Definition Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequence.
Accession NC_015063
Length 133,486
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 5 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 20732..20749  attL    AAGGCGCTGGTGTCGCTG  N/A  Click
2 complement(24141..24386)  prevent-host-death family protein; Rahaq_5077  N/A  Click
3 complement(24801..25808)  PHAGE_Burkho_KS14: gp37; Rahaq_5078; phage(gi327198306)  3e-10  Click
4 26737..27372  PHAGE_Burkho_KS14: gp40; Rahaq_5079; phage(gi327198309)  2e-19  Click
5 27366..27626  hypothetical protein; Rahaq_5080  N/A  Click
6 complement(27841..28632)  integrase; Rahaq_5081  N/A  Click
7 42717..42734  attR    AAGGCGCTGGTGTCGCTG  N/A  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 65577..65588  attL    TCAGCATGAGAG  N/A  Click
2 67220..67231  attL    AATAAAATATAT  N/A  Click
3 complement(77688..78470)  PHAGE_Staphy_phiETA: similar to phage phi 11 integrase; Rahaq_5124; phage(gi17426229)  8e-06  Click
4 complement(78467..79171)  hypothetical protein; Rahaq_5125  N/A  Click
5 79236..79248  attL    ATTAAGCGTCGCA  N/A  Click
6 79446..80441  hypothetical protein; Rahaq_5126  N/A  Click
7 80445..81062  hypothetical protein; Rahaq_5127  N/A  Click
8 complement(81074..81868)  PROPHAGE_Xantho_33913: ISxcC1 transposase; Rahaq_5128; phage(gi21231060)  7e-86  Click
9 complement(81919..82185)  PROPHAGE_Salmon_LT2: transposase; Rahaq_5129; phage(gi16766077)  2e-39  Click
10 82256..82588  hypothetical protein; Rahaq_5130  N/A  Click
11 82702..82714  attR    ATTAAGCGTCGCA  N/A  Click
12 complement(82962..83939)  hypothetical protein; Rahaq_5131  N/A  Click
13 complement(84295..87279)  PROPHAGE_Xantho_33913: Tn5041 transposase; Rahaq_5132; phage(gi21231545)  3e-32  Click
14 87440..88018  PHAGE_Entero_2: DNA-invertase; Rahaq_5133; phage(gi169936026)  1e-21  Click
15 88271..89086  short-chain dehydrogenase/reductase SDR; Rahaq_5134  N/A  Click
16 89116..89877  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Rahaq_5135; phage(gi116326757)  1e-08  Click
17 89920..91119  PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; Rahaq_5136; phage(gi163932195)  2e-05  Click
18 91130..92065  AraC family transcriptional regulator; Rahaq_5137  N/A  Click
19 complement(92097..93005)  AraC family transcriptional regulator; Rahaq_5138  N/A  Click
20 93127..93660  alkylhydroperoxidase; Rahaq_5139  N/A  Click
21 complement(93872..95080)  major facilitator superfamily MFS_1; Rahaq_5140  N/A  Click
22 95184..96101  LysR family transcriptional regulator; Rahaq_5141  N/A  Click
23 complement(96300..97217)  PHAGE_Xantho_vB_XveM_DIBBI: putative AraC family transcriptional regulator; Rahaq_5142; phage(gi389060447)  3e-06  Click
24 97316..98383  aldo/keto reductase; Rahaq_5143  N/A  Click
25 98384..98395  attR    AATAAAATATAT  N/A  Click
26 98611..99120  hypothetical protein; Rahaq_5144  N/A  Click
27 99224..99826  PHAGE_Strept_1: site-specific recombinase; Rahaq_5145; phage(gi28876169)  2e-13  Click
28 106451..106462  attR    TCAGCATGAGAG  N/A  Click