Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488213

Identifier: 103488213

GI number: 103488213

Start: 2881629

End: 2883887

Strand: Reverse

Name: 103488213

Synonym: Sala_2736

Alternate gene names: NA

Gene position: 2883887-2881629 (Counterclockwise)

Preceding gene: 103488214

Following gene: 103488212

Centisome position: 86.21

GC content: 66.67

Gene sequence:

>2259_bases
ATGATCGCAACATCTCCGCCGCGCCGCTGGCTGTTCGTGCTGACGATCCTTGTCGGCAGCTTCCTCCTCTTCATGGTGCA
GCCGATGGTCGCGCGCATGGTCCTGCCAAGGCTGGGCGGTGCGCCAATGGTGTGGAACAGCGCGATGCTGGTCTATCAGG
CGCTGCTCCTCGGCGGCTATGCCTATGCGCACTGGCTCGGGCGTTTCAGCCTGCGGCGACAGGCGATCATCCATCTTGCG
CTCTTTCTCGTTGCGGCGCTTTGGCTGCCGATCGGTATCGCCGCGATTGCGCCGCCGGGGCCGGGACAGGAGGCGCTGTG
GGTGCCGCTCCTCCTCTTCGCGTCGATCGGCCCCGTCTTTTTTGTCGTATCGGCGCAGGCGCCGCTGATGCAGCGCTGGT
TCGCCGCCGACCCGAAAGCCGGCGATCCCTATTATCTCTATGCCGCCTCGAACCTCGGCAGCTTTGCGGGGCTGCTCAGC
TATCCCGCGCTGGTCGAGCCCAACATGCCGCTGGCGGCGCAGAGCTGGGGCTGGAGCGCCGGTTATGCGCTGCTTGTGCT
GCTCGTCGTCGCGGCGGCGGCCGCGCGTTGGCACGGAGCCAGCGGCGTACAGCTCGACGAACCGGCCGACGCGCCGCGCC
CCTCGCTCCGGCGCCAGCTTCATTGGCTGCTGATCGCCGCGGTGCCGTCGGGGCTGATGCTGTCGACGACGACGCACCTC
ACCACCGACATCGTCGCGATGCCTTTGCTCTGGGTGTTGCCGCTGGGCCTCTATCTGTTCAGCTTCGTCATCGCCTTTTC
GCGCTTCGAGCGGCCGACCGAGATCATCGCGCTGCTCGCCCCGATCGTGCTGCTTTCCGTCGGCGGGCTCGGGCTTTTGA
GTTCGGGCGGCGGGTCGATGACGATTGCGCTGTCCAGCCTGGCGATGCTCTTCATCGTCGCGACCGCGCTCCACGGCTAT
CTCTATTACCTGCGGCCCGCTGCCCGGCATCTGACGCTTTTCTATCTGCTCATGTCGGCGGGCGGTGTGCTCGGCGGCTT
GTTTGCCGCCTTGTTCGCGCCGCTCCTTTTCGACTGGGTGTATGAACATCCGCTGCTGATCCTCGCTGCGGGCTTGCTGT
TGCCCCTGCCGACGCTTTTCCCCTGGGACAAGTGGCTGGGCCTTGAACCCAAAACGGCGCGGGCGTCGGCGGCGCTGCTC
GTTGCGATCGCCGCGCTTGCCGCGTGGAACATGGTCGAACGATGGACCGGGCGCGCCGACGGCGACATTGCCGCATGGGG
CATCGCCATCTTCGTCATCGGCATCCTCGTCATCGGATGGCGCTGGGCCTATGTGTCGGTGCTGGCGTTGCTGATGATCG
GTGTCGGTGGCTGGGACACGATCCGGGAAAGCTTCACGGGCGCGCGCGTGCGCAGCTATTTCGGCGTCTACACGGTCACC
GACTATCCGCATGCCAACCAGCGGCGGCTTGCGCATGGCACGACGCTTCACGGGCTTCAGCGCACCGATGCGGAACAACG
CCGCCAGCCGACGACCTATTATGGCCCCCAATCGGGAGTTGGCCTGACGCTCGCGCAGGCCGAAACGCTCGCGGGTTCCG
ACGCGGCGGTCGCGATCGTCGGGCTCGGCGCCGGCACGCTCGCCTGTTACCGCAAGCCGGGGCAGGACTGGACGATTTTC
GAGATCGATCCCGTGATGGTGGACATCGCGCGCGATCCCGACAAGTTCACCTTTCTGTCGGACTGCGCTCCCGATGCGGC
GATCGTCATCGGCGACGCGCGGCTTCAACTCGCGAACCAGCCGCCGGGGCGCTTCGACATTGTCGTCATCGACGCCTTTT
CGTCCGACGCGATTCCGCTCCACCTGCTGACCAGCGAGGCGATCGGCATTTATGCGCGCGCGATGAAGCCCGATGGCGTC
CTGCTCATCCATATCTCCAACCGCTTTTTCGCGCTGGAGCCCGTGCTCGCGGCCGAAGCGAAGGCGCGCGGCTGGAGCGC
GGCGATCCGCATGGACCCCGGCCCCGCGAGCGGCAGCGACTATGACGACCTGACCGCGTCGAGCTGGGTTGCGCTCACCG
CGACGCCCGACCGGATGCGGCAACTCACCGGCGGGATCCGTCCGCGCGACGAATCCCCTGCCGATGGCGCGTGGGTGCCG
CTGGCTGCCAAAGCCGGTTTCGAGCGCTGGACCGACGATTATGCCTCGACGCTGCCCGTGCTCATCTGGAAGAATGTGAT
CGGAGGCCGCGACGAATGA

Upstream 100 bases:

>100_bases
ATCCTCCTCGAAACCCTGCTCGCTTTTCGCCGCGCGGGGGCGTCGGGGGTGCTCAGTTACCACGCGCTCCACGCGGCGCG
GCTGCTTGGCGCCTGACGCG

Downstream 100 bases:

>100_bases
TTCGTTCCGATGTCAGCATCATCAGCGTGGGCGGAAAGGCACCACGGATCGACCCCAGCGCCTTCATCGCGCCCGGTTGC
CGGATCATCGGCGACGTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Spermine/Spermidine Synthase Protein; Integral Membrane Protein-Like; Ferrichrome ABC Transporter Permease; Integral Membrane Protein

Number of amino acids: Translated: 752; Mature: 752

Protein sequence:

>752_residues
MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGYAYAHWLGRFSLRRQAIIHLA
LFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVFFVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLS
YPALVEPNMPLAAQSWGWSAGYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL
TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSMTIALSSLAMLFIVATALHGY
LYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWVYEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALL
VAIAALAAWNMVERWTGRADGDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT
DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIVGLGAGTLACYRKPGQDWTIF
EIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQPPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGV
LLIHISNRFFALEPVLAAEAKARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP
LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE

Sequences:

>Translated_752_residues
MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGYAYAHWLGRFSLRRQAIIHLA
LFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVFFVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLS
YPALVEPNMPLAAQSWGWSAGYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL
TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSMTIALSSLAMLFIVATALHGY
LYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWVYEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALL
VAIAALAAWNMVERWTGRADGDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT
DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIVGLGAGTLACYRKPGQDWTIF
EIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQPPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGV
LLIHISNRFFALEPVLAAEAKARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP
LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE
>Mature_752_residues
MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGYAYAHWLGRFSLRRQAIIHLA
LFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVFFVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLS
YPALVEPNMPLAAQSWGWSAGYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL
TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSMTIALSSLAMLFIVATALHGY
LYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWVYEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALL
VAIAALAAWNMVERWTGRADGDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT
DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIVGLGAGTLACYRKPGQDWTIF
EIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQPPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGV
LLIHISNRFFALEPVLAAEAKARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP
LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81180; Mature: 81180

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AYAHWLGRFSLRRQAIIHLALFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCEE
FVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLSYPALVEPNMPLAAQSWGWSA
EEEECCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCEECCCCCCCCCCCCCCH
GYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHH
TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEE
TIALSSLAMLFIVATALHGYLYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALLVAIAALAAWNMVERWTGRAD
HHCHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCEEEEE
DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIV
CCCCCCCCHHHCCCHHCCCHHCCHHHHCCCCCCCCCCCCCCEEEEHHHHHCCCCCEEEEE
GLGAGTLACYRKPGQDWTIFEIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQ
ECCCCHHHHCCCCCCCEEEEEECCEEEEECCCCCCEEEHHCCCCCCEEEEECCEEEECCC
PPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGVLLIHISNRFFALEPVLAAEA
CCCCEEEEEEEECCCCCEEEEEECHHHHHHEEEEECCCCEEEEEECCCEEEECHHHHHHH
KARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP
HCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCEEE
LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE
EHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AYAHWLGRFSLRRQAIIHLALFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCEE
FVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLSYPALVEPNMPLAAQSWGWSA
EEEECCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCEECCCCCCCCCCCCCCH
GYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHH
TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEE
TIALSSLAMLFIVATALHGYLYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALLVAIAALAAWNMVERWTGRAD
HHCHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCEEEEE
DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIV
CCCCCCCCHHHCCCHHCCCHHCCHHHHCCCCCCCCCCCCCCEEEEHHHHHCCCCCEEEEE
GLGAGTLACYRKPGQDWTIFEIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQ
ECCCCHHHHCCCCCCCEEEEEECCEEEEECCCCCCEEEHHCCCCCCEEEEECCEEEECCC
PPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGVLLIHISNRFFALEPVLAAEA
CCCCEEEEEEEECCCCCEEEEEECHHHHHHEEEEECCCCEEEEEECCCEEEECHHHHHHH
KARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP
HCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCEEE
LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE
EHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA