Definition Bifidobacterium bifidum S17 chromosome, complete genome.
Accession NC_014616
Length 2,186,882
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 85135..85147  attL    GTTCAAGTTCAAC  N/A  Click
2 85345..86595  PHAGE_Mycoba_Breezona: integrase (Y-int); BBIF_0066; phage(gi508177369)  2e-18  Click
3 86605..87330  hypothetical protein; BBIF_0067  N/A  Click
4 complement(87466..87849)  hypothetical protein; BBIF_0068  N/A  Click
5 complement(87869..88015)  hypothetical protein; BBIF_0069  N/A  Click
6 complement(88097..88429)  hypothetical protein; BBIF_0070  N/A  Click
7 complement(88763..88957)  hypothetical protein; BBIF_0071  N/A  Click
8 89094..89345  hypothetical protein with the helix-turn-helix motif; BBIF_0072  N/A  Click
9 89395..90177  PHAGE_Lactob_c5: putative antirepressor; BBIF_0073; phage(gi418488189)  2e-44  Click
10 90174..90401  hypothetical protein; BBIF_0074  N/A  Click
11 90402..90701  hypothetical protein; BBIF_0075  N/A  Click
12 90692..90898  hypothetical protein; BBIF_0076  N/A  Click
13 90895..91341  PHAGE_Pseudo_AF: putative enoddeoxyribonuclease; BBIF_0077; phage(gi431810354)  3e-11  Click
14 91354..91749  hypothetical protein; BBIF_0078  N/A  Click
15 91749..92195  hypothetical protein; BBIF_0079  N/A  Click
16 92192..92380  hypothetical protein; BBIF_0080  N/A  Click
17 92364..93446  PHAGE_Mycoba_TM4: hypothetical protein TM4_gp59; BBIF_0081; phage(gi18496942)  1e-19  Click
18 93463..94275  PHAGE_Mycoba_Angelica: gp65; BBIF_0082; phage(gi304360822)  4e-17  Click
19 94531..96918  phage primase; BBIF_0083  N/A  Click
20 96922..97275  hypothetical protein; BBIF_0084  N/A  Click
21 97268..97753  hypothetical protein; BBIF_0085  N/A  Click
22 97726..97911  hypothetical protein; BBIF_0086  N/A  Click
23 97908..98129  hypothetical protein; BBIF_0087  N/A  Click
24 98215..99015  hypothetical protein; BBIF_0088  N/A  Click
25 99099..99440  PHAGE_Mycoba_Leo: hypothetical protein; BBIF_0089; phage(gi514361030)  3e-07  Click
26 99561..99956  hypothetical protein; BBIF_0090  N/A  Click
27 99916..101367  PHAGE_Mycoba_Leo: terminase; BBIF_0091; phage(gi514360974)  3e-100  Click
28 101364..102839  PHAGE_Mycoba_Leo: portal protein; BBIF_0092; phage(gi514360975)  5e-53  Click
29 102934..103944  PHAGE_Mycoba_Job42: capsid maturation protease; BBIF_0093; phage(gi514051830)  1e-08  Click
30 103902..104147  hypothetical protein; BBIF_0094  N/A  Click
31 104210..104294  tRNA  N/A  Click
32 104357..104950  PHAGE_Mycoba_LeBron: gp7; BBIF_0095; phage(gi304360956)  5e-11  Click
33 104973..105947  PHAGE_Caulob_CcrColossus: putative major capsid protein; BBIF_0096; phage(gi414088137)  7e-47  Click
34 105940..106170  hypothetical protein; BBIF_0097  N/A  Click
35 106172..106561  PHAGE_Strept_SM1: gp42; BBIF_0098; phage(gi32469473)  8e-05  Click
36 118738..118750  attR    GTTCAAGTTCAAC  N/A  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(115729..116013)  PHAGE_Lister_LP_030_2: integrase; BBIF_0110; phage(gi514051961)  8e-05  Click
2 116055..116444  hypothetical protein; BBIF_0111  N/A  Click
3 116607..116726  hypothetical protein; BBIF_0112  N/A  Click
4 116729..117523  PHAGE_Lactoc_bIL309: lysin; BBIF_0113; phage(gi13095861)  4e-16  Click
5 117534..117818  hypothetical protein; BBIF_0114  N/A  Click
6 complement(117974..118171)  PHAGE_Tsukam_TPA2: putative regulator; BBIF_0115; phage(gi326425066)  2e-12  Click
7 complement(118168..118317)  hypothetical protein; BBIF_0116  N/A  Click
8 complement(118382..118501)  hypothetical protein; BBIF_0117  N/A  Click
9 complement(119009..119374)  protein of unknown function DUF307; BBIF_0118  N/A  Click
10 119638..119748  hypothetical protein; BBIF_0119  N/A  Click
11 119979..122030  PHAGE_Lactob_KC5a: putative minor tail protein; BBIF_0120; phage(gi90592623)  6e-07  Click
12 complement(122451..122705)  PROPHAGE_Xantho_306: transposase; BBIF_0121; phage(gi21243165)  6e-18  Click
13 122780..123064  PROPHAGE_Escher_CFT073: transposase/IS protein; BBIF_0122; phage(gi26248359)  3e-08  Click
14 complement(123512..123832)  hypothetical protein; BBIF_0123  N/A  Click
15 123851..124210  PHAGE_Plankt_PaV_LD: ABC transporter; BBIF_0124; phage(gi371496158)  4e-06  Click
16 complement(124312..124719)  hypothetical protein; BBIF_0125  N/A  Click
17 125056..127509  glycogen/starch/alpha-glucan phosphorylase; BBIF_0126  N/A  Click
18 complement(128315..128536)  hypothetical protein; BBIF_0127  N/A  Click
19 128723..129508  PROPHAGE_Escher_MG1655: rhomboid intramembrane serine protease; BBIF_0128; phage(gi49176353)  2e-08  Click
20 129505..130242  PROPHAGE_Escher_MG1655: IS150 transposase B; BBIF_0129; phage(gi16131429)  5e-09  Click
Region 3, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 474724..474738  attL    CGGTGCTGTCGGTGA  N/A  Click
2 478871..479476  PHAGE_Staphy_JD007: tail lysin; BBIF_0405; phage(gi428783012)  4e-09  Click
3 479520..479807  PHAGE_Lactob_phiAT3: putative transposase A; BBIF_0406; phage(gi48697273)  2e-06  Click
4 480040..480804  PROPHAGE_Escher_CFT073: transposase; BBIF_0407; phage(gi26246249)  2e-33  Click
5 480801..481397  PROPHAGE_Escher_CFT073: transposase; BBIF_0408; phage(gi26246249)  3e-28  Click
6 481421..482119  PROPHAGE_Escher_MG1655: IS3 transposase B; BBIF_0409; phage(gi16128284)  5e-21  Click
7 complement(482253..482480)  hypothetical protein; BBIF_0410  N/A  Click
8 complement(482887..483900)  Transcriptional regulator containing cell envelope-related transcriptional attenuator domain; BBIF_0411  N/A  Click
9 complement(483849..484235)  hypothetical protein; BBIF_0412  N/A  Click
10 484607..486190  PHAGE_Lactob_LF1: tail fiber; BBIF_0413; phage(gi418489400)  1e-06  Click
11 498416..498430  attR    CGGTGCTGTCGGTGA  N/A  Click