Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is aroC
Identifier: 116515003
GI number: 116515003
Start: 68027
End: 69088
Strand: Reverse
Name: aroC
Synonym: BCc_061
Alternate gene names: 116515003
Gene position: 69088-68027 (Counterclockwise)
Preceding gene: 116515015
Following gene: 116515002
Centisome position: 16.59
GC content: 29.28
Gene sequence:
>1062_bases ATGCCGGGAAATTCAATTGGAAAAATATTTAAAGTTACTACATGTGGGGAATCACATGGACCTATGTTAGCAGGAATTAT TGATGGAGTTCCGCCTGGTTTATCTTTAAACAATAAAGATATTCAATATGAATTAAATAGAAGAAGACCGGGTTTTTCTA AATTTACATCACAAAGAAGAGAAAAAGATAAAGTAGAAATATTTTCAGGAATATTTAAAGGAATAACTACTGGAACAAGT ATAGGCATAAGAATAAAAAATATAGATATTAGATCACAAGATTATTCAGAAATTAAAAATTTATATCGACCTAATCATGC TGATTATACATATGAAAAAAAATATGGAATCAGAGATTATAGAGGTGGAGGAAGATCCTCAGCTAGAGAAACAGCTATTC GAGTAGCTGCTGGAGCTATTGCTAAAAAATATTTAAAATTACAACATAATATAAAAATTAGAGGATATTTGTCACAAATA GGATCAATTTATTGTCCATTTCAATCTTGGGAAGAAGTAGAAAAAAATCCTTTTTTTTGTAGTAATTCAGAAAAAATAAA AAAAATTATACATTTTATCAAAAAATTAAAAAAAAGTGGAAATTCAGTAGGAGCAAAAATTACTATTATTGCTAAAAATG TTCCTATTGGATTAGGAGAACCTGTATTTGATAGACTAAATGCTGAAATTGCACATTCTATAATGAGTATTAATGCTGCT AAATCTATTGAAATTGGAGATGGAATTCATGTAGCTAAACAAACAGGAGTTGAACATAGAGATGAAATTCTACCTAACGG ATTTTCTAGCAATCATTCCGGAGGAATATTAGGTGGTATTAGTAACGGGGAAGAAATTATTGTACATGCAGCTTTTAAAC CTACATCTAGTATTAAAATACCGGGAAAAACAATAGATACATTTGGAAAAAAAAGATTTATTATAACAAAAGGAAGACAT GATCCTTGTGTAGGAATTCGAGCTGTTCCAATTGCAGAAGCAATGTTAGCAATTACATTAATGGACCATGTTTTACGTTT CAAAGCTCAATGTGGAAAATAA
Upstream 100 bases:
>100_bases TATAGATTAATATAATTAATTAATTATTTATTTTAAATAAATAAAATATTATAATAATAAAATAATATTTCTTTATTTCT TGCAAACTATGAGGTAGAAA
Downstream 100 bases:
>100_bases AATTTTAATATAATATAAATTACATTATTTCAACTAAAAAAAATATTTTATTTTTAAAAATTCTCCAAAATATATTTTAT ATATATAAAAAATACTTATA
Product: chorismate synthase
Products: NA
Alternate protein names: 5-enolpyruvylshikimate-3-phosphate phospholyase
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MPGNSIGKIFKVTTCGESHGPMLAGIIDGVPPGLSLNNKDIQYELNRRRPGFSKFTSQRREKDKVEIFSGIFKGITTGTS IGIRIKNIDIRSQDYSEIKNLYRPNHADYTYEKKYGIRDYRGGGRSSARETAIRVAAGAIAKKYLKLQHNIKIRGYLSQI GSIYCPFQSWEEVEKNPFFCSNSEKIKKIIHFIKKLKKSGNSVGAKITIIAKNVPIGLGEPVFDRLNAEIAHSIMSINAA KSIEIGDGIHVAKQTGVEHRDEILPNGFSSNHSGGILGGISNGEEIIVHAAFKPTSSIKIPGKTIDTFGKKRFIITKGRH DPCVGIRAVPIAEAMLAITLMDHVLRFKAQCGK
Sequences:
>Translated_353_residues MPGNSIGKIFKVTTCGESHGPMLAGIIDGVPPGLSLNNKDIQYELNRRRPGFSKFTSQRREKDKVEIFSGIFKGITTGTS IGIRIKNIDIRSQDYSEIKNLYRPNHADYTYEKKYGIRDYRGGGRSSARETAIRVAAGAIAKKYLKLQHNIKIRGYLSQI GSIYCPFQSWEEVEKNPFFCSNSEKIKKIIHFIKKLKKSGNSVGAKITIIAKNVPIGLGEPVFDRLNAEIAHSIMSINAA KSIEIGDGIHVAKQTGVEHRDEILPNGFSSNHSGGILGGISNGEEIIVHAAFKPTSSIKIPGKTIDTFGKKRFIITKGRH DPCVGIRAVPIAEAMLAITLMDHVLRFKAQCGK >Mature_352_residues PGNSIGKIFKVTTCGESHGPMLAGIIDGVPPGLSLNNKDIQYELNRRRPGFSKFTSQRREKDKVEIFSGIFKGITTGTSI GIRIKNIDIRSQDYSEIKNLYRPNHADYTYEKKYGIRDYRGGGRSSARETAIRVAAGAIAKKYLKLQHNIKIRGYLSQIG SIYCPFQSWEEVEKNPFFCSNSEKIKKIIHFIKKLKKSGNSVGAKITIIAKNVPIGLGEPVFDRLNAEIAHSIMSINAAK SIEIGDGIHVAKQTGVEHRDEILPNGFSSNHSGGILGGISNGEEIIVHAAFKPTSSIKIPGKTIDTFGKKRFIITKGRHD PCVGIRAVPIAEAMLAITLMDHVLRFKAQCGK
