Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
---|---|
Accession | NC_008525 |
Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is murQ [H]
Identifier: 116492806
GI number: 116492806
Start: 1035290
End: 1036180
Strand: Reverse
Name: murQ [H]
Synonym: PEPE_1043
Alternate gene names: 116492806
Gene position: 1036180-1035290 (Counterclockwise)
Preceding gene: 116492809
Following gene: 116492805
Centisome position: 56.55
GC content: 37.71
Gene sequence:
>891_bases ATGATTGATTTAAGTGATTTAACAACGGAAACTCGTAATGAGGAAACTATGAATTTAGACGAGCTATCTACAGCAGAAAT ATTAAAAATAATGAATTCTGAAGATCAAAAGGTAGCTCAAAGAGTTGGTAAGGTGCTACCTGATATTACACAAGCTGTCA AACAGATTATCCTTAGTTTTAACAAAAAAGGGCGTTTATTCTACATTGGTGCTGGGACAAGTGGTCGACTAGGTGTTCTA GATGCTGCAGAGTGTGTACCAACTTTTGGAACAGACCCTAAGATGGTTCAAGGCTTGATTGCAGGTGGAATGAAAGCTAT GACAATTGCTGTAGAAGGAGCTGAAGATTCGCCAGAGCTAGGTGCTAAGGATTTGCAATCTCAAAACTTAACTAATAAAG ATATTGTCGTTGGAATTGCTGCAAGTGGACGAACACCATATGTCATTGGTGGATTAGACTATGCCAAAAAAGTTGGTGCA GCAACAATTAGTCTTGCTTGTAATGATCACGCTAAAATTAGTAAACATGCTGATATTAACATTGAAATATCAGTGGGCCC TGAGGTTTTAACTGGTTCAACGCGTTTAAAATCGGGGACAGCCCAAAAACTTGTGTTAAACATGCTATCTACAGCCTCAA TGATCGGGATTGGAAAGGTTTATAAGAACTTAATGGTAGATGTGAAACCCACCAATGCCAAATTAGTGGAACGTTCAAAA CGTATTATTATGGAAGCAACGGATGTAAGTTATACAGTAGCGAATGATATGTTTGAAAAGGCAGGTAAAGATGTGAAGTT GGCCATTGTTATGATCTTAACTGATGTCGATTTGAATGAAGCAAAAAAGAGGCTGCAGGTAGCAAAAGGTTTTGTTAGAA AGACAATATAA
Upstream 100 bases:
>100_bases AAATTTCTTAAAAATAGAATAATAAAATATTTATTTGAAATGTTATTTCTTTTATTATAAAATGTAACTGTAAATGAAAG CGCATACAAGGAGGAGCAGC
Downstream 100 bases:
>100_bases AGTGGGGATGAGAACTTATGTCAGAAACATCTGAAGAAAAAATTAAAAGAATTGCACGTGAAATTTACGGCGCAGTTGGT GGTATCGAAAATGTTGAAAA
Product: N-acetylmuramic acid-6-phosphate etherase
Products: NA
Alternate protein names: MurNAc-6-P etherase 2; N-acetylmuramic acid 6-phosphate hydrolase 2; N-acetylmuramic acid 6-phosphate lyase 2 [H]
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MIDLSDLTTETRNEETMNLDELSTAEILKIMNSEDQKVAQRVGKVLPDITQAVKQIILSFNKKGRLFYIGAGTSGRLGVL DAAECVPTFGTDPKMVQGLIAGGMKAMTIAVEGAEDSPELGAKDLQSQNLTNKDIVVGIAASGRTPYVIGGLDYAKKVGA ATISLACNDHAKISKHADINIEISVGPEVLTGSTRLKSGTAQKLVLNMLSTASMIGIGKVYKNLMVDVKPTNAKLVERSK RIIMEATDVSYTVANDMFEKAGKDVKLAIVMILTDVDLNEAKKRLQVAKGFVRKTI
Sequences:
>Translated_296_residues MIDLSDLTTETRNEETMNLDELSTAEILKIMNSEDQKVAQRVGKVLPDITQAVKQIILSFNKKGRLFYIGAGTSGRLGVL DAAECVPTFGTDPKMVQGLIAGGMKAMTIAVEGAEDSPELGAKDLQSQNLTNKDIVVGIAASGRTPYVIGGLDYAKKVGA ATISLACNDHAKISKHADINIEISVGPEVLTGSTRLKSGTAQKLVLNMLSTASMIGIGKVYKNLMVDVKPTNAKLVERSK RIIMEATDVSYTVANDMFEKAGKDVKLAIVMILTDVDLNEAKKRLQVAKGFVRKTI >Mature_296_residues MIDLSDLTTETRNEETMNLDELSTAEILKIMNSEDQKVAQRVGKVLPDITQAVKQIILSFNKKGRLFYIGAGTSGRLGVL DAAECVPTFGTDPKMVQGLIAGGMKAMTIAVEGAEDSPELGAKDLQSQNLTNKDIVVGIAASGRTPYVIGGLDYAKKVGA ATISLACNDHAKISKHADINIEISVGPEVLTGSTRLKSGTAQKLVLNMLSTASMIGIGKVYKNLMVDVKPTNAKLVERSK RIIMEATDVSYTVANDMFEKAGKDVKLAIVMILTDVDLNEAKKRLQVAKGFVRKTI
Specific function: Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate [H]
COG id: COG2103
COG function: function code R; Predicted sugar phosphate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SIS domain [H]
Homologues:
Organism=Escherichia coli, GI1788768, Length=295, Percent_Identity=50.8474576271186, Blast_Score=284, Evalue=6e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005486 - InterPro: IPR005488 - InterPro: IPR001347 [H]
Pfam domain/function: PF01380 SIS [H]
EC number: NA
Molecular weight: Translated: 31757; Mature: 31757
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: PS01272 GCKR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDLSDLTTETRNEETMNLDELSTAEILKIMNSEDQKVAQRVGKVLPDITQAVKQIILSF CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC NKKGRLFYIGAGTSGRLGVLDAAECVPTFGTDPKMVQGLIAGGMKAMTIAVEGAEDSPEL CCCCCEEEEECCCCCCEECCCHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCC GAKDLQSQNLTNKDIVVGIAASGRTPYVIGGLDYAKKVGAATISLACNDHAKISKHADIN CHHHHHHCCCCCCCEEEEEECCCCCCEEEECHHHHHHCCCEEEEEEECCCCCCCCCCCEE IEISVGPEVLTGSTRLKSGTAQKLVLNMLSTASMIGIGKVYKNLMVDVKPTNAKLVERSK EEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH RIIMEATDVSYTVANDMFEKAGKDVKLAIVMILTDVDLNEAKKRLQVAKGFVRKTI HHEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIDLSDLTTETRNEETMNLDELSTAEILKIMNSEDQKVAQRVGKVLPDITQAVKQIILSF CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC NKKGRLFYIGAGTSGRLGVLDAAECVPTFGTDPKMVQGLIAGGMKAMTIAVEGAEDSPEL CCCCCEEEEECCCCCCEECCCHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCC GAKDLQSQNLTNKDIVVGIAASGRTPYVIGGLDYAKKVGAATISLACNDHAKISKHADIN CHHHHHHCCCCCCCEEEEEECCCCCCEEEECHHHHHHCCCEEEEEEECCCCCCCCCCCEE IEISVGPEVLTGSTRLKSGTAQKLVLNMLSTASMIGIGKVYKNLMVDVKPTNAKLVERSK EEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH RIIMEATDVSYTVANDMFEKAGKDVKLAIVMILTDVDLNEAKKRLQVAKGFVRKTI HHEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12566566 [H]