| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is bdhA [H]
Identifier: 114799375
GI number: 114799375
Start: 940915
End: 941976
Strand: Reverse
Name: bdhA [H]
Synonym: HNE_0923
Alternate gene names: 114799375
Gene position: 941976-940915 (Counterclockwise)
Preceding gene: 114800243
Following gene: 114797378
Centisome position: 25.42
GC content: 65.16
Gene sequence:
>1062_bases ATGCGCGCCGCTGTGCTTCAGGGCAATTCCATCCGCATCCGCCAGATGCCGGACCCGTCACCGCTGGCGGGACAGCTCCT CGTCCGCCCGATCTTCACCGGCATCTGCGGCAGCGACCTCAGCGCCCGCAAGCAGATGGCCGCGATGGCCGATACCCTGC CGCCCGAGGCGCAAGGCCAGATGCCCGCCATCATTCCCGGCCACGAATTTTCCGCCGAAATCATCGGTATCGCGCCGGGA ACCGATACCAGATTGAAGGCAGGGGACATCATTACAGGCCTTCCCTTCACGCACACGCATGAAGGCCCCCAGACCATCGG GCTTTCCCCCGCCCATGGCGGCGGCCTGGCGGAACTCTCATGTATCGACGCTTCCCGCAGCTTCCGTATTCCAGACGGCG TGCCCCACGACCTTGCCGCCCTCACCGAGCCGCTCGCCGTGGGCCTTCATGCTGCCAATCTGGCAAGCCGCAACCGGGCG CCCAATGTTGTCATCGGCTGCGGGCCGGTGGGTCTTGCCGTGATCCTCTCCCTCAGCCTGCAGGGGCGCGGGCCGATCCT GGCGGCGGACTTTTCTGCTGAGCGCCGCCACGCCGCAAGTCTTCTGGGGGCGGATATTGTCATAGATCCGCGTGCAGACT CCGCCTTCACGCATTGGGGCGATCTCGGGCTCCAGCCATTTCCAATGTCGCCCCTGCTGGAACGGGATTTCCGCGGCCTG CCGCCGGGCGCGAACATCTTCGAATGCACGGGCGCGCAAGGCCTGATCGATCAGGTCATCAAAGGCGCCCCGCCGCACAG CCACATCATCGTCGCCGGGGTCTGCCCGCATGAGGAAAAGCTGACCCCGCTCGACGGTATCCTGCGCGAACTGACGCTCG AATTCAGCTTTGCCTACCGCCCTGAAGAGTTCGCCGCCGCCCTCGCCATGATCGAGGCCCACCCGGATAAAGCCGCCCGC CTCATCACCAGCCGTCAACCGCTGGCGAACACCGAAGCCGCCTTCGACAGCCTCGCCAGCAGCCCCAGCGAAATCAAGAT ACTGATTGATCCGAACGCTTAA
Upstream 100 bases:
>100_bases GCCGATGGCGGACGCACCGCCCATACCGGCCAGCCGGAAGTCGCCCAGTTCGCCCTGCCGCCCGAGAACTGAAACTTCCA GGAAATCAGGATTAGAGATC
Downstream 100 bases:
>100_bases GGCTTCAGCGCCCGCCAGCCAATGTCCCGGCGGCAGAAACCGCCCGGCCAGTCAATGGCGTCCACGCCCGCATAGGCACG GTCGATCGCTTCGCGCAAGG
Product: zinc-binding dehydrogenase family oxidoreductase
Products: NA
Alternate protein names: Acetoin reductase/2,3-butanediol dehydrogenase; AR/BDH [H]
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MRAAVLQGNSIRIRQMPDPSPLAGQLLVRPIFTGICGSDLSARKQMAAMADTLPPEAQGQMPAIIPGHEFSAEIIGIAPG TDTRLKAGDIITGLPFTHTHEGPQTIGLSPAHGGGLAELSCIDASRSFRIPDGVPHDLAALTEPLAVGLHAANLASRNRA PNVVIGCGPVGLAVILSLSLQGRGPILAADFSAERRHAASLLGADIVIDPRADSAFTHWGDLGLQPFPMSPLLERDFRGL PPGANIFECTGAQGLIDQVIKGAPPHSHIIVAGVCPHEEKLTPLDGILRELTLEFSFAYRPEEFAAALAMIEAHPDKAAR LITSRQPLANTEAAFDSLASSPSEIKILIDPNA
Sequences:
>Translated_353_residues MRAAVLQGNSIRIRQMPDPSPLAGQLLVRPIFTGICGSDLSARKQMAAMADTLPPEAQGQMPAIIPGHEFSAEIIGIAPG TDTRLKAGDIITGLPFTHTHEGPQTIGLSPAHGGGLAELSCIDASRSFRIPDGVPHDLAALTEPLAVGLHAANLASRNRA PNVVIGCGPVGLAVILSLSLQGRGPILAADFSAERRHAASLLGADIVIDPRADSAFTHWGDLGLQPFPMSPLLERDFRGL PPGANIFECTGAQGLIDQVIKGAPPHSHIIVAGVCPHEEKLTPLDGILRELTLEFSFAYRPEEFAAALAMIEAHPDKAAR LITSRQPLANTEAAFDSLASSPSEIKILIDPNA >Mature_353_residues MRAAVLQGNSIRIRQMPDPSPLAGQLLVRPIFTGICGSDLSARKQMAAMADTLPPEAQGQMPAIIPGHEFSAEIIGIAPG TDTRLKAGDIITGLPFTHTHEGPQTIGLSPAHGGGLAELSCIDASRSFRIPDGVPHDLAALTEPLAVGLHAANLASRNRA PNVVIGCGPVGLAVILSLSLQGRGPILAADFSAERRHAASLLGADIVIDPRADSAFTHWGDLGLQPFPMSPLLERDFRGL PPGANIFECTGAQGLIDQVIKGAPPHSHIIVAGVCPHEEKLTPLDGILRELTLEFSFAYRPEEFAAALAMIEAHPDKAAR LITSRQPLANTEAAFDSLASSPSEIKILIDPNA
Specific function: Unknown
COG id: COG1063
