| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487998
Identifier: 103487998
GI number: 103487998
Start: 2655095
End: 2656693
Strand: Reverse
Name: 103487998
Synonym: Sala_2519
Alternate gene names: NA
Gene position: 2656693-2655095 (Counterclockwise)
Preceding gene: 103487999
Following gene: 103487997
Centisome position: 79.42
GC content: 62.1
Gene sequence:
>1599_bases ATGGCACAGTTTCAAATCCTTTGCCCGCACTCGGAAGCCGAGTGGCGGCCGGTCACGATCGAATTCCTTTTCGCACCCAA TGGCGACCAGCAATATCTTTGGCCTTCCTTTGACGAAGCCGAAGCCGCGCGGAAACAGCTTCTCCTCCGCGCGCCCGATG CGCAGCTCCGGATCGCGCTCGCGGACGCCGAGATCGGCGACGTCGACTGGCCGGTTCGCGAGAAATTGCGGTTCGCCGAC GGCACCTATGCGCCGACGCCCTGGCATGAGGAGCCCTGGTATCAGGAGAAGCACGAAGAGCATTTCTGCCATGTCTCGAC CGAGCAGGCGGGCAAGATCGCTTTCACCGAGAATGCGGCGAAGGGCGAGGTCGACCGCCAGCTCGTGATGTCGCCGGGCC GCTACCTTAATCGCTTCTTTTCTGCCCATCTGGACAATGAAGCGATCGAGGGCTGGTGCGCCCGGCTTTCGGTCCAGCTT GCAGAAGATGCGCTCAAGATCACGCAGGACGCCGACGAAATCGAGGAGGTTTATGTCGGCGGTCCCGGCAGCTGCATGTC GCACGGCGCGAGCGACTTCGAGAGCTATTGCCACCCGGTGCGCGTCTATGCCGGTCCCGACACGGCGCTCGCCTATATCG GCGCCCGCGACGATGCCCGCGCGCGCAGCGTGGTGTGGCCCGAACTCAAAATCTACACCAGCATCTATGGCGATGTATCG CGGCTCAAGCTGCTGCTCGAAAATGCGGGCTATGCGAAGGGCAGCCTCAATGGCGCACGCATCCGGCGGCTCGTCGATGG CGGCAGCTTCGTCGTTCCCTATATCGATGCGGGCGATGACCTCGCCGACGACGGCGAATATCTCATCATCGGCCATGGTG AGATCCCGTCCGAGAATACCAACGGCCTGGGGGACCGATGTTGGTACTGCCCGCGGTGCGACCGCGAAACGACGCCGCAT GAGGAAGTCTATTTCGGCGACGGCTCGTCGGAAGAATGGTGCTATAATTGCTTCACCGATCACACGACCTTCTGCGCGCA TAATGAGCGCAGCTACAGCGATGCCGAAACCTTCATCCCGGTGCTCGCCGATGGCGATGAGCATGACGTGCTTGACGGTT ATGTCGAGGCCTTCGGTGCGGTGTACATCGAAGATCGCGGCGAATGGTGGCTCGCGACCTGCTGCCGGAAATGCGATGCC TCGGGCGAATGGTATCATGCGACTGATCTCACCGAATATCATGGTGAATGGCTTTGTGCGGATTATCTGCCCGATCCTGT CGACGATGACGATCCATCGCTCGCCAATGCCCATGTCCTCGCTCGCGACTGGTTTCGGTACGAAATGTCGGCGATCGAAC TCGAGGTCGCCAAATGGCAGGCAGCCGGTGAGCGTGCCCGCGAAGAACGGCTGAGGCACGAACGGGAAGCAGCCGAGCGA CCTCGCCTCGAAGACTTGCGACGTGGATCTCTTCCGCCGTGCAGCTGTGCCTGCGCGCACGGCTATCCTCCCGACATGCC GACGCCGGTCGATGGCCTCACCTCCGCCGCCGCAGCGCCTCTGGCAGCGACCGCAACCCCTTGCCAGACAGGAGCCTGA
Upstream 100 bases:
>100_bases CTGACCCCCGACCCTCGCTAACCCTGCGCCACCCCATCAGCAATGCAGCCCGCGATCGCGCCTCTTCGGGGCATGCGCGC GGCTGCGCGGAGTCCCATCC
Downstream 100 bases:
>100_bases TCCATGACCCATGACCTTGCGGGCCGCGCCGGCCTCCTCGAAATCCTGTCCTGGGCACGGCCCCATGACAGCGCGACCGA ACGCGCCTTCTGCCGCGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 532; Mature: 531
Protein sequence:
>532_residues MAQFQILCPHSEAEWRPVTIEFLFAPNGDQQYLWPSFDEAEAARKQLLLRAPDAQLRIALADAEIGDVDWPVREKLRFAD GTYAPTPWHEEPWYQEKHEEHFCHVSTEQAGKIAFTENAAKGEVDRQLVMSPGRYLNRFFSAHLDNEAIEGWCARLSVQL AEDALKITQDADEIEEVYVGGPGSCMSHGASDFESYCHPVRVYAGPDTALAYIGARDDARARSVVWPELKIYTSIYGDVS RLKLLLENAGYAKGSLNGARIRRLVDGGSFVVPYIDAGDDLADDGEYLIIGHGEIPSENTNGLGDRCWYCPRCDRETTPH EEVYFGDGSSEEWCYNCFTDHTTFCAHNERSYSDAETFIPVLADGDEHDVLDGYVEAFGAVYIEDRGEWWLATCCRKCDA SGEWYHATDLTEYHGEWLCADYLPDPVDDDDPSLANAHVLARDWFRYEMSAIELEVAKWQAAGERAREERLRHEREAAER PRLEDLRRGSLPPCSCACAHGYPPDMPTPVDGLTSAAAAPLAATATPCQTGA
Sequences:
>Translated_532_residues MAQFQILCPHSEAEWRPVTIEFLFAPNGDQQYLWPSFDEAEAARKQLLLRAPDAQLRIALADAEIGDVDWPVREKLRFAD GTYAPTPWHEEPWYQEKHEEHFCHVSTEQAGKIAFTENAAKGEVDRQLVMSPGRYLNRFFSAHLDNEAIEGWCARLSVQL AEDALKITQDADEIEEVYVGGPGSCMSHGASDFESYCHPVRVYAGPDTALAYIGARDDARARSVVWPELKIYTSIYGDVS RLKLLLENAGYAKGSLNGARIRRLVDGGSFVVPYIDAGDDLADDGEYLIIGHGEIPSENTNGLGDRCWYCPRCDRETTPH EEVYFGDGSSEEWCYNCFTDHTTFCAHNERSYSDAETFIPVLADGDEHDVLDGYVEAFGAVYIEDRGEWWLATCCRKCDA SGEWYHATDLTEYHGEWLCADYLPDPVDDDDPSLANAHVLARDWFRYEMSAIELEVAKWQAAGERAREERLRHEREAAER PRLEDLRRGSLPPCSCACAHGYPPDMPTPVDGLTSAAAAPLAATATPCQTGA >Mature_531_residues AQFQILCPHSEAEWRPVTIEFLFAPNGDQQYLWPSFDEAEAARKQLLLRAPDAQLRIALADAEIGDVDWPVREKLRFADG TYAPTPWHEEPWYQEKHEEHFCHVSTEQAGKIAFTENAAKGEVDRQLVMSPGRYLNRFFSAHLDNEAIEGWCARLSVQLA EDALKITQDADEIEEVYVGGPGSCMSHGASDFESYCHPVRVYAGPDTALAYIGARDDARARSVVWPELKIYTSIYGDVSR LKLLLENAGYAKGSLNGARIRRLVDGGSFVVPYIDAGDDLADDGEYLIIGHGEIPSENTNGLGDRCWYCPRCDRETTPHE EVYFGDGSSEEWCYNCFTDHTTFCAHNERSYSDAETFIPVLADGDEHDVLDGYVEAFGAVYIEDRGEWWLATCCRKCDAS GEWYHATDLTEYHGEWLCADYLPDPVDDDDPSLANAHVLARDWFRYEMSAIELEVAKWQAAGERAREERLRHEREAAERP RLEDLRRGSLPPCSCACAHGYPPDMPTPVDGLTSAAAAPLAATATPCQTGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59559; Mature: 59428
