Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is engD [H]

Identifier: 103487106

GI number: 103487106

Start: 1701043

End: 1702140

Strand: Direct

Name: engD [H]

Synonym: Sala_1621

Alternate gene names: 103487106

Gene position: 1701043-1702140 (Clockwise)

Preceding gene: 103487104

Following gene: 103487107

Centisome position: 50.85

GC content: 64.48

Gene sequence:

>1098_bases
ATGGGTTTCAAATGCGGGATCGTCGGGCTGCCCAATGTCGGCAAGTCCACCCTGTTCAACGCGCTGACCGAAACCGCGGC
GGCGCAGGCGGCGAACTATCCCTTCTGCACGATCGAGCCGAATATCGGCAATGTCGCGGTGCCCGACGACCGGCTCGACA
AGCTGGCGGCAATCGCGAACAGCAAGAAGATCATCGCGACACAGCTCGCCTTCGTCGATATTGCGGGCCTCGTGCGCGGC
GCGTCGAAGGGCGAGGGGCTGGGCAACCAGTTCCTCGGCAATATCCGCGAGGTCGACGCGATCGTCCATGTGCTGCGCTG
TTTCGAGAATGACGACATCCAGCATGTCGAAAACAAGGTCGACCCCGTCGCCGATGCCGAGACGGTCGAGACCGAACTGC
TGCTCGCCGACCTCGAAAGTCTGGAAAAGCGCCTGCCCGCCTTTGTCAAAAAAGCGGCACAGGGGGACAAGGAAGCGAAG
ATCGCCACATCGGTGCTGGGTCAGGCCCTCGACCTGCTGCGCGAAGGCAAGCCCGCGCGGCTGGTCGAACCCGGCGACGA
CGAGGAAGCCCGTGTGCTGCGCACCGCGCAGCTTTTGACCTCCAAACCCGTGCTTTATGTCTGCAACGTCGACGAGGGCA
GCGCGGCGAACGGCAACGCCTTTTCGGAAAAGGTGTTCGCCAAGGCTGCGGCCGAGGGCGCGCAGGCAGTGGTCGTTTCG
GCGGCGATCGAGAGCGAACTGGTGACGATGGACATGGCCGACCGGCTGGAGTTCCTGGCCGAAATGGGCCTGAAGGAAAC
CGGCCTCGCGCGCGTCATCCGCGCCGGGTATGAGCTGCTCCACCTCATCACCTTCTTCACCGTCGGCCCGCGGGAAGCGC
GCGCATGGACCGTGCATCAGGGCGCGACCGCGCCCGAAGCCGCGGGCGAGATCCACAGCGATTTCCAGAAGGGCTTCATC
CGCGCCGAAACGATCGCCTATGACGATTATGTCGCGCTGGGCGGCGAAGCCCGCGCGCGCGAAGCGGGCAAGCTGCGCGC
CGAGGGCAAGGCCTATGTCGTGCACGACGGCGACGTGATGCATTTCCTGCATAGTTGA

Upstream 100 bases:

>100_bases
GCCAAGTCTGAACGCTGCGCAACCGCAAAGACTGGCGCGCCGCGCGACTTGGCGCTAGGGGCGCTGCGACGCCGGGGTCC
TCCGGCCGGATGGAGTTTTT

Downstream 100 bases:

>100_bases
TCGCGAGGCTGACCAAACTTCGTCATTGCGAGGAGCGTAGCGACGAAGCAATCTCCAGCGATGCACCCTGACGCTCAGCC
CGCAGTTTACATCATGACCA

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIANSKKIIATQLAFVDIAGLVRG
ASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKVDPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAK
IATSVLGQALDLLREGKPARLVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS
AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQGATAPEAAGEIHSDFQKGFI
RAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVMHFLHS

Sequences:

>Translated_365_residues
MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIANSKKIIATQLAFVDIAGLVRG
ASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKVDPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAK
IATSVLGQALDLLREGKPARLVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS
AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQGATAPEAAGEIHSDFQKGFI
RAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVMHFLHS
>Mature_364_residues
GFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIANSKKIIATQLAFVDIAGLVRGA
SKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKVDPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAKI
ATSVLGQALDLLREGKPARLVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVSA
AIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQGATAPEAAGEIHSDFQKGFIR
AETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVMHFLHS

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=365, Percent_Identity=42.1917808219178, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI58761502, Length=212, Percent_Identity=36.3207547169811, Blast_Score=148, Evalue=7e-36,
Organism=Escherichia coli, GI1787454, Length=365, Percent_Identity=55.8904109589041, Blast_Score=402, Evalue=1e-113,
Organism=Escherichia coli, GI1789574, Length=128, Percent_Identity=33.59375, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=42.4657534246575, Blast_Score=280, Evalue=6e-76,
Organism=Saccharomyces cerevisiae, GI6319499, Length=373, Percent_Identity=38.0697050938338, Blast_Score=239, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6321773, Length=377, Percent_Identity=37.4005305039788, Blast_Score=232, Evalue=6e-62,
Organism=Saccharomyces cerevisiae, GI6321649, Length=336, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24640873, Length=365, Percent_Identity=42.4657534246575, Blast_Score=281, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24640877, Length=365, Percent_Identity=42.4657534246575, Blast_Score=281, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24640875, Length=365, Percent_Identity=42.4657534246575, Blast_Score=281, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24640879, Length=322, Percent_Identity=40.0621118012422, Blast_Score=226, Evalue=2e-59,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39054; Mature: 38923

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIAN
CCEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHHHHHHHHHHC
SKKIIATQLAFVDIAGLVRGASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
DPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAKIATSVLGQALDLLREGKPAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
LVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS
CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEH
AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
GATAPEAAGEIHSDFQKGFIRAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVM
CCCCCHHHHHHHHHHHHCCEEHEEEEECCCEEECCCHHHHHHCCCCCCCCEEEEECCCHH
HFLHS
HHHCC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIAN
CEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHHHHHHHHHHC
SKKIIATQLAFVDIAGLVRGASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
DPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAKIATSVLGQALDLLREGKPAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
LVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS
CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEH
AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
GATAPEAAGEIHSDFQKGFIRAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVM
CCCCCHHHHHHHHHHHHCCEEHEEEEECCCEEECCCHHHHHHCCCCCCCCEEEEECCCHH
HFLHS
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA