BacMap

Definition	Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession	NC_008358
Length	3,705,021

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The map label for this gene is yxbG [H]

Identifier: 114800243

GI number: 114800243

Start: 942005

End: 942793

Strand: Reverse

Name: yxbG [H]

Synonym: HNE_0924

Alternate gene names: 114800243

Gene position: 942793-942005 (Counterclockwise)

Preceding gene: 114797832

Following gene: 114799375

Centisome position: 25.45

GC content: 64.39

Gene sequence:

>789_bases
ATGACCCGCAAGAGATTTGAAAACAAAGTCGCCGTCATCACCGGCGCCGCCTCCGGCATCGGCGCGGCGACCGCCCGCCT
TCTAGCCCGCGAAGGCGCTCATGTTGTCCTCGCAGACGTAAACGACAATGGCGGCAAATCCATCGCCGCAGACCTTGGCC
CCACGGCCATGGCGGTCAAGTGCGATGTGTCCAGCGCTGCCGAGGTTGAAGCCCTCGTCAAGGCGGCTGTGGAGCGCCAT
GGGCGCATCGACATCCTCTTCAACAATGCCGGCATCGGCAGCTTTGGCACCAGCGTGGAAATTCAGCCCGCGGAATGGGA
ACGCGTCATCGCGATTGATCTGCACAGTGTCTATTATGCCTGCCACTTCGCCATTCCCCACATGCCGCGCGGGAGCGCCA
TCGTGAACACCGCCTCCATCTCCGGCCTGGGCGGAGACTATCGCTTCGCCGCCTATAACGCCGCCAAGGGCGCCGTAGTG
AATTACACCCGCGCCCTCGCCGTCGATCATGGCCGGGACGGTATCCGTGTCAACGCGCTCTGCCCCGGCCTTGTCGAAAC
GCCGATCACGGCGGGCGTGCAGCAAATGCCCGGCCTTCGGGAAGACTGGCTCAAACGCATCCCCATGGAGCGGGCGGCTC
AGCCTGAAGAGATGGCCAGTGTCGTGGCCTTCCTCGCCTCGGATGATGCCTCCTATGTCACCGGCACCATCATGGTCGCC
GATGGCGGACGCACCGCCCATACCGGCCAGCCGGAAGTCGCCCAGTTCGCCCTGCCGCCCGAGAACTGA

Upstream 100 bases:

>100_bases
CTGCCCGCCTGGGCCAAGATCACCGATGTGATCAAGGAACGCCGCCCGGCCTGGGCCACCGAAACCCCGCCCAGCGCCGC
GCGCTGAAGCGAGCTTTCCC

Downstream 100 bases:

>100_bases
AACTTCCAGGAAATCAGGATTAGAGATCATGCGCGCCGCTGTGCTTCAGGGCAATTCCATCCGCATCCGCCAGATGCCGG
ACCCGTCACCGCTGGCGGGA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTRKRFENKVAVITGAASGIGAATARLLAREGAHVVLADVNDNGGKSIAADLGPTAMAVKCDVSSAAEVEALVKAAVERH
GRIDILFNNAGIGSFGTSVEIQPAEWERVIAIDLHSVYYACHFAIPHMPRGSAIVNTASISGLGGDYRFAAYNAAKGAVV
NYTRALAVDHGRDGIRVNALCPGLVETPITAGVQQMPGLREDWLKRIPMERAAQPEEMASVVAFLASDDASYVTGTIMVA
DGGRTAHTGQPEVAQFALPPEN

Sequences:

>Translated_262_residues
MTRKRFENKVAVITGAASGIGAATARLLAREGAHVVLADVNDNGGKSIAADLGPTAMAVKCDVSSAAEVEALVKAAVERH
GRIDILFNNAGIGSFGTSVEIQPAEWERVIAIDLHSVYYACHFAIPHMPRGSAIVNTASISGLGGDYRFAAYNAAKGAVV
NYTRALAVDHGRDGIRVNALCPGLVETPITAGVQQMPGLREDWLKRIPMERAAQPEEMASVVAFLASDDASYVTGTIMVA
DGGRTAHTGQPEVAQFALPPEN
>Mature_261_residues
TRKRFENKVAVITGAASGIGAATARLLAREGAHVVLADVNDNGGKSIAADLGPTAMAVKCDVSSAAEVEALVKAAVERHG
RIDILFNNAGIGSFGTSVEIQPAEWERVIAIDLHSVYYACHFAIPHMPRGSAIVNTASISGLGGDYRFAAYNAAKGAVVN
YTRALAVDHGRDGIRVNALCPGLVETPITAGVQQMPGLREDWLKRIPMERAAQPEEMASVVAFLASDDASYVTGTIMVAD
GGRTAHTGQPEVAQFALPPEN

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=34, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=35.1464435146443, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=32.824427480916, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=32.9113924050633, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=33.739837398374, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=32.2834645669291, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=32.4444444444444, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=32.8125, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI31542939, Length=266, Percent_Identity=30.4511278195489, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI10190704, Length=266, Percent_Identity=31.9548872180451, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI4758504, Length=249, Percent_Identity=30.5220883534137, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=33.5078534031414, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=32.620320855615, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI83715985, Length=250, Percent_Identity=29.2, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI4503301, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=32.5443786982249, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4504505, Length=252, Percent_Identity=30.1587301587302, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI7705925, Length=235, Percent_Identity=28.0851063829787, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI210032110, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=24.5059288537549, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI226371731, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40807363, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=39.9209486166008, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787335, Length=240, Percent_Identity=33.75, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=31.9672131147541, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=32.5396825396825, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.6, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.1740890688259, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=34.5679012345679, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=35.0806451612903, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=30.8333333333333, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=30.9917355371901, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=29.6, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787526, Length=257, Percent_Identity=23.7354085603113, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=31.2820512820513, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=35.1239669421488, Blast_Score=130, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=33.984375, Blast_Score=128, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=37.9699248120301, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=33.0612244897959, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=34.4569288389513, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=279, Percent_Identity=32.9749103942652, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=32.4427480916031, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=31.0861423220974, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=27.9352226720648, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=33.0827067669173, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=32.9545454545455, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=31.5384615384615, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=32.1285140562249, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=31.6176470588235, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=32.7205882352941, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.5789473684211, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=31.0861423220974, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=30.8550185873606, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17538182, Length=250, Percent_Identity=30, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=30.5147058823529, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=30.3703703703704, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=29.811320754717, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=31.4285714285714, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=30.6878306878307, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=209, Percent_Identity=30.1435406698565, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=28.7878787878788, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=251, Percent_Identity=25.8964143426295, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=30, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=25.8064516129032, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=25.5060728744939, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=25.2525252525253, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=208, Percent_Identity=30.2884615384615, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=27.3092369477912, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=249, Percent_Identity=30.1204819277108, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6320089, Length=190, Percent_Identity=30, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=202, Percent_Identity=23.2673267326733, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=35.0393700787402, Blast_Score=147, Evalue=9e-36,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=35.3174603174603, Blast_Score=145, Evalue=2e-35,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=34.251968503937, Blast_Score=138, Evalue=4e-33,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=35.9504132231405, Blast_Score=133, Evalue=9e-32,
Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=34.6938775510204, Blast_Score=130, Evalue=8e-31,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.8, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI17737361, Length=233, Percent_Identity=34.7639484978541, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=34.2741935483871, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI18859837, Length=249, Percent_Identity=28.9156626506024, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24665243, Length=192, Percent_Identity=31.25, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24665247, Length=193, Percent_Identity=31.6062176165803, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24643142, Length=240, Percent_Identity=28.75, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221331218, Length=188, Percent_Identity=31.3829787234043, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221331216, Length=189, Percent_Identity=31.7460317460317, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24581726, Length=232, Percent_Identity=29.3103448275862, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=201, Percent_Identity=30.8457711442786, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=27.4611398963731, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=30.5418719211823, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 27478; Mature: 27347

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKRFENKVAVITGAASGIGAATARLLAREGAHVVLADVNDNGGKSIAADLGPTAMAVK
CCCHHHCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCEEEEE
CDVSSAAEVEALVKAAVERHGRIDILFNNAGIGSFGTSVEIQPAEWERVIAIDLHSVYYA
ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEHHHHEEE
CHFAIPHMPRGSAIVNTASISGLGGDYRFAAYNAAKGAVVNYTRALAVDHGRDGIRVNAL
EEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEE
CPGLVETPITAGVQQMPGLREDWLKRIPMERAAQPEEMASVVAFLASDDASYVTGTIMVA
CCCHHHCCHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
DGGRTAHTGQPEVAQFALPPEN
CCCCCCCCCCCCCEEEECCCCC
>Mature Secondary Structure 
TRKRFENKVAVITGAASGIGAATARLLAREGAHVVLADVNDNGGKSIAADLGPTAMAVK
CCHHHCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCEEEEE
CDVSSAAEVEALVKAAVERHGRIDILFNNAGIGSFGTSVEIQPAEWERVIAIDLHSVYYA
ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEHHHHEEE
CHFAIPHMPRGSAIVNTASISGLGGDYRFAAYNAAKGAVVNYTRALAVDHGRDGIRVNAL
EEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEE
CPGLVETPITAGVQQMPGLREDWLKRIPMERAAQPEEMASVVAFLASDDASYVTGTIMVA
CCCHHHCCHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
DGGRTAHTGQPEVAQFALPPEN
CCCCCCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]