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQFQILCPHSEAEWRPVTIEFLFAPNGDQQYLWPSFDEAEAARKQLLLRAPDAQLRIAL CCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEEEE ADAEIGDVDWPVREKLRFADGTYAPTPWHEEPWYQEKHEEHFCHVSTEQAGKIAFTENAA ECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCEEEECCCCCCCEEEECCCC KGEVDRQLVMSPGRYLNRFFSAHLDNEAIEGWCARLSVQLAEDALKITQDADEIEEVYVG CCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEC GPGSCMSHGASDFESYCHPVRVYAGPDTALAYIGARDDARARSVVWPELKIYTSIYGDVS CCCHHHHCCHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCCEEHHHHHCCHH RLKLLLENAGYAKGSLNGARIRRLVDGGSFVVPYIDAGDDLADDGEYLIIGHGEIPSENT HHHHHHHCCCCCCCCCCHHHHHHEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC NGLGDRCWYCPRCDRETTPHEEVYFGDGSSEEWCYNCFTDHTTFCAHNERSYSDAETFIP CCCCCCCEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCHHHEEE VLADGDEHDVLDGYVEAFGAVYIEDRGEWWLATCCRKCDASGEWYHATDLTEYHGEWLCA EEECCCCCHHHHHHHHHHCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCHHHCCCEEEE DYLPDPVDDDDPSLANAHVLARDWFRYEMSAIELEVAKWQAAGERAREERLRHEREAAER CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHC PRLEDLRRGSLPPCSCACAHGYPPDMPTPVDGLTSAAAAPLAATATPCQTGA CCHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure AQFQILCPHSEAEWRPVTIEFLFAPNGDQQYLWPSFDEAEAARKQLLLRAPDAQLRIAL CCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEEEE ADAEIGDVDWPVREKLRFADGTYAPTPWHEEPWYQEKHEEHFCHVSTEQAGKIAFTENAA ECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCEEEECCCCCCCEEEECCCC KGEVDRQLVMSPGRYLNRFFSAHLDNEAIEGWCARLSVQLAEDALKITQDADEIEEVYVG CCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEC GPGSCMSHGASDFESYCHPVRVYAGPDTALAYIGARDDARARSVVWPELKIYTSIYGDVS CCCHHHHCCHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCCEEHHHHHCCHH RLKLLLENAGYAKGSLNGARIRRLVDGGSFVVPYIDAGDDLADDGEYLIIGHGEIPSENT HHHHHHHCCCCCCCCCCHHHHHHEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC NGLGDRCWYCPRCDRETTPHEEVYFGDGSSEEWCYNCFTDHTTFCAHNERSYSDAETFIP CCCCCCCEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCHHHEEE VLADGDEHDVLDGYVEAFGAVYIEDRGEWWLATCCRKCDASGEWYHATDLTEYHGEWLCA EEECCCCCHHHHHHHHHHCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCHHHCCCEEEE DYLPDPVDDDDPSLANAHVLARDWFRYEMSAIELEVAKWQAAGERAREERLRHEREAAER CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHC PRLEDLRRGSLPPCSCACAHGYPPDMPTPVDGLTSAAAAPLAATATPCQTGA CCHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA