| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474387
Identifier: 113474387
GI number: 113474387
Start: 827206
End: 828897
Strand: Reverse
Name: 113474387
Synonym: Tery_0523
Alternate gene names: NA
Gene position: 828897-827206 (Counterclockwise)
Preceding gene: 113474396
Following gene: 113474386
Centisome position: 10.7
GC content: 38.53
Gene sequence:
>1692_bases ATGAAACTACCACAACAACCGACAATACCGAATACTCAAAATATTATCTCTTGGCTAAAATTCCAAAGCCCCTCACAGCT TGAAAACCTAGAGTCTGTGAACAAAACCTCTAAAAAGAACCCTCTTTTCTGGTGTTATTGGTTAAAAAATCTGGTTTGCG TCGATCCCAATGAACTACATGGCACCGGTTATGTATCTAAAGAATTAGAAAAATCCTCTCTAGTAACAGCCTCCGTTACA ACCTTTGCCAATTGGTGGAATGCATTCACAACCTTGCCATTCTTAATTTTTATGTTCGACAGCATGGGAATACTCACCTG GCCTATTGCTGTATTGGCTAACATAGGGCTAATTAAACTAGGCAACGCTCTCGCTACCGGTGCCGCCTCCAATCAACCCA TAAGCATACGCTTTGCTCGAATTGGTAGCAGCGGTTTCATTGCCATCAACCTCATCCTAACCATCACATCAGGAGTCGGT TCAGAACTACTATTAAATCAATCCGGTTTGAGTCGAAAATTGGGAGAACAGTTAGTTCAAGAATCTATTTTTGAACCTTT GGAAAAGGAAATTTCAGATATTCAAAATAATAAAACTCTGGAGAAAACTCGCAACAGATGTGATACCTTAGAGCGTAAGC TCGAACAACTGCCCCCCAACGACCCCAAAAGGGATGAACTCTACCTAGCTGCTCATGGTCCATATGCAGATAGATTTAAC CTGGGCGGTTATAGCTACTATAAAAACAAGGACATAGAACAATGGCCTGCATGTCCTAAAGCTAACGAGCTAGAAGCTAT AAGGGATAACGATCTCAAAGTTCCCAAGGAAAAGTACCAGCAAAAAATAAAAGAAGTCAAAAACTATGGTAGTGATCTAG TCTACCTCAAAGCGGTTAGACCCAAAATTTATGACTCACGGTTTAATGAAAAAGGAGAAATTAAATCTGGAACAGAAGCA ACAAGAGTAGCAATAGTATTATTCACCAAGAAATTATTTAGCCTTCAGTGGGCAGACCTCGGACAGAGTCTATTTGTTAT GAGCATATCCGTGATCACCTCAACTGTAGCTATCTGGATCACCATTTCTTATTCAAAACGAGAAGATGTTCAACTTTCTA AAAGTACAGCAGTAATTAACGCCAGAGATGTGTTCATTAATAAGACTATTTCTAGCTTAGACAACAACCAAGCAGACATG CAAGAACTGGACAAGAAGCTGTTAAGAGGATTTTTTAGCGAGCTAAGACGCACTGGAAAGTGCAATTATCCACCCTTTGT TAAGTACGTCAAATTTGCCAGAGATATCGAAAAATCCCAGCATTTAAGAGACAATATAGAAACAGTTGAAACTGCTGTAG AACAAATTAAAAATGGTTTTCAGCAGTTAACAGATAGTATCAACGACCCAGAAAATACTGCCGCTAACGATGCTAAAAAC CTTATTCATCAAGGATGTGATTCTATCATACTCTTAGCCTTAGAATACTTCCAGACGGAATCTCAGGTTAAGGAATTAAT TAAAACAATACAATATGTACAAGGATATCTACAACATTCCCATGTAAATCAATCATTAGCAACTCGCCAAATTGGCTACC TGCAAGAGCTATTAACTTCCAGTATTAATTTAGGCGATCGCCTAAAGAAAGCTATTCAAAAAAAATATAACACCATCATA GGAAATCACTAA
Upstream 100 bases:
>100_bases TGAAATTATTTTTGCAACAAAATCAATTTTCTCACCGATAGAAAAATATTCCTCACTCAACCCAATTGATCAAACCCATA AAACCAAAAAAACACAACTC
Downstream 100 bases:
>100_bases TGTCTACCCAAAAATTACCAGTAAATTTCAAATATAAACTTGATCATGATAGCACAAAAATGGTTCCAAGTAAGCAAGAA AAACAAAATTTCATTGAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 563; Mature: 563
Protein sequence:
>563_residues MKLPQQPTIPNTQNIISWLKFQSPSQLENLESVNKTSKKNPLFWCYWLKNLVCVDPNELHGTGYVSKELEKSSLVTASVT TFANWWNAFTTLPFLIFMFDSMGILTWPIAVLANIGLIKLGNALATGAASNQPISIRFARIGSSGFIAINLILTITSGVG SELLLNQSGLSRKLGEQLVQESIFEPLEKEISDIQNNKTLEKTRNRCDTLERKLEQLPPNDPKRDELYLAAHGPYADRFN LGGYSYYKNKDIEQWPACPKANELEAIRDNDLKVPKEKYQQKIKEVKNYGSDLVYLKAVRPKIYDSRFNEKGEIKSGTEA TRVAIVLFTKKLFSLQWADLGQSLFVMSISVITSTVAIWITISYSKREDVQLSKSTAVINARDVFINKTISSLDNNQADM QELDKKLLRGFFSELRRTGKCNYPPFVKYVKFARDIEKSQHLRDNIETVETAVEQIKNGFQQLTDSINDPENTAANDAKN LIHQGCDSIILLALEYFQTESQVKELIKTIQYVQGYLQHSHVNQSLATRQIGYLQELLTSSINLGDRLKKAIQKKYNTII GNH
Sequences:
