| Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
|---|---|
| Accession | NC_008513 |
| Length | 416,380 |
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The map label for this gene is gyrA [H]
Identifier: 116515057
GI number: 116515057
Start: 132701
End: 135184
Strand: Reverse
Name: gyrA [H]
Synonym: BCc_116
Alternate gene names: 116515057
Gene position: 135184-132701 (Counterclockwise)
Preceding gene: 116515058
Following gene: 116515051
Centisome position: 32.47
GC content: 24.28
Gene sequence:
>2484_bases ATGAAAGACATTGCAAAAGAAATCAAACAGGTCAATATTGAAGAAGAGTTAAAAAGATCTTATCTTGATTATGCTATGTC TGTAATAATTGGCCGAGCTTTACCTGATGTACGCGATGGTTTAAAACCAGTACATAGAAGAATACTTTTTGCTATGTATA TATTAAATAATGAATGGAATAAACCATATAAAAAATCCGCTCGAATTGTAGGTGATGTAATTGGTAAATATCATCCACAT GGTGACTCTGCAGTATATGATTCTATTGTTAGAATGGCTCAGAAATTTTCTTTAAGATATACTTTAATTGATGGACAAGG AAACTTTGGATCAATTGATGGAGATCCAGCTGCTGCTATGAGATATACAGAAATCCGTATGTCTAGAATTGCTCATGAAA TGTTAAGTGAATTAGAAAAAAATACAATTGATTTTGTCTTAAATTATGATGGAACTGAAAAAATACCAGAAATTTTACCT ACAAAAATTCCTAATTTACTTATTAATGGTTCTTCAGGAATTGCAGTTGGTATGGCTACTAATATACCACCACATAATTT AAAAGAAGTAATAAATGGATGTATTGCATATCTTTATAATCCTTCTATTTCTTTAAAAGAACTTATGCTATATATACCTG GACCAGATTTTCCAACATCTGGAATTATTTATGGAAAAAATGGAATTAAAGAAGCCTATAAAACTGGAAAGGGGAAAATA ATAGTAAGATCAAAATATAATATAGAAATTAATAAAAAAAATAAAAAAGAATCACTAATTATTTATGAATTACCATATCA AGTAAATAAATCTAAATTAATTGAAAAAATTGCAATTTTAGTAAAAGAAAAAAAAATTAATGGAATAACAAACATTCGTG ATGAATCAGATAAAGATGGTATGAGAATTGTTATTGATATAAAAAAAGATTTTATTAGTCAAATAATTCTAAACCAATTA TATACTCTGACATCTTTACAAACATCTTTTGGAATTAATATGGTTGCATTATCATCTGGCAAACCAAAAACAATGAATTT AAAAAAAATTCTAAAAGAATTTATAAAACATAGAAAAAAAATAATTAAAAGAAAATGTTTATTTAAATTAAAAAAATCAA ATAAAAAAATGCATCTTTTAGAAGGATTTGCTATTGCGCTAAATAATATTAATACTATAATTCATTTAATAAAAAATTCA GAAAATCATACTATTGCTAAAAAAAAATTAAAAAAAATCAATTGGAAAAAAGAAAATAATAGTTCAAAAAAAAATAAAAA ATATTTTTATTTTAGTAATAAACAATCATTAGCAATATTAAATATAAAATTAAATAAACTAACTTCATTAGAAAAAAAAA AAATTAATCTTGAATACAACAAATTAATTAAAAAAACAATTAAACTAAAAAAAATATTATCAAATAAAAATATTCTAGAA AAAAAAATTGAAAAAGAATTAAATGAAATAAAAAAAAAATTTTCTGATACCAGAAAAACAAAAATAATTAGTAAAATGTC AGAAATTAATATAGAAGATATGATTGTAAAAGAAACAGTAGTAGTTACCTTATCATATTCAGGATATGTTAAATATCAAC CTATATCTGATTATAATGCACAAAAAAGAGGGGGAAGAGGAAAATCAGCTGCAAAAACAAAAGAAGAAGACTATATAACG AATTTGTTAGTTGCTAATTCTCATGATACAATATTGTGTTTTTCTAGTAGAGGACTACTATATTGGATGAAAGTATACCA ATTACCTGAAACTAGTCGAAATGCACGTGGAAAACCAATAGTTAATTTATTACCTTTAACATCAAAAGAAAGAATTACTA CAATTTTACCTATTTCAAAATATAAATCTTCTATAAATATTTTTATGGCTACAGCTTTAGGATTCGTTAAAAAAACATCA TTAATACAATTTAAAAAACCAAGAAATTCAGGTATTATTGCTATTAATTTAAGAAAAAATGATAAACTAATAGGTGTTTC ATTAACTACTGGAAACAATAATATCTGTATGTTTACTTCAAAAGGAAAAGTTGTTCAGTTTTCTGAAAAAACAATACGAA AAATGGGCCGAACTGCATCTGGAATTCGAGGAATGAAAATTACAAATAATGATCGATTAGTTTCATTATTAGTACCAAAT AAAAAAGATGATATTTTAATAGTTACTGCAAATGGATATGGAAAAAGAACTAATATTAACCAATTTCCTATTAAATCACG TGCAACTAAAGGTGTTCTCTCTATAAGGGTAACACAAAAAAATGGTGTTGTAATTGGAGCCATTCAAGTAAAACAGAATG ATCAAATTATGATCATTACAAACGCGGGTACATTAGTACGAACTAGAGTGTCTGAAATTGCAATATTAAAAAGAAATACA CAAGGTGTTATTTTAATAAGAACGATTAAAAAAGAAAAAGTAGTAGGATTACAAAAATTATCTAATAAACCTATTATATC ATAA
Upstream 100 bases:
>100_bases ACAATTAATTAATAACAAATTAAAAACTAAATTATCATATTATTATTTATATTATAATTATAAATTTTAAATAAAAATCA TTTTATTGAGATTAAAATTA
Downstream 100 bases:
>100_bases AATAACTATATTAAATAAAAAATCATTTATTATAGAAATTTTATGAATTTTAAATATTTTTAAAAAATATTTACTTTTAT ATTATAAAAGTAAATATATG
Product: DNA gyrase, A subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MKDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPYKKSARIVGDVIGKYHPH GDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILP TKIPNLLINGSSGIAVGMATNIPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKI IVRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMRIVIDIKKDFISQIILNQL YTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKIIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNS ENHTIAKKKLKKINWKKENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE KKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYNAQKRGGRGKSAAKTKEEDYIT NLLVANSHDTILCFSSRGLLYWMKVYQLPETSRNARGKPIVNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTS LIQFKKPRNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRLVSLLVPN KKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIITNAGTLVRTRVSEIAILKRNT QGVILIRTIKKEKVVGLQKLSNKPIIS
Sequences:
>Translated_827_residues MKDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPYKKSARIVGDVIGKYHPH GDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILP TKIPNLLINGSSGIAVGMATNIPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKI IVRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMRIVIDIKKDFISQIILNQL YTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKIIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNS ENHTIAKKKLKKINWKKENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE KKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYNAQKRGGRGKSAAKTKEEDYIT NLLVANSHDTILCFSSRGLLYWMKVYQLPETSRNARGKPIVNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTS LIQFKKPRNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRLVSLLVPN KKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIITNAGTLVRTRVSEIAILKRNT QGVILIRTIKKEKVVGLQKLSNKPIIS >Mature_827_residues MKDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPYKKSARIVGDVIGKYHPH GDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILP TKIPNLLINGSSGIAVGMATNIPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKI IVRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMRIVIDIKKDFISQIILNQL YTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKIIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNS ENHTIAKKKLKKINWKKENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE KKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYNAQKRGGRGKSAAKTKEEDYIT NLLVANSHDTILCFSSRGLLYWMKVYQLPETSRNARGKPIVNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTS LIQFKKPRNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRLVSLLVPN KKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIITNAGTLVRTRVSEIAILKRNT QGVILIRTIKKEKVVGLQKLSNKPIIS
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=342, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI19913406, Length=168, Percent_Identity=32.1428571428571, Blast_Score=81, Evalue=4e-15, Organism=Escherichia coli, GI1788562, Length=844, Percent_Identity=58.0568720379147, Blast_Score=1077, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=704, Percent_Identity=34.375, Blast_Score=390, Evalue=1e-109, Organism=Caenorhabditis elegans, GI17535065, Length=167, Percent_Identity=32.3353293413174, Blast_Score=80, Evalue=5e-15, Organism=Caenorhabditis elegans, GI212645657, Length=166, Percent_Identity=31.9277108433735, Blast_Score=79, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324241, Length=188, Percent_Identity=27.1276595744681, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17136538, Length=166, Percent_Identity=30.7228915662651, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 93813; Mature: 93813
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWN CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC KPYKKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCHHHHH RYTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMAT HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCEEEECCCCEEEEEEC NIPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKI CCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCEEECCCCHHHHHHCCCCEE IVRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDG EEEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC MRIVIDIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKK CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH IIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKKENN HHHHHHHHHHHHCCCEEEEHHHHHHHHHCHHEEEEEEECCCCCHHHHHHHHHCCCCCCCC SSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE CCCCCCEEEEEECCCEEEEEEEEEHHHHCCHHHEECCHHHHHHHHHHHHHHHHCCCHHHH KKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEEEEEECCEEEEECCCCCCC QKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSRNARGKPI HHCCCCCCCCCCCCHHHHHEEEEEECCCCEEEEEECCCEEEEEEHHCCCCCCCCCCCCCE VNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTSLIQFKKPRNSGIIAINLRKN EEEECCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECC DKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRLVSLLVPN CEEEEEEEEECCCCEEEEECCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCEEEEEECC KKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIIT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCEEEEEE NAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLSNKPIIS CCCCEEHHHHHHEEEEEECCCCEEEEEEECHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWN CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC KPYKKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCHHHHH RYTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMAT HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCEEEECCCCEEEEEEC NIPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKI CCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCEEECCCCHHHHHHCCCCEE IVRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDG EEEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC MRIVIDIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKK CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH IIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKKENN HHHHHHHHHHHHCCCEEEEHHHHHHHHHCHHEEEEEEECCCCCHHHHHHHHHCCCCCCCC SSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE CCCCCCEEEEEECCCEEEEEEEEEHHHHCCHHHEECCHHHHHHHHHHHHHHHHCCCHHHH KKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEEEEEECCEEEEECCCCCCC QKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSRNARGKPI HHCCCCCCCCCCCCHHHHHEEEEEECCCCEEEEEECCCEEEEEEHHCCCCCCCCCCCCCE VNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTSLIQFKKPRNSGIIAINLRKN EEEECCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECC DKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRLVSLLVPN CEEEEEEEEECCCCEEEEECCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCEEEEEECC KKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIIT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCEEEEEE NAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLSNKPIIS CCCCEEHHHHHHEEEEEECCCCEEEEEEECHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10993077 [H]