Definition Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome.
Accession NC_014215
Length 2,616,384
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1824176..1824188  attL    CGCCGACGACGCC  N/A  Click
2 complement(1824308..1825216)  PROPHAGE_Escher_MG1655: IS3 transposase B; PFREUD_24770; phage(gi16128284)  9e-37  Click
3 complement(1825213..1825518)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; PFREUD_24780; phage(gi24373865)  3e-14  Click
4 1825912..1825924  attR    CGCCGACGACGCC  N/A  Click
5 1826611..1828143  alkylglycerone-phosphate synthase (FAD linked oxidase-like protein); PFREUD_16670  N/A  Click
6 1828232..1828891  Transcriptional regulator (Glycerol uptake operon antiterminator regulatory protein); PFREUD_16680  N/A  Click
7 1828864..1829124  hypothetical protein; PFREUD_16690  N/A  Click
8 complement(1829229..1830338)  PHAGE_Burkho_Bcep22: Bcep22gp32; PFREUD_24790; phage(gi38640338)  1e-10  Click
9 1830378..1830836  hypothetical protein; PFREUD_16700  N/A  Click
10 1830990..1832705  d-lactate dehydrogenase; PFREUD_16710  N/A  Click
11 1832884..1832895  attL    CGCCTCACGCCG  N/A  Click
12 1833079..1833699  PHAGE_Human__2: BPLF1; PFREUD_24800; phage(gi139424484)  3e-06  Click
13 complement(1833845..1834141)  PROPHAGE_Escher_EDL933: transposase for IS629; PFREUD_24820; phage(gi15801145)  8e-20  Click
14 complement(1834164..1835363)  PHAGE_Spirop_R8A2B: putative transposase; PFREUD_24830; phage(gi9626114)  3e-10  Click
15 complement(1835305..1836327)  PHAGE_Entero_4795: putative transposase OrfB protein of IS629; PFREUD_24840; phage(gi157166067)  1e-28  Click
16 complement(1836327..1836638)  PROPHAGE_Escher_Sakai: putative transposase; PFREUD_24850; phage(gi15832212)  4e-12  Click
17 1836899..1837945  hypothetical protein; PFREUD_16720  N/A  Click
18 complement(1837949..1838383)  Excisionase; PFREUD_16730  N/A  Click
19 complement(1838663..1838884)  hypothetical protein; PFREUD_16740  N/A  Click
20 1838930..1839829  PHAGE_Burkho_Bcep22: Bcep22gp32; PFREUD_24860; phage(gi38640338)  1e-10  Click
21 1839826..1839870  hypothetical protein; PFREUD_16750  N/A  Click
22 complement(1839962..1840657)  Protein-disulfide isomerase (DSBA oxidoreductase); PFREUD_16760  N/A  Click
23 complement(1840657..1840860)  hypothetical protein; PFREUD_16770  N/A  Click
24 complement(1841064..1842302)  PHAGE_Burkho_phi1026b: gp59; PFREUD_16780; phage(gi38707949)  4e-06  Click
25 1851505..1851516  attR    CGCCTCACGCCG  N/A  Click
Region 2, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1965766..1967073)  PHAGE_Ralsto_phiRSA1: transposase IRSO15-like; PFREUD_24870; phage(gi145708108)  4e-05  Click
2 complement(1967040..1967114)  hypothetical protein; PFREUD_18240  N/A  Click
3 1967288..1968241  PHAGE_Prochl_P_HM2: hypothetical protein; PFREUD_18250; phage(gi326783078)  2e-06  Click
4 1968260..1968853  PHAGE_Prochl_P_HM2: virion structural protein; PFREUD_18260; phage(gi326783141)  8e-07  Click
5 1969294..1970259  PHAGE_Burkho_Bcep22: Bcep22gp32; PFREUD_24880; phage(gi38640338)  1e-10  Click
6 complement(1970570..1971952)  PHAGE_Prochl_Syn1: virion structural protein; PFREUD_18270; phage(gi326784144)  3e-05  Click
7 complement(1971885..1972100)  hypothetical protein; PFREUD_18280  N/A  Click
8 complement(1972601..1974232)  PHAGE_Prochl_P_HM1: hypothetical protein; PFREUD_18290; phage(gi326782128)  9e-10  Click
9 complement(1974830..1975390)  PHAGE_Pseudo_Lu11: putative NUDIX hydrolase protein; PFREUD_18300; phage(gi388684964)  1e-05  Click