Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
---|---|
Accession | NC_008312 |
Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474506
Identifier: 113474506
GI number: 113474506
Start: 1068070
End: 1068591
Strand: Reverse
Name: 113474506
Synonym: Tery_0655
Alternate gene names: NA
Gene position: 1068591-1068070 (Counterclockwise)
Preceding gene: 113474510
Following gene: 113474505
Centisome position: 13.79
GC content: 37.36
Gene sequence:
>522_bases ATGGTTAGTTATACCTTGGCTCAAAATCCAGATACAATCATAACTGTTAGGGGTAAAGATTCAGACAGGGCCCGTCAAAA AGCTATGGATAAGCTTGTAGAAATGATGGACTCTGGTGAAATACCAACAGAGTTAGAAAATGGATTTAGTCCGGAACAGT TTATTGAGGTCAAAGAATCAAAAGAAGTAACCAAAGAGATTATTTCTGAGGAGGAAGATGCTGTTGCTCAAGCAGTACAG ACGCTTAGTGATTTTGCTGCACTTAAGATTAAAGTTGTAGAATCTCGAGAAGAAGCATTAAAGATTCTGTCTGCAATTGA GGTACTATTTACAGATGAAACTGTAACAGTTGAGGAAATTGCTAACCTTAGGGATGGTTTTAAGATACTAAAAACTTTTG CTGTAGCTAATTTACGTTACAGGGAAGCAAGAGATAAAGCACAAAAAGCTCGTGTTATCCTTGATCAAGCATTCAGTTGT GCGGAGTCAGAATTAAACCATCTTTCTAGATCCAGAAAGTAG
Upstream 100 bases:
>100_bases CCTATTGGCTACTCCATAAAAATACTTTTTCGGTAAACCCTAATTAATTTTGCTGTATATTAATTATGTTTATACCATTA CGTTTACATTTAGTCAGATT
Downstream 100 bases:
>100_bases CTCCCAAACAGATTTTGATTCCCAATTTATTAAATGTCTCTATCTGTAAATATTTACTGTATTAGTCTAGTATAAATTTA GTAATCAAAAGTGTTGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MVSYTLAQNPDTIITVRGKDSDRARQKAMDKLVEMMDSGEIPTELENGFSPEQFIEVKESKEVTKEIISEEEDAVAQAVQ TLSDFAALKIKVVESREEALKILSAIEVLFTDETVTVEEIANLRDGFKILKTFAVANLRYREARDKAQKARVILDQAFSC AESELNHLSRSRK
Sequences:
>Translated_173_residues MVSYTLAQNPDTIITVRGKDSDRARQKAMDKLVEMMDSGEIPTELENGFSPEQFIEVKESKEVTKEIISEEEDAVAQAVQ TLSDFAALKIKVVESREEALKILSAIEVLFTDETVTVEEIANLRDGFKILKTFAVANLRYREARDKAQKARVILDQAFSC AESELNHLSRSRK >Mature_173_residues MVSYTLAQNPDTIITVRGKDSDRARQKAMDKLVEMMDSGEIPTELENGFSPEQFIEVKESKEVTKEIISEEEDAVAQAVQ TLSDFAALKIKVVESREEALKILSAIEVLFTDETVTVEEIANLRDGFKILKTFAVANLRYREARDKAQKARVILDQAFSC AESELNHLSRSRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19498; Mature: 19498
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSYTLAQNPDTIITVRGKDSDRARQKAMDKLVEMMDSGEIPTELENGFSPEQFIEVKES CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHH KEVTKEIISEEEDAVAQAVQTLSDFAALKIKVVESREEALKILSAIEVLFTDETVTVEEI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH ANLRDGFKILKTFAVANLRYREARDKAQKARVILDQAFSCAESELNHLSRSRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVSYTLAQNPDTIITVRGKDSDRARQKAMDKLVEMMDSGEIPTELENGFSPEQFIEVKES CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHH KEVTKEIISEEEDAVAQAVQTLSDFAALKIKVVESREEALKILSAIEVLFTDETVTVEEI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH ANLRDGFKILKTFAVANLRYREARDKAQKARVILDQAFSCAESELNHLSRSRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA