Definition Novosphingobium sp. PP1Y, complete genome.
Accession NC_015580
Length 3,911,486
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 44 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(347367..348647)  PHAGE_Pseudo_vB_PaeS_PMG1: integrase; PP1Y_AT3358; phage(gi374531680)  2e-08  Click
2 complement(348777..349100)  hypothetical protein; PP1Y_AT3375  N/A  Click
3 349987..350006  attL    AAGTGGATGCCCCGCGAGGA  N/A  Click
4 complement(350092..350301)  PHAGE_Entero_P4: transcriptional regulator; PP1Y_AT3390; phage(gi9627517)  3e-06  Click
5 350415..350798  hypothetical protein; PP1Y_AT3396  N/A  Click
6 complement(350890..351153)  PHAGE_Azospi_Cd: hypothetical protein APCd_gp10; PP1Y_AT3403; phage(gi168495113)  2e-19  Click
7 351703..352029  hypothetical protein; PP1Y_AT3411  N/A  Click
8 complement(352032..352565)  hypothetical protein; PP1Y_AT3418  N/A  Click
9 352686..352862  hypothetical protein; PP1Y_AT3425  N/A  Click
10 352900..353442  hypothetical protein; PP1Y_AT3428  N/A  Click
11 complement(353898..354326)  hypothetical protein; PP1Y_AT3443  N/A  Click
12 complement(354533..354991)  30S ribosomal protein S12; PP1Y_AT3452  N/A  Click
13 complement(356275..356433)  hypothetical protein; PP1Y_AT3466  N/A  Click
14 complement(356438..357460)  PHAGE_Burkho_KS14: gp10; PP1Y_AT3470; phage(gi327198279)  6e-77  Click
15 complement(357457..357861)  PHAGE_Burkho_KS14: gp11; PP1Y_AT3480; phage(gi327198280)  8e-28  Click
16 complement(357884..360397)  PHAGE_Burkho_KS14: gp12; PP1Y_AT3486; phage(gi327198281)  1e-78  Click
17 complement(360537..360842)  PHAGE_Burkho_KS14: gp13; PP1Y_AT3509; phage(gi327198282)  4e-19  Click
18 complement(360905..361417)  PHAGE_Burkho_KS14: gp15; PP1Y_AT3512; phage(gi327198284)  2e-39  Click
19 complement(361461..362633)  PHAGE_Burkho_KS14: gp16; PP1Y_AT3515; phage(gi327198285)  5e-121  Click
20 complement(362650..363000)  PHAGE_Pseudo_phiCTX: predicted baseplate; PP1Y_AT3525; phage(gi17313236)  4e-23  Click
21 complement(363000..363536)  PHAGE_Pseudo_phiCTX: predicted baseplate; PP1Y_AT3530; phage(gi17313235)  2e-38  Click
22 complement(363619..364824)  hypothetical protein; PP1Y_AT3534  N/A  Click
23 364490..364828  hypothetical protein; PP1Y_AT3542  N/A  Click
24 complement(364929..365735)  PHAGE_Pseudo_B3: Dam modification methylase; PP1Y_AT3545; phage(gi56692617)  7e-49  Click
25 complement(366183..366566)  PHAGE_Synech_S_CBS4: tail fiber protein; PP1Y_AT3558; phage(gi374531791)  6e-12  Click
26 complement(366575..369103)  PHAGE_Burkho_KS5: gp23; PP1Y_AT3562; phage(gi327198021)  8e-40  Click
27 complement(369116..369670)  PHAGE_Burkho_KS14: gp19; PP1Y_AT3591; phage(gi327198288)  4e-44  Click
28 complement(369667..370560)  PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; PP1Y_AT3596; phage(gi28198989)  2e-75  Click
29 complement(370885..373245)  hypothetical protein; PP1Y_AT3606  N/A  Click
30 complement(373534..374205)  PHAGE_Burkho_KS14: gp23; PP1Y_AT3634; phage(gi327198292)  4e-14  Click
31 complement(374202..374720)  PHAGE_Pseudo_phiCTX: predicted tail completion; PP1Y_AT3642; phage(gi17313232)  8e-23  Click
32 complement(374846..375241)  hypothetical protein; PP1Y_AT3649  N/A  Click
33 complement(375695..376027)  hypothetical protein; PP1Y_AT3657  N/A  Click
34 complement(376032..376256)  PHAGE_Burkho_phiE202: gp46, phage Tail Protein X; PP1Y_AT3661; phage(gi134288782)  2e-08  Click
35 complement(376256..376738)  PHAGE_Burkho_KS14: gp31; PP1Y_AT3663; phage(gi327198300)  1e-30  Click
36 complement(376859..377653)  PHAGE_Ralsto_phiRSA1: terminase; PP1Y_AT3668; phage(gi145708083)  9e-35  Click
37 complement(377708..378799)  PHAGE_Burkho_KS14: gp33; PP1Y_AT3678; phage(gi327198302)  3e-82  Click
38 complement(378851..379660)  PHAGE_Burkho_KS14: gp34; PP1Y_AT3685; phage(gi327198303)  2e-47  Click
39 379836..381689  PHAGE_Burkho_KS14: gp35; PP1Y_AT3692; phage(gi327198304)  2e-177  Click
40 381710..382738  PHAGE_Burkho_phi52237: pbsx family phage portal protein; PP1Y_AT3701; phage(gi72537722)  8e-104  Click
41 complement(382916..383695)  endonuclease; PP1Y_AT3714  N/A  Click
42 complement(383688..385025)  PHAGE_Natria_PhiCh1: M.PhiCh1-II; PP1Y_AT3725; phage(gi22091184)  2e-30  Click
43 complement(385072..385509)  PHAGE_Burkho_AH2: Vsr endonuclease; PP1Y_AT3742; phage(gi399529071)  9e-34  Click
44 complement(385936..386547)  replication protein A; PP1Y_AT3758  N/A  Click
45 complement(386687..388060)  PHAGE_Stenot_S1: putative integrase; PP1Y_AT3766; phage(gi213163927)  3e-63  Click
46 388183..388202  attR    AAGTGGATGCCCCGCGAGGA  N/A  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3730993..3732318  PHAGE_Strept_6: terminase large subunit; PP1Y_AT35532; phage(gi93007440)  3e-54  Click
2 3732343..3733503  PHAGE_Strept_6: portal protein; PP1Y_AT35547; phage(gi93007441)  2e-17  Click
3 3733503..3733811  hypothetical protein; PP1Y_AT35558  N/A  Click
4 3733808..3734206  PHAGE_Marino_P12026: phage prohead protease; PP1Y_AT35556; phage(gi399528321)  1e-14  Click
5 3734264..3735400  PHAGE_Salmon_ST64B: Major capsid protein precursor; PP1Y_AT35562; phage(gi23505451)  3e-84  Click
6 3735461..3736009  PHAGE_Rhizob_3: p008; PP1Y_AT35568; phage(gi195546539)  7e-05  Click
7 3736192..3736581  hypothetical protein; PP1Y_AT35572  N/A  Click
8 3736617..3737024  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; PP1Y_AT35574; phage(gi461474972)  4e-12  Click
9 3737021..3737353  hypothetical protein; PP1Y_AT35580  N/A  Click
10 3737537..3738112  PHAGE_Cyanop_MED4_184: tail tape measure protein; PP1Y_AT35588; phage(gi472340568)  4e-06  Click
11 3738179..3740509  PHAGE_Escher_phAPEC8: hypothetical protein; PP1Y_AT35594; phage(gi448260438)  3e-46  Click
12 3740506..3741330  PHAGE_Tetras_SI1: hypothetical protein; PP1Y_AT35611; phage(gi472342235)  6e-29  Click
13 3741744..3743939  PHAGE_Tetras_SI1: hypothetical protein; PP1Y_AT35629; phage(gi472342233)  2e-54  Click
14 3743963..3744421  PHAGE_Tetras_SI1: hypothetical protein; PP1Y_AT35644; phage(gi472342232)  9e-06  Click
15 3744614..3745669  PHAGE_Human__4: EBNA-2; PP1Y_AT35659; phage(gi82503202)  4e-10  Click
16 complement(3745832..3746527)  PHAGE_Mycoba_Qyrzula: gp3; PP1Y_AT35671; phage(gi109521761)  4e-25  Click
17 complement(3746566..3746967)  hypothetical protein; PP1Y_AT35680  N/A  Click
18 complement(3747083..3747973)  molecular chaperone Hsp33; PP1Y_AT35687  N/A  Click
19 complement(3747991..3748917)  PHAGE_Parame_NY2A: hypothetical protein NY2A_B222R; PP1Y_AT35693; phage(gi157952526)  2e-16  Click
20 complement(3748917..3750107)  PHAGE_Mycoba_Myrna: gp183; PP1Y_AT35701; phage(gi203454746)  2e-13  Click