gi|334139601|ref|NC_015580.1| Novosphingobium sp. PP1Y, complete genome. [asmbl_id: NC_015580].3911486, gc%: 63.71% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### complement(347367..348647) PHAGE_Pseudo_vB_PaeS_PMG1: integrase; PP1Y_AT3358; phage(gi374531680) 2e-08 MPTAKLNKRNVDAFAPPKDKQAVLWDSEIRGFGLRALPSGLKTFIVQYRNIEGIKRRINLGRYGVITTEQARDLAKIKLGEVAGGQDPAEAIHQARSGMTVAEICDWYLVEARAGNILGRKNRPIKASSLAMDESRINTHIKPILGHRMAKRLTIADVEQMQADVRDGKTAKARGNGRGGRPAGGPGVASRCLGSLQAILGHAKHKGLIAEHPTRGAKKLAINKKTRRLSTAELVAFGKAIAYAERNGENPTALAVVRTLALTGYRREEAQSMKRAWVHAEGGFVSFPDTKTDAQIRSIGPEALKVVLAQPEIVGNPYVFPSVTGAGAYQAAPACFRRVCQWAGIEGATLHTLRHTFGSIAGELGFTELTIRAMLGHASQNVTQDYIHIDEALKLAVRKTSDEIARLLAEGAEALRPVRSHAAVEN complement(348777..349100) hypothetical protein; PP1Y_AT3375 N/A MQQSPTRLRHVTAAEALTPESDASKHLQNRGNLSRSSTTGDARARLNSGAVVDPVSKETAVSSPLIDQISNFHRGTGAGEGIRTLDPNLGKIFRPLFLNFPKYDYLR 349987..350006 attL N/A AAGTGGATGCCCCGCGAGGA complement(350092..350301) PHAGE_Entero_P4: transcriptional regulator; PP1Y_AT3390; phage(gi9627517) 3e-06 MSEAAPARSNRFLKITDVVAETSLSRATIYRLIAKGDFPSPIRVSPQRVAWSERSVQGWKDQQANNLLN 350415..350798 hypothetical protein; PP1Y_AT3396 N/A MVIGANVAASGEFRSRPLYLDGRLTDIFQFLLPAARTDFPLGFGAVADVGDDVLVGGRADQLVYEQGLGAEDEAFFVQLAGPVRSQFEHHGAHWRSPLAFDRASATMNGIARTAAIRNRARVIALIA complement(350890..351153) PHAGE_Azospi_Cd: hypothetical protein APCd_gp10; PP1Y_AT3403; phage(gi168495113) 2e-19 MTIPVEIQESRRPVDDRLRLLVERVERLEEEKKGISEDIRDVYNEAKAVGYDVKMMRQIVRLRKMKPDDRREMDMILDTYRAALGID 351703..352029 hypothetical protein; PP1Y_AT3411 N/A MDQVAIRLSAVHRSGVGFGGRPIVIGGAVIRCGVPLALGQDGDGPGEATWPGGADRFHADHELMPAGIGVAAMIVDLPVKRRVLAHGAGEGLATAGRAGDVWKLRRAT complement(352032..352565) hypothetical protein; PP1Y_AT3418 N/A MRSAGWIATKGTGSMTKIRDPLTFSLAIKIVAEGIGWNLVADATHRAERTVRLWSESDKNGTPTLDQAIALDRAFLAAGGGYAPILESYVRQLDVSLLELIACRAALADDVANVSREIGEAISFCIMAAQPGASPAVIQRAIVETEEADALLPRLLGRLKSFMPGNGAARETMGNHR 352686..352862 hypothetical protein; PP1Y_AT3425 N/A MGCLWAGMRPPRFQENTVEEGSPIARAIDLIPPKVSKMLFDETMSILCDILGQKAISK 352900..353442 hypothetical protein; PP1Y_AT3428 N/A MEKVANRLRDLRQKAVPRLTVRAMAAALDMPLGTYSNYESTRYKKPSLPLDLTRMIASVLANHGVDPAEVMKLAGLSEDEAEPEAREIEAHKPRQLCVTLPVILPSEAALRDMFRSLLVMVPDGATKDEVAEILARRLPSGLAAIGPVLLDPVAAVSIAGEADPQVPAKAHPEAEQRSRT complement(353898..354326) hypothetical protein; PP1Y_AT3443 N/A MAISRTTPMKRHTLTTMTAGIILCLSGCAATQTSEMNTGERISQRGGQISHYGESWSAGQKDAKLGQRMVDKSNRSSDSARKQLADARADVLKAEARIQAASDAKIEGEQLILDGTMKMNQAEADYARVRAGPSAKSGNPKF complement(354533..354991) 30S ribosomal protein S12; PP1Y_AT3452 N/A MDNGQTCIAKERCLAMDLNFLLHIHQIHVIKANATSDEKSRQIHLDKAALHAEEIGSLRVPPLQAVTLLSSVSADTLSYGTYAWDRPVKPTFSLDSWENEGGAVRQPDVPDALETKLTLTPQYFVGSAVFSDLAQAVAEHARQKSDKLQGDN complement(356275..356433) hypothetical protein; PP1Y_AT3466 N/A MEISLIEAAWRKLEQGVSSMVQSCWPDNLTPGTSLFALFLVDFCNSTDICVK complement(356438..357460) PHAGE_Burkho_KS14: gp10; PP1Y_AT3470; phage(gi327198279) 