGRPEYAKLLADRPHVQPLNAQAMVAAFQKWDREIGSQKSK >Mature_388_residues MNTTPIARRVRRIALALGFTLSAAAAVAAPVSLNIVDVAGNLQLTQKAIEAFKEKNPGLVANVTFTNAPAPQLPGKIKAM QAAGRSDIDLVLTGTDALAAGIEQNLWQKLLPDNAAALPGVLDKYAPGPRKMQDLAQGFGLEVTYMPAGPLLEYNPAKVS DPPKTPDQLLAWCKAHPNKLIYARPANSGPGRTFLMGLPYVLGDKNPQDPINGWDKTWAFLKQLNECVPYYPGGTSAVMK ELGEGTRDMTVTVTGWDLNPRALGIVPAEFKIQAFDNMTWVNDAHYMVIPKGVPKEKLDVLFKLMNFLLEPAQQAMTYDD GYFYPGPAVKGVTLEMAPAHSQEVIRKFGRPEYAKLLADRPHVQPLNAQAMVAAFQKWDREIGSQKSK
Specific function: Unknown
COG id: COG4134
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42287; Mature: 42287
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTPIARRVRRIALALGFTLSAAAAVAAPVSLNIVDVAGNLQLTQKAIEAFKEKNPGLV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEE ANVTFTNAPAPQLPGKIKAMQAAGRSDIDLVLTGTDALAAGIEQNLWQKLLPDNAAALPG EEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHCCH VLDKYAPGPRKMQDLAQGFGLEVTYMPAGPLLEYNPAKVSDPPKTPDQLLAWCKAHPNKL HHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE IYARPANSGPGRTFLMGLPYVLGDKNPQDPINGWDKTWAFLKQLNECVPYYPGGTSAVMK EEEECCCCCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH ELGEGTRDMTVTVTGWDLNPRALGIVPAEFKIQAFDNMTWVNDAHYMVIPKGVPKEKLDV HHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECCEEEECCCEEEEECCCCCHHHHHH LFKLMNFLLEPAQQAMTYDDGYFYPGPAVKGVTLEMAPAHSQEVIRKFGRPEYAKLLADR HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHCCC PHVQPLNAQAMVAAFQKWDREIGSQKSK CCCCCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNTTPIARRVRRIALALGFTLSAAAAVAAPVSLNIVDVAGNLQLTQKAIEAFKEKNPGLV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEE ANVTFTNAPAPQLPGKIKAMQAAGRSDIDLVLTGTDALAAGIEQNLWQKLLPDNAAALPG EEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHCCH VLDKYAPGPRKMQDLAQGFGLEVTYMPAGPLLEYNPAKVSDPPKTPDQLLAWCKAHPNKL HHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE IYARPANSGPGRTFLMGLPYVLGDKNPQDPINGWDKTWAFLKQLNECVPYYPGGTSAVMK EEEECCCCCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH ELGEGTRDMTVTVTGWDLNPRALGIVPAEFKIQAFDNMTWVNDAHYMVIPKGVPKEKLDV HHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECCEEEECCCEEEEECCCCCHHHHHH LFKLMNFLLEPAQQAMTYDDGYFYPGPAVKGVTLEMAPAHSQEVIRKFGRPEYAKLLADR HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHCCC PHVQPLNAQAMVAAFQKWDREIGSQKSK CCCCCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA