gi|322836370|ref|NC_015063.1|  Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequence. [asmbl_id: NC_015063].133486, gc%: 48.34%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
20732..20749                       attL                                                                                 N/A                 AAGGCGCTGGTGTCGCTG
complement(24141..24386)           prevent-host-death family protein; Rahaq_5077                                        N/A                 MRHITFTEARTNFANILNQVSDDADTVVITRRGSRDVVMLDADEYSSMVETLYLFSNPANAAHIEASLAQLDSGDTVEIDV
complement(24801..25808)           PHAGE_Burkho_KS14: gp37; Rahaq_5078; phage(gi327198306)                              3e-10               MDKQSVKKLYVTQDNKLLEGAYSATLDEMRLLYLALVQIDSKRPQPDGIYTLFPADFEKMFGVNPSHTHQQLKKAADSLGSKPIVTFEWNEKKQRLDKVKRFWFSSIRYDASDNSADVTIRFSPDVVPYLYDLKREFTQVDFQHVSKLDTPFAFRLYSWLVKFRKLTKNARNNGIIETDALEIDWMKERTGLVGKYEEYRFFKRDVLVPAVERINANTDISVTWEPVKMGRSVKAIKFFYITETGTTSAKPLRPRLPRRPHVIEGSDKEGAWARKCIGVMQDFRARLEEYDPKEKLPLADLKKWLHWYEIIGDEVSVKRMRSEISGRLKRKTAVV
26737..27372                       PHAGE_Burkho_KS14: gp40; Rahaq_5079; phage(gi327198309)                              2e-19               MIILIGSQKGGCGKSTTAANISAELARQGKDVMLVDADRQGTASNWISDRNQNTDLPKIHSIQKFDNIHETLSDLAKRYEYVVVDSAGRDSRELRTGMSAADVLIVPFRPSQPDLDTLPALHDIITMALDLNSKLQVKALLTMAPTNPVVNETQDAKIYLADYPVLSLMQTIIRDRKIYRDCMSEGKGVVEMDNGKARGEIQCLVQEIVKW
27366..27626                       hypothetical protein; Rahaq_5080                                                     N/A                 MVKRRERPVQLADAEKIEAFAAQAESKPIQKPVLSKDAKRDFKAIRVPFNEYEFTQLEALCEKTQRSKLNMIRHALSFYAENGFSE
complement(27841..28632)           integrase; Rahaq_5081                                                                N/A                 MTDMTTLPGSERRPMLMVRPEDHRRALALRQMAMAYTDLPRYLLLPEVSALLHYLPDWSQHALVSTLWNTGGRINEVLALKRRDFRLNGDYPHVVIRTAKQRRAGTGRPAKGKSANRVVPLSDPGFVDELRRLFASTRERIEADALTGERRPLPIWTATDRTVRNWLTRAVDEARRDGVTFSVPVTPHVFRHSYAMHHCYQHTPLKVLQALLGHEKAESTEVYTRVFALDIAASQQITFSMPESQAVMLLKETHRENGFLMQK
42717..42734                       attR                                                                                 N/A                 AAGGCGCTGGTGTCGCTG

#### region 2 ####
65577..65588                       attL                                                                                 N/A                 TCAGCATGAGAG
67220..67231                       attL                                                                                 N/A                 AATAAAATATAT
