| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is yhiN [H]
Identifier: 103487315
GI number: 103487315
Start: 1925390
End: 1926598
Strand: Direct
Name: yhiN [H]
Synonym: Sala_1831
Alternate gene names: 103487315
Gene position: 1925390-1926598 (Clockwise)
Preceding gene: 103487314
Following gene: 103487316
Centisome position: 57.56
GC content: 67.49
Gene sequence:
>1209_bases ATGGGCTGGCGATCGCAAAGCTGCACTGACGCCTGCGTGGCAGTATTCGATTATGACGCCATCGTGCTGGGTGCCGGCGC GGCCGGGCTGATGTGCGCCGCGGTCGCGGGGCAGCGGGGGCGGCGCGTCCTGCTGCTCGATCACGCCGACGAGGTGGGCA AGAAAATCCTGATTTCGGGCGGCGGTCGCTGCAATTTCACCAACATCTACACGCGCCCCGAAACCTATATTTCGGCGAAC CCGCATTTCGCGAAGTCGGCGCTCGCGCGCTACGCCCCCGCCGACTTCATCGCGCTCGTCGAGCGCCATGGCATCGCATA TCATGAAAAGACGCTCGGCCAGTTGTTCTGCGATGGATCGGCGAAGCAGGTCGTGGCGATGCTGCTCGACGAATGCGCAA GGGGCGGCGTCGACGTCCGCTGCGGGCAGCCGGTGCGTCAGGTTACCCACGCCGACGGTCGGTTCGCTGTCCGCTTCGGC GACCTGGACTTCGCCGCCCCCAATCTTGTCATTGCGACAGGCGGGCCTTCGATCCCGAAGATGGGCGCGTCCGGTTTCGC TTATGATCTCGCCCGCCAATTCGGCCTCAAGGTCGTCGAGCCGCGCCCTGCGCTCGTCCCGCTGACGCTTGGCGGCGACG ATGTGCTGTTCCGCGAGTTGTCGGGCGTTGCGACGCCGGTCGAGGCGCGCGCGGGCAAGGCGGCGTTTCGCGAAGCCGCG CTCTTCACGCACAAGGGGCTTTCCGGTCCGGCAATCCTTCAGGTCAGCAGCTATTGGCGCCACGGCGAACCGGTGACGAT CGACTTTTTGCCCGATGCCGCGCCGGGCTGGCTGCTCGGAGCGAAGCGCGCGCGCCCGCGCGCGACGCTCGCTTCGGCGC TCGCGCTCCCCGACCGCCTTGCGCAGACGCTCGCCGACCGCCTTGCGCTCCCCGGCGAACTCGGCGCCCAGACCGACCGC AAGCTCGCCGACGCCGAAGCGCGCCTCAAACGCTGGACTTTCCGCCCCAACGGCACCGAAGGCTTCGCAAAGGCCGAGGT CACCGCCGGCGGCATTTCGACCGCAAACCTGTCCTCGCAAACAATGATGGCCAAATGCGTGCCGGGACTGTATGCGGTCG GCGAAGCCGTGGACGTCACCGGGTGGCTGGGCGGCTATAATTTTCAATGGGCCTGGGCCAGCGGACACGCGGCGGGCCAG GCCCTTTAG
Upstream 100 bases:
>100_bases GACAAGCTGCACACGCTCGCGAAAAAGGGCATGGCGATGAAAGCGATCGCCAGGGCGCTGACGCGCAGCGAGGAATCGGT CAAGCAACGCGCCAAGGCCG
Downstream 100 bases:
>100_bases GAAAACCGACCTACTCATTCTCGTCATGCCGGACTTGATCCGGCATCCATACGCCGATGCTGCACCCCTGGCGGTGGACC CCGGATCAAGTCCGGGGTGA
Product: HI0933-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MGWRSQSCTDACVAVFDYDAIVLGAGAAGLMCAAVAGQRGRRVLLLDHADEVGKKILISGGGRCNFTNIYTRPETYISAN PHFAKSALARYAPADFIALVERHGIAYHEKTLGQLFCDGSAKQVVAMLLDECARGGVDVRCGQPVRQVTHADGRFAVRFG DLDFAAPNLVIATGGPSIPKMGASGFAYDLARQFGLKVVEPRPALVPLTLGGDDVLFRELSGVATPVEARAGKAAFREAA LFTHKGLSGPAILQVSSYWRHGEPVTIDFLPDAAPGWLLGAKRARPRATLASALALPDRLAQTLADRLALPGELGAQTDR KLADAEARLKRWTFRPNGTEGFAKAEVTAGGISTANLSSQTMMAKCVPGLYAVGEAVDVTGWLGGYNFQWAWASGHAAGQ AL
Sequences:
>Translated_402_residues MGWRSQSCTDACVAVFDYDAIVLGAGAAGLMCAAVAGQRGRRVLLLDHADEVGKKILISGGGRCNFTNIYTRPETYISAN PHFAKSALARYAPADFIALVERHGIAYHEKTLGQLFCDGSAKQVVAMLLDECARGGVDVRCGQPVRQVTHADGRFAVRFG DLDFAAPNLVIATGGPSIPKMGASGFAYDLARQFGLKVVEPRPALVPLTLGGDDVLFRELSGVATPVEARAGKAAFREAA LFTHKGLSGPAILQVSSYWRHGEPVTIDFLPDAAPGWLLGAKRARPRATLASALALPDRLAQTLADRLALPGELGAQTDR KLADAEARLKRWTFRPNGTEGFAKAEVTAGGISTANLSSQTMMAKCVPGLYAVGEAVDVTGWLGGYNFQWAWASGHAAGQ AL >Mature_401_residues GWRSQSCTDACVAVFDYDAIVLGAGAAGLMCAAVAGQRGRRVLLLDHADEVGKKILISGGGRCNFTNIYTRPETYISANP HFAKSALARYAPADFIALVERHGIAYHEKTLGQLFCDGSAKQVVAMLLDECARGGVDVRCGQPVRQVTHADGRFAVRFGD LDFAAPNLVIATGGPSIPKMGASGFAYDLARQFGLKVVEPRPALVPLTLGGDDVLFRELSGVATPVEARAGKAAFREAAL FTHKGLSGPAILQVSSYWRHGEPVTIDFLPDAAPGWLLGAKRARPRATLASALALPDRLAQTLADRLALPGELGAQTDRK LADAEARLKRWTFRPNGTEGFAKAEVTAGGISTANLSSQTMMAKCVPGLYAVGEAVDVTGWLGGYNFQWAWASGHAAGQA L
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=394, Percent_Identity=52.5380710659898, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 42508; Mature: 42377
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWRSQSCTDACVAVFDYDAIVLGAGAAGLMCAAVAGQRGRRVLLLDHADEVGKKILISG CCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCHHCCCEEEEEC GGRCNFTNIYTRPETYISANPHFAKSALARYAPADFIALVERHGIAYHEKTLGQLFCDGS CCEEEEEEEEECCCEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCC AKQVVAMLLDECARGGVDVRCGQPVRQVTHADGRFAVRFGDLDFAAPNLVIATGGPSIPK HHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCC MGASGFAYDLARQFGLKVVEPRPALVPLTLGGDDVLFRELSGVATPVEARAGKAAFREAA CCCCCHHHHHHHHHCCEEECCCCCEEEEEECCCHHHHHHHHCCCCCHHHHCCHHHHHHHH LFTHKGLSGPAILQVSSYWRHGEPVTIDFLPDAAPGWLLGAKRARPRATLASALALPDRL HHHCCCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHHHCHHHH AQTLADRLALPGELGAQTDRKLADAEARLKRWTFRPNGTEGFAKAEVTAGGISTANLSSQ HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCEECCCCHH TMMAKCVPGLYAVGEAVDVTGWLGGYNFQWAWASGHAAGQAL HHHHHHCCCHHHHCCCEEEEEECCCCCEEEEECCCCCCCCCC >Mature Secondary Structure GWRSQSCTDACVAVFDYDAIVLGAGAAGLMCAAVAGQRGRRVLLLDHADEVGKKILISG CCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCHHCCCEEEEEC GGRCNFTNIYTRPETYISANPHFAKSALARYAPADFIALVERHGIAYHEKTLGQLFCDGS CCEEEEEEEEECCCEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCC AKQVVAMLLDECARGGVDVRCGQPVRQVTHADGRFAVRFGDLDFAAPNLVIATGGPSIPK HHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCC MGASGFAYDLARQFGLKVVEPRPALVPLTLGGDDVLFRELSGVATPVEARAGKAAFREAA CCCCCHHHHHHHHHCCEEECCCCCEEEEEECCCHHHHHHHHCCCCCHHHHCCHHHHHHHH LFTHKGLSGPAILQVSSYWRHGEPVTIDFLPDAAPGWLLGAKRARPRATLASALALPDRL HHHCCCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHHHCHHHH AQTLADRLALPGELGAQTDRKLADAEARLKRWTFRPNGTEGFAKAEVTAGGISTANLSSQ HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCEECCCCHH TMMAKCVPGLYAVGEAVDVTGWLGGYNFQWAWASGHAAGQAL HHHHHHCCCHHHHCCCEEEEEECCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]