6e-77 MTQAITNIPDWRVTLDGKDLTERMRPRLVSLTISEKRGDEADQLDIVLDDTDGGLAIPKEGALLTVALGWKQGRDVTPGLIDKGSYKVDDVTHSGPPDQIRIRARAADFTSQIRNRREQSWKNTTLGAVLQDIAGRNGLTLKVAADMAATALSSISQSRESDVAFLRRLGREYDAVATIKDRHLIFARKGAGTTASGKALPTLTLTRRSGDGHNWQRQKRDGQEGVTASWHDRKDAKRKTITVGKADGAKKLRKVYPDEASAKRAAIAERDRLKRAPATLDLKLALGRPDAYPECRVTASGFKDEIDATTWLISEVTHRLDNGGGYASDLKLETAPRFSA complement(357457..357861) PHAGE_Burkho_KS14: gp11; PP1Y_AT3480; phage(gi327198280) 8e-28 MALGMFLFQIPTLAYDDLQRKTDWRFARSARVGARDAVQFIGPGDEKVSMSGAVYAEIADGRVSIDQLREMADAGEALPLVDGSGTVFGNFVIEAIDERHVAMMADGRPLRIDFGIDLLRVDDPAPTNNAETAA complement(357884..360397) PHAGE_Burkho_KS14: gp12; PP1Y_AT3486; phage(gi327198281) 1e-78 MADRNLRLQIILEGLDRVTAPLKSITGASSAARRDLAETHKQLKGLDALQQQVGRYKATETRYANDARQYKELQAKLAALGQQLEETEEPTKKLRNEFEKVERQTAQVARKLESGGAELQQLSSKLSDAGIDVADLARHEDRLAERTQDATEALRRQTAQLEKVDRARRNSEKLSDIGSRATGMGVGMIAAGTAAGAPIAMATKQAMTLESAMADVRKVVDFPTPRAFARMSDDILEMSTRIPMSAEGIAQIVAAAGRANVPRQELLRFAEDAAKMGVAFDSTAEEAGSTMAKWRTAFELPQQGVVALADQINALTNSYGGNVGAVTDMVTRIGPLGKVGGLAASQIAAMSQVLSSVGVESEVGATGIKNMMLALTKGEAATRSQSKAFQALGLDAVQVAKDMQRDAGGTIIDVMKRLQQLPKEAQAGALTQLFGSESVSAIAPMLTSLDQLQKNFALVGDKSQYAGSMNREYLNAVATTAGSTQLAGNAIDALSTKMGDQMLPTVSEVSEKVKETANGMRDWAEENPNLAKGIMIFMAVGSGLLILLGGLALAFAALTFAAAPLGIALGPLLLIVAAVAAVAAAAYLIYSNWGAISAWFSDLWATIKSAAGTAIDWLVDAFMNFSPIGLLMKAFDAVLTYLQGLDLKEIGRNLIQGLVNGITGMLGTLKTTVMNAAGSVARWFKEKLGIHSPSRVFAGLGGFVMAGLDQGLADNSAGPLRRISALSDAMAAGITANPIAPLVRSAQPEGGGILSRIADSSGRMAGALVAGAAAPAVAMASPATAPADTRAAPSVPGATYNITVHAGAAPAQDIAEEVRKAIEQIERERRGRGFGDE complement(360537..360842) PHAGE_Burkho_KS14: gp13; PP1Y_AT3509; phage(gi327198282) 4e-19 MTEAIAEIRTVALDAPIQRGEQTIESIQIRKPKSGELRGLALVELGQLKVDALTKLLPRVTMPMLTPAEVSNMDPADLLACGAEIGSFLLQRAQRTDALDR complement(360905..361417) PHAGE_Burkho_KS14: gp15; PP1Y_AT3512; phage(gi327198284) 2e-39 MGLPRTLKNLMLFNEGQSYVCDVKTVTLPTLTRKMEEYRGGGMSAPVKLDMGMEAMELKSVFAGPERDMLRQWGLTKVNGVYMRFAGFYQQDDTAETDTIEVIVRGRHSEIEMGDQEVGTPADFTVTSALAYYKLIWNGRTEIEIDPLNMVEIVDGSDRLAEQRSALGLF complement(361461..362633) PHAGE_Burkho_KS14: gp16; PP1Y_AT3515; phage(gi327198285) 5e-121 MAFKHGITVTEISTGARTLAAVSTAIIGLVATASDADAAVFPLDMPVLVTDVEAAIGDAGTDGTLAASLRAIADQSRPIVVVVRVAEGADEAETASNVIGTTTAEGMKTGMQALLAAQGQLGVKPKILGTPGLEAQAVTAALAVVAKKLRGFAYARAVGDTVADAVLYRANFSERELMLLMPDFLAWDTATSANVTSFAAARAMGLRARIDELYGPQKTLSNVAVSGVVGLTKDIHWDIEDMASDAGVLNASEVTALVRSDSGFRFWGNRTCSDDPLFQFESTTRVAQLLADTVARGMDWAMDKPLTPALARDIIETVNGFFLELKAAGVILGANAWFDEANNSTASLQAGKLRIDYDYTVPPPLEDLGFNQRITDSYFADFASQLTQAA complement(362650..363000) PHAGE_Pseudo_phiCTX: predicted baseplate; PP1Y_AT3525; phage(gi17313236) 4e-23 MTGMARDTGKALDGLDHIRQSAADILSTPMGTRVGRREYGSLLPELIDQPMTAANILRVYAATAVALTRWENRIRLRRVGVAAGDRPGAATVIIDATRTDTAPANALVRLSVPLAA complement(363000..363536) PHAGE_Pseudo_phiCTX: predicted baseplate; PP1Y_AT3530; phage(gi17313235) 2e-38 MAQPLDPEQLTGDVLRLGVIASVDHAQATCTVESGDVVTGDLPWIAPRAGGLRVWSPPTVGEQCLLLSPEGDIENGVVIVGLYCDAFPAPSANPDLVHLEFDDGAVIAYDLAGHALTVTLPAGGTATVDAPGGLTLNCDVTVNGTLSASTDVVGAGISLKGHKHGGVQAGGAQTGAPV complement(363619..364824) hypothetical protein; PP1Y_AT3534 N/A MSISSLAALLKAAATASPKPSVRDLSLAAWADIDPKLVSSVSDALNETEELKELWGKWAQFSDFGSLVQLQQAAYSLINRARDGYDSEAIVSDLFEIAKTSEVSFASVRAVTNLVVEERVSLAEGVYLAPPKELPNSNAKYAAFESGMQGDGGAAISSGKSALVVEITCKPFRSPPNSSGPSSEFSPELTQELEQKFERARAALILVGNAAPEFGVSYGYVANVGWPGMRSPGFGAAFRVPRQPDRISLTHEPSLKSIFEQVRTTDPIISLAIDRLKASRKRDTDLEKAIDHGLCLEVLLMRGAKTETTEITNKISHRCAWLLGRNAERRHEILKIVKMAYNLRSKAAHAGALPAIRDSDQADTRKRHFEDCERLIVNLIVRLMKGWPDWDELTLGFETRA 364490..364828 hypothetical protein; PP1Y_AT3542 N/A MTARTEAKETSLVFAISKRSLTIASESYPSRARFMREYAACWSCTSDPKSENCAHFPQSSFNSSVSFSASLTEETNFGSMSAQAASDKSRTDGLGEAVAAALSSAAKLDIDI complement(364929..365735) PHAGE_Pseudo_B3: Dam modification methylase; PP1Y_AT3545; phage(gi56692617) 7e-49 MSTPFVLVRPVSPAAGYIGGKRNLSKRICAIIERTPHTSYAEPFVGMGGIFLRRSRRPRAEAINDISGDVVTLFRCLAEHYPYLIDMLRFRVASRAEFERLLAQAPDTLTDLQRAVRFLYVQRLAFGGKVSGRNFGVDASAPARFDVGKLEPMLADLHDRLQSVTIERLPYGDFIRRYDRDGALFYLDPPYWACERDYGADVFTRDDFAALADQLAGIKGKFLMSLNDNAGVRETFAAFTITSIDTTYSVGAKSRQAREVLVRNFSSA complement(366183..366566) PHAGE_Synech_S_CBS4: tail fiber protein; PP1Y_AT3558; phage(gi374531791) 6e-12 MARYFSSQSCGFYDSDLHLVVPADAVEITPERHAELLQAQAEGMVIKADEAGEPVAVIPAPPSEAEQWSALRKRRGYLLSASDWTQMPDSPLTYELRADWVAYRQALRDLPETVTDPAAVEWPVAPA complement(366575..369103) PHAGE_Burkho_KS5: gp23; PP1Y_AT3562; phage(gi327198021) 8e-40 MGLTLTVTNAGRAALVDASNTGTAPVTIAEVGLTGTAVTPDPGATALPGEFKRIATLSGDVVADDTIHLIVRDETGDVFTVRSLALYLGDGTLFAIYGQADVLVEKSAQALMLLAIDVQFADVDATDLTFGDANFLNPPATTEQMGVVELSTLAEAIGGTSASRVPAEKMVKDAVNAWLDARFGANNAGIWHPGNDGAGSGLDADLLDGQQGSWYSNIPARLGYNPVQQGTGNGQLAGNVIKIGWSSASRLKATVDVTDQGNLVTDPYLAAGALTVNGAAMRRGGYDVWGPDNDGAGSGLDADLLDGQHGSAFARLNLPQSQAFSGNLLVGMGQASGFEGGQIDFAKAPSGAMTGDPSIDIYNNGFRMIGPFSGGTRTLEFDFGASGGKVWHAGNDGAGSGLDADLLDGQHGSYYADIPARLGYTPFNRAGDTVTGTLAVSGSGKILFSSVHTSEKHIEFERSGQTAYMYGSASGLGVYDTQYGEVWRWGYGSTFTIQGALAWTAGNDGAGSGLDADLLDGQQGAYYADIPARLGYTPVSKSGDSFTNVLSFTSGDSQGIASRPSDSTPLEVRGNGTGAAVMTFHRPGSFAAFLGLDTDNSLRFGGWSAGAVSHLLWHSGNDGSGSGLDADLLDGQQGSYYADIPARLGYTPVQQGGGIGQGTNKIYIGWSGARLKATVDSTDQGALVTEPNLNGNVLNIKGASMWRGAYNLWGPDNDGAGSGLDADLLDGQHASAFAKMADFAGDLSAGGYQKLPGGLVLQWVRGASGASEGSQALNWPLTFTAVIDAFVSTSVSYASSSADVWFQLVGSPSNNGCTVMRGYSGNTGEVAAAPVVFALGRI complement(369116..369670) PHAGE_Burkho_KS14: gp19; PP1Y_AT3591; phage(gi327198288) 4e-44 MTYPTLLPPGSTALEKALEQVAAGLLEIPTPVRSVWSPDDCPIELLPWLAWGLSLDNWSTSWPEGIKRERVRQAISIARRKGTAESVRAVIASFGGSVAIREWWQSEPKGAPHTFDLVLNLDQAGAPASAAFVDQVIAEVSRAKPVRSTFTFTQGINTQAGVGLVAAVRPTIFARLSCTAPAAT complement(369667..370560) PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; PP1Y_AT3596; phage(gi28198989) 2e-75 MADATFTAVDLSRLPAPDIVEELDFETILADAVARMQAQMPEFITRDSDPATKLLQVFAYFAQLLRQRVNDAVRAVMPAYAVGADLDNIAALFGITRFTLASADEALGIPAVMESDADFRRRMVLAPEGYSVAGPEGAYIFHALSADADVLDASATSPAAGEVLVSVLSRTGSGAASAALVSKVAAYVSDETRRPLTDFVTVQSAEIVTYAVEATLTTFSGPDGGVVLAAAHANLDAYIASSHRLGRDITRSAIFAALHVEGVQNVELSAPAADIIVSRTQAPHCTGTTINYAGTGE complement(370885..373245) hypothetical protein; PP1Y_AT3606 N/A MLKVTETGLLKADLARGVNLFTGAGFSTLARNGGGDTLPVGDGLKTLLIKEFGLDAYASLDLAGLYAVLLSDRRVALREFLEKLFTVGTYDDRYDALRRLNPEFLYTTNIDDLPFHIFNARQGEHTRVLHDVTPLGAPRQPGEVVQFVALHGNVRHSDADFLFTPGQISSAFASDRETWYVFQRELQARPTLFLGYGMHDAGVLQGLHDSSSRSQFNRWILLRREDEGATALYTALGFHILFGEIEDFLRYVVDEVGTDAVTQATPSHRAFTGQVPAPGEVAQRPIRNFFLGSEPEWSDAYSNQLVRRRVNAAVKNSIYNGRHVALVGLPLSGKTTVLMQVASEIAPERPVLYFDRITAPQADQIVAEHSGKPDKALVFVDNLIDSRDPIDRLVRDIGAQIVSAEQSIYFDSVGLRSMQGRLDVHSSSEIIPQDLQGIIDSIPVDIRRWHPDNLETVERDSGEVGLFESFRRHVFDENLTSRFRAKLSEFEKRDPVAFDVYMMACYVAACRTVVSFDMIYAFLSGPQKQYTDVYDIAKRIDSFLVEVDLEDDPHQDYFSVRSGALARIALRECQPRAFNRIFSRFHSAVPTRLIVDYPVFRRYAYDNDFARRAYPRVADGQRFYERLVASTENAYDYQHGAIYLSKMKSFTEAFSWIDTALSRSRGRVFSIRNTHARILFEANIDVLRRNLADRTALDGVEESMEVLEQCIKNDARRSYHLLRYSDQALQYAQIADDEKAVAWLQHAFKNLDLIVEQAKVSRSRESYNLRKYRNLMSEVRAALAGR complement(373534..374205) PHAGE_Burkho_KS14: gp23; PP1Y_AT3634; phage(gi327198292) 4e-14 MTDDLAEVERIAGALLRSLSSGKRRAIMRKMARELAISQRQRITAQHQPDGSAFEPRKAKQPPVSGRGTACFLYPAHGGGPPRRVIMKSFTWGTGRSMTGFDIGAGGIRTFEFDKVVKWLPVPEEYRNRGAGKLRRRGGLRRRAMFRRLASSRFLKTQTDDQGFWVGFTGKVSQIASVHQQGLRDRPSLRAKAVPYPRRELLGATPADRERMLDALYLYIAGT complement(374202..374720) PHAGE_Pseudo_phiCTX: predicted tail completion; PP1Y_AT3642; phage(gi17313232) 8e-23 MRKADSLRRWLTAFLPDLKTHPDLLQVYLEGGQVGARRSATLSFAYAYTVKALITDFAGDTDTIMVAVLAWIEKEQPQLLQASDNKPFRFEAELLDSETYDIELSIDLTEPVLVIPRVDGSGYDVTHPEEPAFPPMFDGVTASFLQGFGNVQLLAETTDPDAVLTPAIPPDA complement(374846..375241) hypothetical protein; PP1Y_AT3649 N/A MIGASHLALAGALATCLSGIGGFAYGTHIGVTQERAAQKRADDAADAVRRKLQGQIDASAERAQAAEYARQSSVREIYHESQKVIERPVYRNLCIDADGVRLLDRSAAIANAEGVAQPSGTATAPAEGAAQ complement(375695..376027) hypothetical protein; PP1Y_AT3657 N/A MDLRTFLPSIADAIGSLTPSLIGSAVAQAWKPGLSWRQRFVQWIVGSTVSFYATRAIIELTGWNDFVAQSIAFGIALLAFDATPRLAKAATDALASVPGRLADRFLPKKD complement(376032..376256) PHAGE_Burkho_phiE202: gp46, phage Tail Protein X; PP1Y_AT3661; phage(gi134288782) 2e-08 MAAEQRLVARAGDKLDLLLFREAGLGPSDLTRILDANPGLADLGPILPLGTIVIVPATAEISAPRVRPLIQLWD complement(376256..376738) PHAGE_Burkho_KS14: gp31; PP1Y_AT3663; phage(gi327198300) 1e-30 MTFVARPPEAEIDQAPPAESAVINDGFFPDIEPARVREAARIPTSITPARLRAAILGAIMSVEIDLRTWAKDRMAEGCATLAAVPAPQLDGQSVQSIRYNRAIALFTKAELIERHRDFDTTAAGSNQADELEVSIGELRRDAMHAIRDILGTTRTTVDLI complement(376859..377653) PHAGE_Ralsto_phiRSA1: terminase; PP1Y_AT3668; phage(gi145708083) 9e-35 MSLARRHRDRILASQTVASAPDGGAAAAPAAAPLPAAGAANAAPADRAAAQIALRLTHDLRRLKEIKSIDLKIAAKREMLPHYRDWLVGLHKADAGVGSGIAAEVLPTCMVWMIDVGEYSDALDLAEFMMRHRVEMPARYQRDTATVILEEIAEAALKTQAAGEEFPLAILDGADHLTHGEDMHDQARAKLLKAIGVEQLRRAEESEASTSAPRLNAALDALREAQRLHDRIGVKDRIRRAEKLLVAVTPEPEETNEQGGQNAA complement(377708..378799) PHAGE_Burkho_KS14: gp33; PP1Y_AT3678; phage(gi327198302) 3e-82 MRKETRQLFKSYVSQIALLNGIDVEDAVTKFSVSPAVEQTLEEKIQESSDFLSEINIVGVPQQTGQKVGVTVTRPMASRTDTAGGNRRTPTDPTDTGDNGSYFCRQTNYDHAIKYAKLDAWRHKPQFQTLLRDVILKQQGRDRIMIGFNGTSAAASTDVVANPLLQDVNEGWLHKIRTHAGSRVLNDGDLSVDPTKAIYVAAGVEVVDGDATNTASAEADYANLDALAFDALDLLDPWHRSDTDLVVIVGWKLVKDKYLNLLQAAGETATEREAAHRILTLPKQLAGKRAVIVPFFPETSMLITSLDNLSIYWQEETRRRQIRDEPALDQIENYESVNEDYVVEDYGRTALVENVVMGKKPAA complement(378851..379660) PHAGE_Burkho_KS14: gp34; PP1Y_AT3685; phage(gi327198303) 2e-47 MAKSKFFRVAVEGATVDGRVIQREWLEQMAASYDPATYTARINCEHVAGYSPDRPFNAYGSVLSLKTEEVELSFNGEKKSLLALYAEIDANDQLVEINKAGQKLFTSCEIHPDFAGEGKAYLVGLAVTDQPASLGTEPLKFAALSRPNLFTTAHETALELAAQPLSGEQIGESIGRSLLAFFRKDRKEEEPATPPPAPAPANDNAFDVDRFASVMGLQIAAAVKPANDAVAALGARFDALESKLKATEQPGSFTRAPATGGTGSIKTDC 379836..381689 PHAGE_Burkho_KS14: gp35; PP1Y_AT3692; phage(gi327198304) 2e-177 MPIQTPSQPGAPSAAWQFDPRRHARSLYWRGWGVTQIAQEFELFGVVSEKGTPIPRATIEAWKQRDRWDDAPSIRKIEDGLEIRLLTLIAKEKKTSADLVEMDALSRQIESLARVRRYEEPGGHSGDLNPKVGNRNAGPRRKARKNHFTAEQASELKRIFLDGLYDYQLTWWNALSQRTRMILKSRQIGATYYFAFEALIDAIETGRNQIFLSASKAQAHQFRSYIVSFAKLVGVSLTGDPMLITSDLRPEEEAAAELHFLGTNFRTAQGRHGNFYFDEFFWVHSFEELNKVASGMATHKKWRKTYFSTPSSVAHPAYPYWTGERRNRRRKKEDRVSIDVSHKALANGSTGPDRIWRHIVNIEDAEAGGCDLFDIEELRDEYAPDEFANLFLCEFVDDSLSAFRFNDMIACGVDSLVEWTDFNIEAERPYGSRSVWAGYDPQESENGDNAALVIAAPPLVEGGQFRVLERHQLRGLDFEQQAEFIKAILSRYTCTYLGIDAKGVGAGVYQLLAKPGAMPGCSVAKIEYSLELKAQMVMKAQNVVRRGRLAFDVGMLDIVSAFVSIKKTLTSSGRNMTFKAGRGGEDGHADLAWATMHILMNEPLDGKEAPKGTMEII 381710..382738 PHAGE_Burkho_phi52237: pbsx family phage portal protein; PP1Y_AT3701; phage(gi72537722) 8e-104 MNRREAAEASKGALVASNDNRGRAIEAFTFGDPEPVLNRATMLDMLECWHNRRWYEPPVSMDGLARAFRASPHHSSAIILKRNMLAASLDPTPQLSRRAFAGMVQDYLVLGNAYVREIRNRLGEVMRLEHCLAKYTRRGVEPGHFWWVPGYQQEEEFEQGTVHQLMAPDINQEIYGLPEYLSALQSALLNENATLFRRRYYENGSHAGYILYATGEFANGDVDAMREALKKSKGPGNFRNLFVHAANGKETGIKLLPIAEVAAKDEFLGIKNTTRDDVLAAHRVPPQLLGIVPANAGGFGDVTKATDAFFELEIAPLQSVFLELNDVLGFEAVRFWERATAA complement(382916..383695) endonuclease; PP1Y_AT3714 N/A MASRYAKLIEAIFFDHHNADLTEFEFERAELETQAEALRIGLPKNLGDVVYSFRYRNPLPDRILDTQPHGLEWIVEGAGHGRYRFRLVSANRVQPREDLVRIAIPDATPELIRMYALDDEQALLAIVRYNRLIDTFLGLTTYSLQNHLRTTVKGIGQIEIDELYVGLDKRGCHYVIPVQAKGGNDQIGIVQTSQDIRWVEQKYPDMSCRAIAAQFMADDVVALFELTLQDDEVRVVDEKHYRLVPWKELDPRAIVSYRE complement(383688..385025) PHAGE_Natria_PhiCh1: M.PhiCh1-II; PP1Y_AT3725; phage(gi22091184) 2e-30 MSRPIGVDLFAGAGGLSLGFEQAGFDVAAAVEIDPVHCAVHEFNFPDTAVIPRSVAELKGSDIRLAAGIGTRPVDCVFGGPPCQGFSMIGHRVLDDPRNRLVLDFVRIVSELDAKTFVFENVKGLTVGKHRQFLAELVEAFDAAGYQVGQPWQVLDAAHFGVPQHRERLILIGAKKGLPLPAYPKPSTSPADGKRAVKDLPNGPTCSEALDDLPDADKFAALECGDAVRTKRYGEPSSYAAELRALTNNAWHFGYVRNWERDVLTSSARTTHTDISRRRFSETQPGTVEPISRFFRLPPNGLSNTLRAGTDGARGAFTSPRPIHHRYDRCVTVREMARLHGFPDWFRLHATKWHGARQIGNAVAPPMARAIASKVIEALGVAPKRPERAINLGDPKLLDLEMSQAAAHFGVPAPNSRRDRKSGAKKRKQEEIEEARQALVRSAHG complement(385072..385509) PHAGE_Burkho_AH2: Vsr endonuclease; PP1Y_AT3742; phage(gi399529071) 9e-34 MADTRTAVQRRRIMQSVGTKNTGPELAVRKALTELGYRYRLHRKDLPGSPDIAFIGRRKAIFVHGCFWHGHECQKGKAPKSRLDYWGPKLAANVERDKRKAQELCDLGWSVLTVWQCELSDFAGVRERLINFLGKPPRECKTSRA complement(385936..386547) replication protein A; PP1Y_AT3758 N/A MPISMNAKAVLDALLSVMDGKSGRCDPSLDTIARRSRLSRRTVVRQLNVLRELRIIDWVRRTVKTGNARGEGPQRQQTSNAYFIDMLKLPIEIVRTLRQKLGARLREKVRHLEGSGSVPNRMAIKAERLLKSVTGALSATARRDGASRRALAGSSLSSRLAHMYAGNPDAIREHEEMLSLSSATSASAKLALYPVLRTEREVD complement(386687..388060) PHAGE_Stenot_S1: putative integrase; PP1Y_AT3766; phage(gi213163927) 3e-63 MGYWGYRLLLTDAACRKAIPSEKDRKMFDDRGLYLFVRRSGSKLWRLKYRFAGKEKSLSIGPYPEVSISQARQARDRALQQLRDGIDPSAEKQSRKAQAVADALDSFEKVARAWHAAKATTLAPRYSAAVLSRLENNVFPALGQKPIRSITPPMVLAVIRKIEKRGAHDMAHRVRNHMSDVFVWAIASGLSENDPAAIIRKALVPTDPKLRPAMIKITGARKLLADIEALAGTHWSTLLASRLLALTAARPGVVRLAEKQEFEGLDGAAPIWRIPAEKMKLTRAQKRDISWEFVIPLSRQAAEVAKAAISESLACHASDGPSWLFPGTGAWKRPISDSTLSKLYRDAGFTGVHVPHGWRSTFSTIMNERAALEDQERDRAIIDLMLAHAQQGVEPIYNRALYLPRRRELAQDWADLLMKDAVAPQFLLPEYRPWRAKSGETGHERRARIRRPLAQKL 388183..388202 attR N/A AAGTGGATGCCCCGCGAGGA #### region 2 #### 3730993..3732318 PHAGE_Strept_6: terminase large subunit; PP1Y_AT35532; phage(gi93007440) 3e-54 MRRSERLAWLLSLPLRERRRRVRELSEAEQAEFLTHWRLWARPGQLPPAGDWRTWLVMAGRGFGKTRAGAEWVRSIAESDPAARIALVGATLPEVRAVMVEGESGLLAISPPCRAPGFEPSLRRLIWPSGAQALLYSAGEPESLRGPQHSHAWCDEIAKWDNAGGKAGRTWDNLLFGLRLGDRAQAMATTTPRAVPLVQRLLAEPGDELAITRGRTEDNRDNLPPSYLRDMRRTFGKSLLGRQELDGELLDDIEGALWTRVLIEATRTSAPAEPVRVVIGVDPPASAGGDACGIVVAARCGEGRGHVLADASVEKASPERWARAVAGAAAAWQADRVVAEANQGGAMVASVLRAADVSLPIRLVHASRGKVARAEPVAALYEAGKVRHAGQFPALEDELCGLIAGGAYQGPGRSPDRADALVWALTELLLDRPAAPRVRVT 3732343..3733503 PHAGE_Strept_6: portal protein; PP1Y_AT35547; phage(gi93007441) 2e-17 MSFIDTLAAAFKGESARAPLARRPASPWFFADGGGGRIPFEYNRAVRQAYLDNPVAQRAVRLVAEGIAGAPLQSGDPGLMALVAATSAGQSLLETIASHLLLHGNAYVQVIKDGRGRPAELFALRPERMTIVAGDDGWPSAFTYAVAGRQLTIPLLDEDASPNLIHIRHFHPADDHYGAGCLTAANEAIATHNAASHWNRQLLENAARPSGALVYEAGDGNALTGDQFERLRSELSSAFAGSGNAGRPMLLEGGLKWQAMALSPADMDFATLKAAAARDIALAFGVPPMLLGLPGDSTYANYREANRALWRLTLLPLAAKLLAAIGEGLAPWFPDATLAVDLDRIPALAEDRERLWAQVGAAEFLAASEKRALLGLPERPDHAEDK 3733503..3733811 hypothetical protein; PP1Y_AT35558 N/A MTKSDMLTGLVSQAADKGNDIVTLRAIVEEASELGASRMLERIGLDDATAHEDVSELRELLQAWRDAKASAQTAAIGWIVRGLLALLLLGIAVRLGATELLR 3733808..3734206 PHAGE_Marino_P12026: phage prohead protease; PP1Y_AT35556; phage(gi399528321) 1e-14 MNGPRFAGYAALFDRPDAGRDTIRSGAFARTLAERRDPVPLFWQHRPDLRIGWVESLAEDARGLRVIAALDNTQGGAALSLRRGAVSGLSFGYRARASRSGRKGRELLDIDLFEVSLVTRPMQHGARVHLVC 3734264..3735400 PHAGE_Salmon_ST64B: Major capsid protein precursor; PP1Y_AT35562; phage(gi23505451) 3e-84 METPVPTENLEASFDLVARQDATEAAVAEIRTDVADVKSRLERVSRAAARPVIAGSAPASPEVKGFVEGYLRHGRETELKSISGAVAADGGYAVPQEIDALIASRLTAISPIRAIAQVVQTGSAGYRKLVTTGGTASGWVSETAARPQTDTPSFAEIAPPTGELYANPAASQTMLDDAVFDLQSWLADEIATEFARAEGAAFVGGDGVNQPMGFLSAPTSTAADAARTFGTLQHLVSGDAGGFDTAPDLKLIDLVHALKAGHRQGASWVMNSATLAEVRKLKTSDGAFVWQPGLVEGQPDRLLGYPVIEAEDMPDIAAGQCPIAFGNFRAGYLIAERSATAILRDPYTNKPFVHFYATKRIGGQVLDSDAIKLLKIAA 3735461..3736009 PHAGE_Rhizob_3: p008; PP1Y_AT35568; phage(gi195546539) 7e-05 MNRVILSPATLPSSALAEIKQWLGITTTQDDGALQALLETALDLFESFTGQRPLESECEEILDAASGWLTLATRPVHAITALYAVRSDGTRAQLAADRYDIDLDADGTGRVRLLTNVPDRRIAVRFTAGLAAEWDDLPPPLRHGVIRLAAHQHRERETEGAAPLPPASVAALWRPWRSLRLA 3736192..3736581 hypothetical protein; PP1Y_AT35572 N/A MEVPLRAALLDWLAADAALAEQLNAIVEEAPLRTSLPWLAIAASASIDWSTKTASGREVRVALELHCRGDRPDAAATLVTAIEARIEAMPREQSGFSIVSARFLRARAEQRTESRRAILLEYRFRLLSQ 3736617..3737024 PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; PP1Y_AT35574; phage(gi461474972) 4e-12 MSAQKGSAFLLKISDGGDPAAFQTVAGLRTTQMSVTGEPVVVTSKDSGGWRELLSGAGVRAVSVSAAGIFLGSAAEAQIRANAMNGTLDSYELSFEDGEKLRGSFLVQRLDYAGDFNGERNYTLQLESSGEVSAA 3737021..3737353 hypothetical protein; PP1Y_AT35580 N/A MRQAQADRAPPNPLRGEAALDIDGSAHVLRPTFSALVAAEEELGPLFALVERAGAGELRLSELAALFWHCLADRQSLSREAIGEAIARCGLAACAGPLRALLSQILKGSG 3737537..3738112 PHAGE_Cyanop_MED4_184: tail tape measure protein; PP1Y_AT35588; phage(gi472340568) 4e-06 MDDEIESLLVDVRASTEGFSRDIAAMRTSVETDLVSGFTKAGDALERSLSGAIRSGSMGFDDLKRVASEALGAIAAQAAQGLTSALGIGAGASGGPVDFGSILGSALGLPGRATGGNVSPGRGYLVGERGPELFVPTSAGRVEPGSAGQLAGRDVRVSINLVAPRGSSAPQSLQRSSRQVASAVRRALSRS 3738179..3740509 PHAGE_Escher_phAPEC8: hypothetical protein; PP1Y_AT35594; phage(gi448260438) 3e-46 MAFWLASQRQGQASDWIQRFDARFWTVNFPRPMVATVISTAADALRVDASFLRKADLGGLIWASEDTLDHPLLAYRTDRNYAHTSLRFRWRSGGVLPLDAVYGPTLTIEGRDESGAARTWYVRLWNYAEGNGEDAQIDLRFSDLESGFSLPGERIWPGDIDRMFISFAPRGYDGSADPLPAEAEGWIEISEIAVGGSRAMLEIGDVMMPPHGLALATGFDDQGVQTPARLLRNVRQLGYRGSVVLYLGMSHYFRLAAKDGSYLTGSSADPLNTPTRNWHRTFFAECLRLGFSPMASLSYELLDQHCPEGWKQRDHLGQPALTGWAPPSTVLSPANDAAMAWLQSVAAEFALLMAEAGAPVRFQVGEPWWWTFADGRICLYDEAAVAALGGAPPAISDMRAALDDAQKALLDAAGALLAQSTADVIAAVRGAVAPEPVEALALVFTPTLLDPEMPELKRANLPLGWAAPAFDRLQVEDYDWLTAGADAPRRRAYEEVNARLGYPPEEQDYLAGFVLYQTQADQWRLIDAGIDEATLRAPHEIVVWALPQIARDGFVRLPSIASQGSAMQAFDDVPYPLRLGHDASVSPEFSTAVSVTASGFERRNSLWSDARLRFDVGPGIRSEQELGQLIAFFRARRGPARGFRLRDPSDYSSNAMTGTPTALDQSIGIGDGARTAFALVKRYGEGEEAQVRRITRPDFATILISVDGTVQAGNWSLVGGGTILFDDPPAAGSVVRAGFLFDVPVRFAEDRLDISGAAFAAGEAPSVPVIEIREAA 3740506..3741330 PHAGE_Tetras_SI1: hypothetical protein; PP1Y_AT35611; phage(gi472342235) 6e-29 MTRTWFAQDLETVATFWRILRRDGVTFGFTTHDRDLWFDGVLHGASPGMVPSSIRKRADLDPDSVEVQGMLSDDAISGADLASGRFDGSRVLIGLIDWETLERMTLYSGTLGEVTQEGEDFSASLASRKAELQRDPIPRASPTCRAAFCGPGCNLNPQRFTREVKLLTIDARANAATFETDVDAALYVGGELRWVDGPRAGIAMTIMSADPAGGLVLDAPLDEATPPGSAAVLREGCDRTLETCAARFGNAVNFRGEPFLPGNDMLTRYPSPIQ 3741744..3743939 PHAGE_Tetras_SI1: hypothetical protein; PP1Y_AT35629; phage(gi472342233) 2e-54 MATLIFSTVGTAFGGPIGGMIGSLVGQGVDTAIFGSDRREGPRLQELQVTASTYGQPLPRHFGAMRVAGSIIWATDLIEHSETQGGGKGAPAVTTYSYTANLAVALASRPILGIGRIWADGKLLRGAEGDLKVGGTMRLYTGEGDQPPDPLIASSEGAALCPAYRGLAYVVFEDLDLSEYYNRLPAMTFEVLADESFDLQDVVGELVDAIDAQVPLDGIGGYTADGPVAQSIETFDLVIPLSVSGNGEALAISHESRGESPVPLPAAAISVEDGDFGGPLGFTRHRLPASQHPVRCLRYFDAARDYLPGIQYASGSPPPGQPRCIELPAALDAEKARALIERASRRIDWTRERMAWRSCELDPAIVPGSTVSVPGVAGAWRVAEWEWRASGVELSLERLPPPGAIGTPGLKADSGRANLPADLPTASTELVAFELPLGTANGNADTPHAFVAVSAGSSNWSGAALYADRGDGEMLPLGPSGRTRSTIGAAATRLEPGHPLLFDRERSVEVTLVDPAMSLGPASLRQMAQGANLALLGEEIVQFAKALPLGEGRWELSGFLRGRGGTERAMADHAIGERFVLLDSRLVALDASTLGTSDGRQVLAIGRGDSEPATASILLAGITLRPLAPVHPRHAIRSDGSLHLAWTRRARGAWPWQDGVDVPLVEEAERYLVTLGPLDAPAASWHTQTPELAIAPNVLAQLSAAYPAQPLHVRQQGTHALSAPLLLRPVS 3743963..3744421 PHAGE_Tetras_SI1: hypothetical protein; PP1Y_AT35644; phage(gi472342232) 9e-06 MSDPVIFESNSPRLALPLLYSGQAGKEILVNEAFARIDAAVHCTILGENPEPPENPAEGDSWLVSADSQGEWAGHEHEIAARQGGNWIFLQPHDGMRIFDRSSGQERLFFAFWRKGSILEEPVGGSTVDEEARASINEIIAVLQALGISPSA 3744614..3745669 PHAGE_Human__4: EBNA-2; PP1Y_AT35659; phage(gi82503202) 4e-10 MRKLVIGLALASTAIATPAFARDDSWYLELDFGGMIVEDADFDIDGVNNAATLDTHTGYDGGAAIGYDFGGFRLETEASYRRAENDTVSDIDLGTFSDRGHSSMLSFMVNGLLDFGPDDGIQGFVGGGVGVGRVDYRFEGVGSDSDTGFAWQALAGVRAPITKHWDAGLKYRFMNVDNVDVVLGGSDASTRWRSHSLMATLGYNFGGEEAAPPPRPPPPPPPPPPPPPPPPPPVVCNKGPYIVFFDWDKSDITPEAATILDSAVSAYGNCDNVPIMLAGYTDRSGTVKYNMGLSERRNASVRSYLTSHGIPDGAISSEAFGEANPRVPTADGVRELQNRRVEITYGPGSGM complement(3745832..3746527) PHAGE_Mycoba_Qyrzula: gp3; PP1Y_AT35671; phage(gi109521761) 4e-25 MQDHSSNQPRQAVVLLSGGLDSMVSAGLAKEAGFAVNALTIDYNQRHRREIDAARRIAEELRAERHVVLPLDLRRFGGSALTDDIDVPKDGVGPDIPVTYVPARNLVFLSLTLAWAETVGAKDIYIGVNALDYSGYPDCRPEFIAAFENIATLATKVGAQGNAFTIHAPLQYMSKAEIASEAHRLGLDAGMSWSCYDPQPDGRACGLCDSCRLRKAGFEQAGLVDNTDYAA complement(3746566..3746967) hypothetical protein; PP1Y_AT35680 N/A MSKLALAMLFGGASLAVALPAYGERNSLSMLDHLESGDWELRQRDGAGQSNICLDSGRKLIQLRHPGLNCSSVVVEDTPNEVTVQYTCRGQGYGRTHIRRETDSLVQIDTQGIVNGRPFVYAAEARRIGNCRS complement(3747083..3747973) molecular chaperone Hsp33; PP1Y_AT35687 N/A MNEETGFDRVLAFTVPDRHARGRLVRLGPALETVLSAHDYPKKVKHLLAEALVLTALMGSLLKENGSQLTVQAQADGGPIDLLVCDYRDGEIRGYVRHDDDLLAQLGEDETSLEALFGKGYFAITFDLAVTKERYQGVVPLEGESLAQACESYFAQSEQVPTLIRVAVRSNDPRCVAGGLLVQHLPEGEEGKARLHAQEDHPDWAHVSIMAGSTKPEELVDPVLNLEQLVWRLFHEESEVRVEQLGHLRRGCRCTVEHYLSILSRFEEKELAEMRDDDGTIPVDCAFCSKVLQIPV complement(3747991..3748917) PHAGE_Parame_NY2A: hypothetical protein NY2A_B222R; PP1Y_AT35693; phage(gi157952526) 2e-16 MTRHFLSLSDAGGDTLAAMLNDAIDRKAARKDWPKARVDADGPLAGHVLAMIFEKNSTRTRVSFDMAMRQLGGSALIMEAGSTQLGRGETVADTARVLSRMVDAIMIRTDDHAKIEELAHYAEVPVINGLTDLSHPCQIVADLLTVVERGFALPGLQVAWLGDGNNVANSLIEAAGQMKFTVRIGGPAGYEPNAGFIEQARAAGGEVILTQDPTEAVKGAQVVVTDTWVSMGQPGGEKHVAAMQPYQVNTALMAQADPRAMFLHCLPAHREEEVTNEVIDGPQSAVWDEAENRLHAQKSVLLWALGKL complement(3748917..3750107) PHAGE_Mycoba_Myrna: gp183; PP1Y_AT35701; phage(gi203454746) 2e-13 MSITPLMPVYPRCGVRPVRGEHCHLISEDGRRFLDFASGIAVNALGHSHKGLIGALQKQAETLMHVSNLYGSPQGEAIAQRLVDLTFADTVFFTNSGAEAVECAIKTARAYHQSVGNDGKYELITFNNAFHGRTMATISASSQEKMHKGFLPLLPGFKYVDFNDLEAAKAAIGPNTAGFLVEPIQGEGGIRIADEAFLQGLRQLCDEHDLMLVLDEVQSGVGRSGTLYAYEQYGIEPDIMATAKGIGGGFPVGACLATEKAARGMVAGTHGSTYGGNPFAMAAIGAVLDVIADDEFLEGVRATGERLKARLEQFIGNYPDLFELVRGRGLFIGLKMKVEPRPFVAHMRDNQQVLAVSAGDNVVRVLPPLVIDDSHIDEFMEKLSAAAASYNPEEVS