COG function: function code ER; Threonine dehydrogenase and related Zn-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the zinc-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI156627571, Length=360, Percent_Identity=24.7222222222222, Blast_Score=86, Evalue=7e-17, Organism=Escherichia coli, GI1788073, Length=362, Percent_Identity=24.585635359116, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788407, Length=345, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790045, Length=359, Percent_Identity=23.6768802228412, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1787863, Length=226, Percent_Identity=26.1061946902655, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562876, Length=362, Percent_Identity=27.0718232044199, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562878, Length=273, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6319257, Length=401, Percent_Identity=25.4364089775561, Blast_Score=89, Evalue=8e-19, Organism=Saccharomyces cerevisiae, GI6319258, Length=371, Percent_Identity=24.2587601078167, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323099, Length=357, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=3e-13, Organism=Drosophila melanogaster, GI17137530, Length=350, Percent_Identity=28, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI17737897, Length=365, Percent_Identity=27.6712328767123, Blast_Score=83, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR002085 - InterPro: IPR002328 - InterPro: IPR011032 - InterPro: IPR016040 [H]
Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]
EC number: =1.1.1.4 [H]
Molecular weight: Translated: 37060; Mature: 37060
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAAVLQGNSIRIRQMPDPSPLAGQLLVRPIFTGICGSDLSARKQMAAMADTLPPEAQGQ CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC MPAIIPGHEFSAEIIGIAPGTDTRLKAGDIITGLPFTHTHEGPQTIGLSPAHGGGLAELS CCEEECCCCCCCEEEEECCCCCCCEECCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEE CIDASRSFRIPDGVPHDLAALTEPLAVGLHAANLASRNRAPNVVIGCGPVGLAVILSLSL EECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCC QGRGPILAADFSAERRHAASLLGADIVIDPRADSAFTHWGDLGLQPFPMSPLLERDFRGL CCCCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC PPGANIFECTGAQGLIDQVIKGAPPHSHIIVAGVCPHEEKLTPLDGILRELTLEFSFAYR CCCCCEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEC PEEFAAALAMIEAHPDKAARLITSRQPLANTEAAFDSLASSPSEIKILIDPNA CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC >Mature Secondary Structure MRAAVLQGNSIRIRQMPDPSPLAGQLLVRPIFTGICGSDLSARKQMAAMADTLPPEAQGQ CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC MPAIIPGHEFSAEIIGIAPGTDTRLKAGDIITGLPFTHTHEGPQTIGLSPAHGGGLAELS CCEEECCCCCCCEEEEECCCCCCCEECCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEE CIDASRSFRIPDGVPHDLAALTEPLAVGLHAANLASRNRAPNVVIGCGPVGLAVILSLSL EECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCC QGRGPILAADFSAERRHAASLLGADIVIDPRADSAFTHWGDLGLQPFPMSPLLERDFRGL CCCCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC PPGANIFECTGAQGLIDQVIKGAPPHSHIIVAGVCPHEEKLTPLDGILRELTLEFSFAYR CCCCCEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEC PEEFAAALAMIEAHPDKAARLITSRQPLANTEAAFDSLASSPSEIKILIDPNA CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9455482; 9384377 [H]