complement(77688..78470)           PHAGE_Staphy_phiETA: similar to phage phi 11 integrase; Rahaq_5124; phage(gi17426229)     8e-06               MNDLVTYTPPLHQMAQLPVAIDYPAALALRQMALIQDELPKYLLAPEVSALLHYVPDLHRKMLLSTLWNTGARINEALALTRSDFNLAPPYPFVQLATLKQRAEKAARTAGRLPAGSQALRLIPLSDALYVSQLQMMVATLKIPLERRNKRTGKTEKARIWEITDRTVRSWISEAVEAASCDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRVFALDVAARHRVQFSMPGADAVAMLRQTSR
complement(78467..79171)           hypothetical protein; Rahaq_5125                                                     N/A                 MADGISVWVPVISALAASVLTGTIQYFMNRQNHYFALEREEKAMAERLRQEKEVKQEKIDRERHFIAIELVFLLEQFAEACSNVVADTGENNDDPQPTREPTVDYPELSFTDVSGNWQVLDTRLMYRIRELLVLQREAHKAIAHIREYDYDGDCKDYFRERWYQYAYLGLKAIIQVRRLRKMAGFPDTRLANSEWSAQPVLKEMWRIERRRRAKESIEYRKLFEDQDNPESITL
79236..79248                       attL                                                                                 N/A                 ATTAAGCGTCGCA
79446..80441                       hypothetical protein; Rahaq_5126                                                     N/A                 MATTVIAAFNEFMKDTVNLEKADTDDARASRDWLIGKINDFENDEVFPVSYPGIHIAFGSFARRTKIRPLDDIDLMFGLTGQGATYTILSDRVTVTSSGEGSRLHRYRHSGADTVCSVRILNAFKSRLQDIAQYAQADIRRNQEAVTLKLVSKDWNFDVVPCFITSEDAYGKTYYLIPDGNGHWKFTDPRIDRDRVKSINVKNDGNVLNVIRAVKYWQRRSTMPSMSSYLLETLILDYYAGRTSCLSFVDMELEALFRHLGLFVQFSVNDPKGIQGDINSLSDEARKAISDRCYLDAQKASEARQFENNKEYEKSINKWRDVFGPSFPVYG
80445..81062                       hypothetical protein; Rahaq_5127                                                     N/A                 MNAIYTNQSTRENLDLLYAQARVYDRVKNWNKLNFLFSIIVPLLLSLVTVYNRSREFVDSELLSSLLGLYGLLVLTFNIAISGHISALRRKAASIQEMYDCRVLGIRRNELKVEEISRDEIIRAAEYFRNSPEKARKRFGEEGWYVSKVYDAPQAVMALLCHGKNLGWDKSLREVLHVFYLSAFIVSPVAMLVYGIAMKSGLNEM
complement(81074..81868)           PROPHAGE_Xantho_33913: ISxcC1 transposase; Rahaq_5128; phage(gi21231060)             7e-86               MSLRQACRTLSLSRTVFSYQPDTRRDEAVIQSLTEAVERYPRYGFKKLFQVLRRQGHVWNHKRVHRIYCLLKLNFRRKGKQRLPVRNPAPLATPEALNQSWSIDFMHDALTCGRRFRTFNVVDDFNREALAIEIDLNIPAQRVVRVLDRIVANRGYPLKMRMDNGPELISLALANWAEEHGVMLEFIKPGKPTQNAFIERFNRTYRTEILDFYLFRTLNEVREITERWLMEYNSERPHESLNNLTPEEYRLMAENTEISKSAWN
complement(81919..82185)           PROPHAGE_Salmon_LT2: transposase; Rahaq_5129; phage(gi16766077)                      2e-39               MRKIRFTEHQIIAVLKSVEAGRTVKDVCREAAISEASYYNWKAKYGGMEAADIKKIKDLEDENRRLKQMFADLSLECRALKDVIEKKL
82256..82588                       hypothetical protein; Rahaq_5130                                                     N/A                 MLTEILFYVVFTLPVIRYFLLQFLDNRSSMKRSEKLKKYVEKELSGIRVSGRAEEEKLGYTLRNIQDEMFAYRASCPPVPNGIQLIMKPKNERIYVDYFETNLKELHLQE
82702..82714                       attR                                                                                 N/A                 ATTAAGCGTCGCA
complement(82962..83939)           hypothetical protein; Rahaq_5131                                                     N/A                 MATVSISYSTYDPTDQTNERILGTEHIDNIEEILVPLNDKNTPIFITKAFSGEVCKRWRVRFFLGIAPDHWGVWLTEKDVSKDIYLSEILTKRRIGNAAGFVKKGAIVIVEFGHIYQTLNFQTGLTKSAMYPCNHQEGEMHKRRPAVVVKVDRRGVTVVPVTSKEPDAHEYNRAIFELETESIQHIKELDTGKRSFAVCEMIQTVSPTRILPPESRDHKGRDRTYRRDESFSRRLSRNDMKALEQGLLAAVGMYSLQEKLDRTIQNGQLQSAELEELRPEVETIREELAELRDKYRILSDLYLASSGHVTREDVEQEVIEYMGLD
complement(84295..87279)           PROPHAGE_Xantho_33913: Tn5041 transposase; Rahaq_5132; phage(gi21231545)             3e-32               MPRRQILSSEEKERLLIVPDDDVLLTRMCFLSEPDLALINKHRRPANRMGFAVLLCYLRGPGFPPDKNISPHDGVVSRLAAHLKLLPDLWAEYASREVTRWEHLAELYRYLELSPFNRALQKNCIRHLYPHAMRTDRGFLLAEEMLTWLHNNKVIFPSVDVIERTLAEATTLADRAVFSALTAQLEPEHKAALDRLLVSEGEQPSRLAWLLQPPGKINGKNVLQHIDRLNSIESLALPDGIALSVHQNRLLKLARESRKMSSRDLAKFTDVRRYASLVCVISEARATLTDEIIDLHERILGSLFSKAKRTQAERLQQTGKLIQSKLKQYVTVGQALLNARESGEDPWTAIEDVLPWQEFINSVEETRFLSRKDNFDPLHLITEKYSTLRKYAPRMLSALQFMAVPAAMQLSDALDAVREMYRKQLRKVPSSAPTGFIPESWRKVVLTPTGIHRKYYEFCVLNELKGALRSGDIWVKGSRRYRNFDDYLIPSSDFEKSLRDNQLPLAIPTDCHEYIKSRMTLLASRLEEVNAMALAGDLPDVDISDKGVKITPLDNSVPSSASPFADLVYGMLPHPKITEMLDEVDSWTGFTRHFTHLKNHHVRLKDRKLLMTTILADGINLGLTKMAESCPGTTKSSLEGIQAWYIRDETYSAALAELVNAQKKRPLAAFWGDGTTSSSDGQNFRVGSHGHYAGQVNLKYGQEPGVQIYTHISDQYSPFYTKVISRVRDSTHVLDGLLYHESDLEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRLFIHGKAERYPGLQSVISTTPLNLKDIETHWNEVLRLASSIKQGTVTASLMMKKLASYPKQNGLAKALREIGRIERALFMLDWFRDPSLRRRVQAGLNKGEARNALARAVFMHRLGEIRDRGLENQSYRASGLTLLTAAISLWNTVYIERAIDFLRRKGIPLNDQLISHLSPLGWEHINLSGDYVWRTNLKLGQGKYRSLRSVDSGLYKKQA
87440..88018                       PHAGE_Entero_2: DNA-invertase; Rahaq_5133; phage(gi169936026)                        1e-21               MSRVFAYCRVSTLEQNTENQRREIESAGFAIRPQRLIEEQISGSVAASERPGFIRLLDRMENGDVLIVTKLDRLGRNAMDIRKTVEQLAASDIRVHCLALGGVDLTSPAGKMTMQVISAVAEFERDLLLERTHSGIARAKAAGKRFGRPSVLKEEQQLTVIARINAGISISAIAREFNTTRQTILRVKAGQQ
88271..89086                       short-chain dehydrogenase/reductase SDR; Rahaq_5134                                  N/A                 MSLVTQPGKGTAVITGASTGIGAVYASRLARMGYDLIIIARNHNRLNQMASHITADTGRNVEVLAADLGDAQQLAVVEQKLRADASITLLVNNAGVGTHTPLLLSDVDQMQAMINLNVVALTRLTYSVVPGFVDRGAGAIINISSIVSLAPELLNGVYGGTKAFVLAFSQSLHHELAEMGIHIQAVLPGATATPFWDNGGLPLEQLDKSIVMSAYDLVDAALAGFLNGELVTIPSLHNDAYWQAMESSRQAMIPQLSSNVPADRYRVGLTH
89116..89877                       PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Rahaq_5135; phage(gi116326757)     1e-08               MKLTGNTIFITGGTSGIGRAMAEKFHQLGNQVIISGRRKSLLDTVTAANSGMDSVMLDVTSASSIKSAAQEVLSRYPALNVVINNAGIMPFDNASAELDDDMATTLLDTNLLGTVRVSSAFVEHLKQQPDAVLINNSSILAFLPLVTNALYSATKAAIHSYTLSQRFLLRDAGVTVIEISPPWVDTDLIYKSGDSRAMPVTDFIQQTFDKLATDSIEAIVDRVLPARANPGANEHEMVNAFNQSMMDNPIPVA
89920..91119                       PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; Rahaq_5136; phage(gi163932195)     2e-05               MQNHLPTSQRRALWALSLAYFIQATGSLSVAGSLVSISQEWGITDGQSARLLSIFGLTFALGAPLAQVVFGKLMRRTQVLAGMLVFGLGALIFAIAPDYRVLVASRIVMGLGASLIGPVLIALGAELVAPKERGSAIAMILLGVSMASMVGIPLATWLATVLGARMLFTLIALLSVLTASAVFLLVPNVVKGVDIRLRQVGMVLKEGKSLAAFLVVFFITSGVYDMYAFISPMIRDRWQGDTSATSIALAVIGVAGIIGNLFVARSARHYSAEHLLVVGLTLLVADMLLVMVLPARLSLLYLLLVVWAFSTDLLWPTQQRRIVEISTAETRGISLALTSAFMFCGIGFGSAVASWLYPLSGFYGVMISSVLFLLLALASLWTSERLRARSAEYQTVRLS
91130..92065                       AraC family transcriptional regulator; Rahaq_5137                                    N/A                 MHRIGLIIADHFQMLALSTLTVFEFANLVADRPFYQPLVYSEHGGTVRSSSGIGVDSAKLSAETQVDTWLVAGVLSPMKEPASPGVVHFLQTTARQTRRIAGICTGAFVLAQAGLLEQKRATTHWAHSQSLASQHPTIQLEDDRIFIIDDTIWTSAGMTAGLDMALGMVEKDLGADIARTIAHRLVMNQRRSGGQTQHSEMLALAPRSDRLQTALEYARKNLHKTLTVEILADAVHVSARQLSRLFRQETGKSPAKAIEGLRLEAARLMIEQSRLSLDAIARESGFRDRRHMREVFIRGYGIPPQSLRAGR
complement(92097..93005)           AraC family transcriptional regulator; Rahaq_5138                                    N/A                 MDNLSRLLSLLAPTCRVNLHCRFAGRWNADHPQQVDGIVPWHVILHGETRLVVEGKTFDVRAGDIVLFPQGSPHLLQSLVDWGQVVPAQVNDDGIVTEVWTEGPGPAVEVLCGEFHFDPGYRWIFADETTLIHLRTDERHDCPELETLLVMLVRESLGSLPGSASIVKGLADTLLALILRILLSLREPPAGVLRLLSDTRLAPAVLAVIADPASPWTMELMAQRCFLSRATFARHFSNSYHQTPQAWLNQLRMMLAAKILSEERNLMMEGVAEQCGFLSLSSFTKAFKKTYGVTPAQHRKRE
93127..93660                       alkylhydroperoxidase; Rahaq_5139                                                     N/A                 MSRLTSVHPENATGQTADLFSAIKRAMGKVPNAYQTIGIAPDILGQALQHNVTLTKSELNKQEIEAVNLVVSEVSGCDYCLAAHTLTGKMAGYSVEQIQALRRGEYPEDQHIDALVRFVKTLVTTRNTLPEETVSRFLAAGFSDRQVVEVISAVSAILFTNMINRVNDTVVDFPRIN
complement(93872..95080)           major facilitator superfamily MFS_1; Rahaq_5140                                      N/A                 MSLITPTFNHKALIRIAVVMAFIQFTNALEYMMFNPVFAFMAADFAVPVSFSGYVSGMYTSGAVLSGIIAFYWIGRFNKKRFLIANMALLCLLTLLTTFTSSFSLLLALRFSAGLVGGTTMGVGISILINLAPANLRGKMLATVIASFSMVSIVGTPTILFVCAHYGWHVALWLISTLCLLALPLIVSIIPKDPVSFDTPHAMPIDVNTLLFASSNALVQFSPMLVIPVLVPLMTQQLGASQYLLPGLFFAGGVAGYLSTKMTGALTPHFSAVSLATGSTFVFLLALLIPVMGYSHPALFIILFLGASYSRLVSSSAVSIQFPDDRQRAGFTSLQSSIMYLITTVAFFLSAFLLPGHAIAPQNMNTLLGVCAISASGFPIVVIILQKKLAKRTLQPNHLIND
95184..96101                       LysR family transcriptional regulator; Rahaq_5141                                    N/A                 MRPALDFNTLKVFIAVVERDSFVGASKVLEMPTSNVSRCISQLEDRLNLQLIERSTRYMKLTQAGHLLYTRTKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQHPDLEISCVTNLSGLESLRDDLDLAIIVSRGQLDDSDYIARHLVTIPCTIVAAPSVIQRYGIPSRIQQFETLPCITTVNALKGAPWQFVNKKGGFETIKVKGHYRVNSGEMAGRAAVAGVGFAILSKQACQPYIDDGRLIEIKFEQPPAPLQLFALYSDRRYLPAKTRALIEYIHQNLSNTSLAT
complement(96300..97217)           PHAGE_Xantho_vB_XveM_DIBBI: putative AraC family transcriptional regulator; Rahaq_5142; phage(gi389060447)     3e-06               MDPLSDILSLLKVEAILTARMEARGPWAMRFPSYKHIKFGTVLEGNFWLWMVGMQPLLLEKGDFYLLTSGDAYCCGSSPALMVSDGRQIFSSHREADGVVRYGQGELISEGIGGRFVFEEASSPLLLKHLPPVLVSRREESSSPALTALITLLSHETSALRPGHDIVASSMAILVLVQMLREYLEGNQKGTSWLKALGDRKIGTALSLIHSSPSADWTLASLSAKSAMSRSAFASRFHQLTGSTPGNYLTSWRMELACAELRKHHLSISEIARLTGYKSVPSFSLAFKRHTGRTPGGYRNLHKNT
97316..98383                       aldo/keto reductase; Rahaq_5143                                                      N/A                 MKYAELGKTGVYVSRICLGTMTFGGADNAAGNAIGRLTGKEADIIVGEALDAGINFIDTADVYGSGGSESVLGEVLAQRRGQVFLATKAHSRMNAGPNDAGQSRYHLMQALEASLRRLKTDHIDLYQVHNFDAATPPEEVLRTLDDMVRQGKVRYIGCSNYAGWQLAKALGVSAEHKLEKFVSVQSFYSLACRDIEHELLPAIKDSHSGLLCWSPLAGGLLSGKFDRSGNHDASGRRAKIEFPPVDKNQAWDIVDVLRAVSEKHNTTPACIALAWLLSSPQVTSVIAGVRNVEQLRGNLCALSVELSEEEKGMLDEVSHPGIRYPGWIQSYNAASRFPAGFTDTGPSWVLGESPV
98384..98395                       attR                                                                                 N/A                 AATAAAATATAT
98611..99120                       hypothetical protein; Rahaq_5144                                                     N/A                 MRRIIVVEYEEQWHTRYEAERGLLQNTLGKVISQVHHIGSTSIPGLSAKPIIDILLEVYDLDELDKLNFAMERAGYCVRGENGIPNRRYFTKGEEHRSHHVHAFGVGNPQIVKHLAFRDYLRKNKKEADEYAEIKHAAALASEDNIPLYSTLKADFIAHHLRLALRDYK
99224..99826                       PHAGE_Strept_1: site-specific recombinase; Rahaq_5145; phage(gi28876169)             2e-13               MNTSPWNKDRIIGQKRPLQISHIWGIRIRLKLEGKTRDLALFNMALDSKLRGCDLVKLKVSDVAYGSSVSSRATVLQQKTGSPVQFEITKGTREAVAALIKLGNLHSKDYLFQSRVGSCQHISTRQYNHIFHGWVGKLGLEDSLYSTHSMRRTKPYLIYKKTKSLRVIQLLLGHKKLESTVRYLGIEVDDALEISESIEV
106451..106462                     attR                                                                                 N/A                 TCAGCATGAGAG