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; seventh step. [C]
COG id: COG0082
COG function: function code E; Chorismate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chorismate synthase family
Homologues:
Organism=Escherichia coli, GI1788669, Length=350, Percent_Identity=64, Blast_Score=466, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6321290, Length=370, Percent_Identity=44.0540540540541, Blast_Score=288, Evalue=1e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): AROC_BUCCC (Q058B0)
Other databases:
- EMBL: CP000263 - RefSeq: YP_802632.1 - ProteinModelPortal: Q058B0 - SMR: Q058B0 - STRING: Q058B0 - EnsemblBacteria: EBBUCT00000001326 - GeneID: 4440765 - GenomeReviews: CP000263_GR - KEGG: bcc:BCc_061 - eggNOG: COG0082 - GeneTree: EBGT00050000007958 - HOGENOM: HBG292336 - OMA: SRFTTQR - ProtClustDB: PRK05382 - BioCyc: BAPH372461:BCC_061-MONOMER - HAMAP: MF_00300_B - InterPro: IPR000453 - InterPro: IPR020541 - PANTHER: PTHR21085 - PIRSF: PIRSF001456 - TIGRFAMs: TIGR00033
Pfam domain/function: PF01264 Chorismate_synt; SSF103263 Chorismate_synth
EC number: =4.2.3.5
Molecular weight: Translated: 38878; Mature: 38746
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: PS00787 CHORISMATE_SYNTHASE_1; PS00788 CHORISMATE_SYNTHASE_2; PS00789 CHORISMATE_SYNTHASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGNSIGKIFKVTTCGESHGPMLAGIIDGVPPGLSLNNKDIQYELNRRRPGFSKFTSQRR CCCCCCCCEEEEEECCCCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH EKDKVEIFSGIFKGITTGTSIGIRIKNIDIRSQDYSEIKNLYRPNHADYTYEKKYGIRDY HHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCEEHHCCCCCCC RGGGRSSARETAIRVAAGAIAKKYLKLQHNIKIRGYLSQIGSIYCPFQSWEEVEKNPFFC CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCCEECCCCCHHHHHCCCCEE SNSEKIKKIIHFIKKLKKSGNSVGAKITIIAKNVPIGLGEPVFDRLNAEIAHSIMSINAA CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC KSIEIGDGIHVAKQTGVEHRDEILPNGFSSNHSGGILGGISNGEEIIVHAAFKPTSSIKI CEEECCCCEEHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCEEE PGKTIDTFGKKRFIITKGRHDPCVGIRAVPIAEAMLAITLMDHVLRFKAQCGK CCCHHHHCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PGNSIGKIFKVTTCGESHGPMLAGIIDGVPPGLSLNNKDIQYELNRRRPGFSKFTSQRR CCCCCCCEEEEEECCCCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH EKDKVEIFSGIFKGITTGTSIGIRIKNIDIRSQDYSEIKNLYRPNHADYTYEKKYGIRDY HHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCEEHHCCCCCCC RGGGRSSARETAIRVAAGAIAKKYLKLQHNIKIRGYLSQIGSIYCPFQSWEEVEKNPFFC CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCCEECCCCCHHHHHCCCCEE SNSEKIKKIIHFIKKLKKSGNSVGAKITIIAKNVPIGLGEPVFDRLNAEIAHSIMSINAA CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC KSIEIGDGIHVAKQTGVEHRDEILPNGFSSNHSGGILGGISNGEEIIVHAAFKPTSSIKI CEEECCCCEEHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCEEE PGKTIDTFGKKRFIITKGRHDPCVGIRAVPIAEAMLAITLMDHVLRFKAQCGK CCCHHHHCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA