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The map label for this gene is yciO [C]

Identifier: 113474502

GI number: 113474502

Start: 1063223

End: 1063879

Strand: Reverse

Name: yciO [C]

Synonym: Tery_0651

Alternate gene names: 113474502

Gene position: 1063879-1063223 (Counterclockwise)

Preceding gene: 113474505

Following gene: 113474501

Centisome position: 13.73

GC content: 38.51

Gene sequence:

>657_bases
ATGGCAACTTTTTACGAACTTCATCCTGATACTCCCCAAAATAGACGTGTAGAAAAAATTATCAATGATCTTAAAGATGG
GGCAGTAATGCTTTATCCCACAGATACTGTTTACGCAATAGGTTGTGACCTCTATGTTAAATCTGCTGTAGAAAAAGTTA
GACAAATTAAGCAATTGTCTAATGATAAGCCTCTGACATTCCTCTGTTCCTCTTTGTCCAACATTGCCAATTATGCTGTG
GTGAATGACTCAGCCTACCGGATTATTAAACGTCTAATTCCTGGCCCTTACACATTTGTGCTGCCTGCAACCAAGTTAGT
CCCACGTCTGGTTATGAGTCCAAAACGTAAAACAACCGGTATTCGGGTTCCTAATAATCAAGTTTGCTTGACCTTATTAA
AGGCCTTAGACAATCCTATTATTTCCACATCAGCTAACATTACCAGTGATGCAGAAGGAATAGCTCCAATAAAGGTAGAA
GTAGTCACGGGTAAAGCAGAGTTGTTTGATTGTCTAGAAAATCTTGTGGATATAATTGTAGATGATGGTTCTGACTCAAT
ATATCAAGTATCAACTATCCTTGACTTAACTGGCCATCAGCCAAATCTGATTCGTCAAGGTCTTGGAGTTGAGGCTGTAA
TATCTCTGATTAGTTAA

Upstream 100 bases:

>100_bases
TTAAGGGGATGAAGAAAATATTCGATTCAGTATTTCAAGCATAAGGTTTTAATGGTTGGTACTGATAACTGATAACTGAA
ATAACTTTTGGCTAAAAAAA

Downstream 100 bases:

>100_bases
TACAGCAATTCTCACTGCTGGAAGGGTTAACATTTAGTAGGCAATGTTCCTACACCATAAGAGTTTTACTATTCACAACT
TGTACTTATGATGTACGATC

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MATFYELHPDTPQNRRVEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIANYAV
VNDSAYRIIKRLIPGPYTFVLPATKLVPRLVMSPKRKTTGIRVPNNQVCLTLLKALDNPIISTSANITSDAEGIAPIKVE
VVTGKAELFDCLENLVDIIVDDGSDSIYQVSTILDLTGHQPNLIRQGLGVEAVISLIS

Sequences:

>Translated_218_residues
MATFYELHPDTPQNRRVEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIANYAV
VNDSAYRIIKRLIPGPYTFVLPATKLVPRLVMSPKRKTTGIRVPNNQVCLTLLKALDNPIISTSANITSDAEGIAPIKVE
VVTGKAELFDCLENLVDIIVDDGSDSIYQVSTILDLTGHQPNLIRQGLGVEAVISLIS
>Mature_217_residues
ATFYELHPDTPQNRRVEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIANYAVV
NDSAYRIIKRLIPGPYTFVLPATKLVPRLVMSPKRKTTGIRVPNNQVCLTLLKALDNPIISTSANITSDAEGIAPIKVEV
VTGKAELFDCLENLVDIIVDDGSDSIYQVSTILDLTGHQPNLIRQGLGVEAVISLIS

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=209, Percent_Identity=37.3205741626794, Blast_Score=154, Evalue=3e-39,
Organism=Escherichia coli, GI2367210, Length=149, Percent_Identity=28.8590604026846, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI78707274, Length=200, Percent_Identity=26, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23915; Mature: 23784

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFYELHPDTPQNRRVEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLS
CCCEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHC
NDKPLTFLCSSLSNIANYAVVNDSAYRIIKRLIPGPYTFVLPATKLVPRLVMSPKRKTTG
CCCCHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCC
IRVPNNQVCLTLLKALDNPIISTSANITSDAEGIAPIKVEVVTGKAELFDCLENLVDIIV
EECCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHEE
DDGSDSIYQVSTILDLTGHQPNLIRQGLGVEAVISLIS
CCCCCCEEEHHHHHCCCCCCHHHHHHCCCHHHHHHHHC
>Mature Secondary Structure 
ATFYELHPDTPQNRRVEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLS
CCEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHC
NDKPLTFLCSSLSNIANYAVVNDSAYRIIKRLIPGPYTFVLPATKLVPRLVMSPKRKTTG
CCCCHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCC
IRVPNNQVCLTLLKALDNPIISTSANITSDAEGIAPIKVEVVTGKAELFDCLENLVDIIV
EECCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHEE
DDGSDSIYQVSTILDLTGHQPNLIRQGLGVEAVISLIS
CCCCCCEEEHHHHHCCCCCCHHHHHHCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]