>Translated_563_residues MKLPQQPTIPNTQNIISWLKFQSPSQLENLESVNKTSKKNPLFWCYWLKNLVCVDPNELHGTGYVSKELEKSSLVTASVT TFANWWNAFTTLPFLIFMFDSMGILTWPIAVLANIGLIKLGNALATGAASNQPISIRFARIGSSGFIAINLILTITSGVG SELLLNQSGLSRKLGEQLVQESIFEPLEKEISDIQNNKTLEKTRNRCDTLERKLEQLPPNDPKRDELYLAAHGPYADRFN LGGYSYYKNKDIEQWPACPKANELEAIRDNDLKVPKEKYQQKIKEVKNYGSDLVYLKAVRPKIYDSRFNEKGEIKSGTEA TRVAIVLFTKKLFSLQWADLGQSLFVMSISVITSTVAIWITISYSKREDVQLSKSTAVINARDVFINKTISSLDNNQADM QELDKKLLRGFFSELRRTGKCNYPPFVKYVKFARDIEKSQHLRDNIETVETAVEQIKNGFQQLTDSINDPENTAANDAKN LIHQGCDSIILLALEYFQTESQVKELIKTIQYVQGYLQHSHVNQSLATRQIGYLQELLTSSINLGDRLKKAIQKKYNTII GNH >Mature_563_residues MKLPQQPTIPNTQNIISWLKFQSPSQLENLESVNKTSKKNPLFWCYWLKNLVCVDPNELHGTGYVSKELEKSSLVTASVT TFANWWNAFTTLPFLIFMFDSMGILTWPIAVLANIGLIKLGNALATGAASNQPISIRFARIGSSGFIAINLILTITSGVG SELLLNQSGLSRKLGEQLVQESIFEPLEKEISDIQNNKTLEKTRNRCDTLERKLEQLPPNDPKRDELYLAAHGPYADRFN LGGYSYYKNKDIEQWPACPKANELEAIRDNDLKVPKEKYQQKIKEVKNYGSDLVYLKAVRPKIYDSRFNEKGEIKSGTEA TRVAIVLFTKKLFSLQWADLGQSLFVMSISVITSTVAIWITISYSKREDVQLSKSTAVINARDVFINKTISSLDNNQADM QELDKKLLRGFFSELRRTGKCNYPPFVKYVKFARDIEKSQHLRDNIETVETAVEQIKNGFQQLTDSINDPENTAANDAKN LIHQGCDSIILLALEYFQTESQVKELIKTIQYVQGYLQHSHVNQSLATRQIGYLQELLTSSINLGDRLKKAIQKKYNTII GNH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63838; Mature: 63838
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPQQPTIPNTQNIISWLKFQSPSQLENLESVNKTSKKNPLFWCYWLKNLVCVDPNELH CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCC GTGYVSKELEKSSLVTASVTTFANWWNAFTTLPFLIFMFDSMGILTWPIAVLANIGLIKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHEE GNALATGAASNQPISIRFARIGSSGFIAINLILTITSGVGSELLLNQSGLSRKLGEQLVQ CCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHCCCCCHHHCCCCCHHHHHHHHHHH ESIFEPLEKEISDIQNNKTLEKTRNRCDTLERKLEQLPPNDPKRDELYLAAHGPYADRFN HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC LGGYSYYKNKDIEQWPACPKANELEAIRDNDLKVPKEKYQQKIKEVKNYGSDLVYLKAVR CCCEECCCCCCCHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC PKIYDSRFNEKGEIKSGTEATRVAIVLFTKKLFSLQWADLGQSLFVMSISVITSTVAIWI CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEE TISYSKREDVQLSKSTAVINARDVFINKTISSLDNNQADMQELDKKLLRGFFSELRRTGK EEEECCCCCCEECCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC CNYPPFVKYVKFARDIEKSQHLRDNIETVETAVEQIKNGFQQLTDSINDPENTAANDAKN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LIHQGCDSIILLALEYFQTESQVKELIKTIQYVQGYLQHSHVNQSLATRQIGYLQELLTS HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SINLGDRLKKAIQKKYNTIIGNH HCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKLPQQPTIPNTQNIISWLKFQSPSQLENLESVNKTSKKNPLFWCYWLKNLVCVDPNELH CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCC GTGYVSKELEKSSLVTASVTTFANWWNAFTTLPFLIFMFDSMGILTWPIAVLANIGLIKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHEE GNALATGAASNQPISIRFARIGSSGFIAINLILTITSGVGSELLLNQSGLSRKLGEQLVQ CCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHCCCCCHHHCCCCCHHHHHHHHHHH ESIFEPLEKEISDIQNNKTLEKTRNRCDTLERKLEQLPPNDPKRDELYLAAHGPYADRFN HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC LGGYSYYKNKDIEQWPACPKANELEAIRDNDLKVPKEKYQQKIKEVKNYGSDLVYLKAVR CCCEECCCCCCCHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC PKIYDSRFNEKGEIKSGTEATRVAIVLFTKKLFSLQWADLGQSLFVMSISVITSTVAIWI CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEE TISYSKREDVQLSKSTAVINARDVFINKTISSLDNNQADMQELDKKLLRGFFSELRRTGK EEEECCCCCCEECCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC CNYPPFVKYVKFARDIEKSQHLRDNIETVETAVEQIKNGFQQLTDSINDPENTAANDAKN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LIHQGCDSIILLALEYFQTESQVKELIKTIQYVQGYLQHSHVNQSLATRQIGYLQELLTS HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SINLGDRLKKAIQKKYNTIIGNH HCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA