Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474505

Identifier: 113474505

GI number: 113474505

Start: 1067190

End: 1067384

Strand: Reverse

Name: 113474505

Synonym: Tery_0654

Alternate gene names: NA

Gene position: 1067384-1067190 (Counterclockwise)

Preceding gene: 113474506

Following gene: 113474502

Centisome position: 13.77

GC content: 39.49

Gene sequence:

>195_bases
ATGTCTAAAAAACAAGCCCAATTAATCAATTTTTTGAAGTGGGAGCTGTCCATCTCAGAGTCTGCGATCGCTACTGCTTT
ACGGCATCAGGAAGAAGGCTGTAATCAATTGCCCATGATACTTTGGCAATATGGTCTCGTAACATTGAAACAATTAGACC
AAATATTTGATTGGCTACAAACGGCCAGTGTTTAA

Upstream 100 bases:

>100_bases
TACTGAATAGTAATTTATACTATTCATACTAGATGTAGTTATAAGAAAATAATATTTATTTGAGATTTTTTTAAGGTACT
ACTGAAAACAACTTTTAATT

Downstream 100 bases:

>100_bases
TGAATTGCTTCGCTTAAGCACCATTACACTTATTTTTTCACCTGCAGCATAAAGTATTCAGGGCTGAAAAAGTGTGTAAT
TAATTTTGTGTACTTGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 64; Mature: 63

Protein sequence:

>64_residues
MSKKQAQLINFLKWELSISESAIATALRHQEEGCNQLPMILWQYGLVTLKQLDQIFDWLQTASV

Sequences:

>Translated_64_residues
MSKKQAQLINFLKWELSISESAIATALRHQEEGCNQLPMILWQYGLVTLKQLDQIFDWLQTASV
>Mature_63_residues
SKKQAQLINFLKWELSISESAIATALRHQEEGCNQLPMILWQYGLVTLKQLDQIFDWLQTASV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7407; Mature: 7275

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKQAQLINFLKWELSISESAIATALRHQEEGCNQLPMILWQYGLVTLKQLDQIFDWLQ
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TASV
HCCC
>Mature Secondary Structure 
SKKQAQLINFLKWELSISESAIATALRHQEEGCNQLPMILWQYGLVTLKQLDQIFDWLQ
CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TASV
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA