Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487996

Identifier: 103487996

GI number: 103487996

Start: 2652821

End: 2653873

Strand: Reverse

Name: 103487996

Synonym: Sala_2517

Alternate gene names: NA

Gene position: 2653873-2652821 (Counterclockwise)

Preceding gene: 103487997

Following gene: 103487995

Centisome position: 79.33

GC content: 67.24

Gene sequence:

>1053_bases
ATGGAAAGTCCAGCCCGTGAATTGGCGCGCCGCCTCGCCGACAATGCCGAAGCCGTCTGCCGCCACTATCTCCCCAACGG
CCGCCGCGAAGGCCGCTACTGGCTTGTCGGCGATGTCCGGGGGACGCCCGGTCGCAGCCTTTACCTGTTGCTGTCGTCGT
CGGGCGACGGGCGCGGCCGGGCGGGGAAATGGACCGATGCCGCGAGCGGCGAGCATGGCGACCTGCTCGATGTCATCGCC
GCCAGTTGCGGTCACGCCGAATTGCGCGAGACGCTCGCCGAGGCGCGGCGATTTTTGAGCATGCCGATGTCGATGCCGCA
GCCGGCGGGGTCTCGATCGCCGCGATCGCGCAAGGCGTCGACGGGAACGCCTGCGGCGGCGCGGCGGCTTTGGGATGGGT
CGAAGCCGATCGCCGGGACGTTGGCCGCTGCTTATCTTGCATCGCGTGGGATCGATATCGACCCAGGCAATGGTGCCATC
CGCTTTCATCCGCGCTGCCATTACCGGGCATCAAGCGATGACCCGCCCGATGTCCGTCCCGCCTGGCCGGCCATGATCGC
TGCGGTAACCGATGACGCCGGTCAAATCTCCGGCGTTCATCGCACCTGGCTCGATCCGGCGAGCGGCAAGGCGCCCGTCG
CCTGTCCCCGCCGCGCGATGGGGAATCTGCTTGGGCATGGCGTGCGGTTCGGACCTGCTGCGGACGTCATGGCCGCTGGC
GAAGGTATCGAGACGCTCCTGTCGCTACGCGAGCTGATGCCGGACATGCCGATGATCGCCGGTCTGTCGGCGGCGCATCT
CGCCGCCATCCACTTCCCCCAACCGCTGCGCCGTCTCTATGTTGCGCGCGACAATGACGCGGCCGGGTCCTGGGCGATGA
AGACCTTGATTGAGCGCGCCGAACCGCTCGGGATCGCGATCGTCCCGCTCGATCCGCGGCTCGACGATTTAAACAGCGAT
CTCGTTCGGACGGGCCGGGAAGAAATGGCGGCTCGGCTTCGCGCCCTGATGCTGCCGCTCGATGCGGTGCGCTTCCTTGT
CCGAAAAACATAG

Upstream 100 bases:

>100_bases
CGCGCTGGCAGGGGCTGCCGGTGCCGAGCTGTCCGTGCGGATCGCCGATCGCCTTTTGATCGACATCTGCGCGGGCGCAA
GGCCTTGGAAGGAGCCCCGC

Downstream 100 bases:

>100_bases
CGGGATTTCGGACGGCGGTGGGCGCCGCTTCATCAAGCGTCCGACCGGGTTGCCTCTGGATCATTCCCGGCAGCCGTGCC
TCCGGCCTTCGCTGGGGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Conjugative Transfer Protein TraI; P-Loop ATPase And Inactivated Derivative; Genomic Island Protein; Helicase Domain Protein

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGRAGKWTDAASGEHGDLLDVIA
ASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKASTGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAI
RFHPRCHYRASSDDPPDVRPAWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG
EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERAEPLGIAIVPLDPRLDDLNSD
LVRTGREEMAARLRALMLPLDAVRFLVRKT

Sequences:

>Translated_350_residues
MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGRAGKWTDAASGEHGDLLDVIA
ASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKASTGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAI
RFHPRCHYRASSDDPPDVRPAWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG
EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERAEPLGIAIVPLDPRLDDLNSD
LVRTGREEMAARLRALMLPLDAVRFLVRKT
>Mature_350_residues
MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGRAGKWTDAASGEHGDLLDVIA
ASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKASTGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAI
RFHPRCHYRASSDDPPDVRPAWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG
EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERAEPLGIAIVPLDPRLDDLNSD
LVRTGREEMAARLRALMLPLDAVRFLVRKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37677; Mature: 37677

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGR
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC
AGKWTDAASGEHGDLLDVIAASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKAS
CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
TGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAIRFHPRCHYRASSDDPPDVRP
CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCC
AWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG
CHHHHHHHHCCCCHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCC
EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERA
CHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
EPLGIAIVPLDPRLDDLNSDLVRTGREEMAARLRALMLPLDAVRFLVRKT
CCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGR
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC
AGKWTDAASGEHGDLLDVIAASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKAS
CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
TGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAIRFHPRCHYRASSDDPPDVRP
CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCC
AWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG
CHHHHHHHHCCCCHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCC
EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERA
CHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
EPLGIAIVPLDPRLDDLNSDLVRTGREEMAARLRALMLPLDAVRFLVRKT
CCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA