gi|297625198|ref|NC_014215.1|  Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, [asmbl_id: NC_014215].2616384, gc%: 67.27%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1824176..1824188                   attL                                                                                 N/A                 CGCCGACGACGCC
complement(1824308..1825216)       PROPHAGE_Escher_MG1655: IS3 transposase B; PFREUD_24770; phage(gi16128284)           9e-37               MSEKYTLMQAEKARYPIARMARLLKVSTSGYYAWVAAQQRDGDHLLPSLRARRRLDEAVRRIWVDSRSTYGYLRVCAQLRREGVVVDRKTVAASMRRQGLAGISPRRFRPVTTIPGTRTHSIPDRVKRHWDTGQVDRVWVTDITYLRTRAGWVYLCAIKDACYRKVIATAMSTTMTTDLVEEALRRARILRPNAPRKVIIHSDRGTQFTSEQMYECCRELHLDQSMGRTGVCWDNAMIESQWSVLKAEFYDRYEWDTPQQAIQGVEEWIYDFYNTKRLNSAIGYQTPVEFEAQHAAALTRAA
complement(1825213..1825518)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; PFREUD_24780; phage(gi24373865)      3e-14               MSTGNEKTRRQRRKFTAQYRHEAARMVIDSGRTIAEVAQELGLGPQLLGRWVKAEKETMTPSTLSPDEREELKRLRKENADLRMDNEFLGKAAAFFAAKHQ
1825912..1825924                   attR                                                                                 N/A                 CGCCGACGACGCC
1826611..1828143                   alkylglycerone-phosphate synthase (FAD linked oxidase-like protein); PFREUD_16670     N/A                 MISKQFQVTGYSEGYYKVGEFTPPRWVDDGLAKPITGATPRYGDGRVVAVPEGIVEQLRGIGDAVYTGTDETAERTRDWWPGTMLAHTDGDPATPDAVIVEASGVKQVQAVLRLAAANGIPVTVAAGRSNVTGSTLPLEGGIVLDIHTMNSILGFNPTDLTAECEPGVFGDVLEERLQTAWGVTTGHWPQSLGLSTVGGWVACRGAGQLSTRYGKVEDMVTELDVVLPSGELVTLGGRQRAAVGPDLKQLFIGSEGMLGVITRVVLRTHALPDYARYAAYEYDTFEAGLDACRRIMQRGVTPAALRLWDNMEGDYYFGNGGNTLLLILDEGDPRLVDVTVDIASDEAATTGTAVDAEPIFQKWLATRFEVPAQNAFEDDGAWMADTLEMTAGWSQLPRIYQRVQSEVGALEGTFVVSAHQSHAYTDAACVYFTIQGTLPIKDRAAWYRAVWDVADKVIIEEHGQLSHHHGVGVVRTPYVAESLGGGMEVLRAVKQALDPGRMLNPGKYGL
1828232..1828891                   Transcriptional regulator (Glycerol uptake operon antiterminator regulatory protein); PFREUD_16680     N/A                 MSDREAPHDERSATLPNALIHRLMAVPAGRSLMTRLAHSPVIPAVSGVDALEGFLDSPTESCLLGGLSVIALQRALTQLIAADIHPLVNLDSLSGLSRDRAGLDWLQAMGVTGLVTTRLSLLQSAPHYGFLAIQTLVLGGASLVDSALSALESAHAGLALVAPAPVLGRLDPAALPKLQPFLASGFVRNVDDVDDALAHGAIGVTSSARGLWGYERERS
1828864..1829124                   hypothetical protein; PFREUD_16690                                                   N/A                 MGLRARTQLNATRLNAARRRGTHQQLQRVDIELLGQGLDAVEGEIALAALQPAQVSRRDAQELREALLCEPPTLTLGTKVRTEPLF
complement(1829229..1830338)       PHAGE_Burkho_Bcep22: Bcep22gp32; PFREUD_24790; phage(gi38640338)                     1e-10               MRRYRCSGCGYVWRQDTTAAAEPRAKLSRRALRWALEGIVVQHLSVARVAEGLAVAWDTANDAVLAEGKRVLIDEEHRFEGVKVVGVDEHVWRHTRRGDRYVTVIIDLTPVRDGTGPARLLDMVEGRSKQAFKTWLADRPQEWRDGVEVVAMDGFTGFKTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGRKGDPLYAARRTLSTGADLLNDKQKDRLDTLFADDAHVEVEVTWSVYQRMIAAYRHENRRHGRELMARLIDSISTGVPKALVEITKLGRTLKKRAADVLAYFDRPSTSNGPTEAINGRLEHLRGSALGFRNLTNYIARSLLETGGFRPDYTLDSDEPLKGLIQRVWG
1830378..1830836                   hypothetical protein; PFREUD_16700                                                   N/A                 MGKPSDHGVTWSPFAAAAPAPLVGLDHLAGQYGTIRLESLPGDNEAEFVEAAEGSQVGAGERISAPADGSVVHVEVFRAECVGALILGRPRPLSGHRRAGPPRDVRYTLIWEEPPNLPESESTAVRNYLMRIFYNEDARMHMHTHTHTPWTP
1830990..1832705                   d-lactate dehydrogenase; PFREUD_16710                                                N/A                 MTQPGQTTTTSHEAIDAFKRIVGDEHVLTSERATMPFSKGYRFGGGPVFAVVRPGTLVEMWRALQVSVDNNLIVIPQASNTGLTGGSGPGFQDYDRPIVIISTHRIDEVHLINDAREAISLAGTPLTHLTDALAKHQREPHSVIGSTSIGASVIGGIANNSGGSQIRKGPAFTREAIFARVNDDGKVELVNHLGISLGDDPEVALDRLQRGEWSPEDVTPAPEDSNETEYAEHLRKIVPSPARYNANPEYLFEASGSAGKLMVFAVRTRTFPREVHPTVFYIGTNNTHELEEIRRLFLEADMPLPISGEYMGRSAFDLAEKYGKDTFVFLKFMSPALQTRMFSFKTWANGLFSKIPGIGPTFADTVSQAMFSVLPNQLPKRMMEYRNRFEHHLLLTVSESQKAASEKMLKEFFAEPEHTGEFFICTSDEEKSASLNRFGAASAATRYAALKRRHIAGLIPIDVALRRDDWNWLEVLPEEIDDQLEVKAYYGHFFCHVMHQDYVAKQGVDPEALHDRIQHLLEERGAKLPAEHNYGRIYKLPESMEEHFKELDPTNTFNAGIGGTSPHKDWA
1832884..1832895                   attL                                                                                 N/A                 CGCCTCACGCCG
1833079..1833699                   PHAGE_Human__2: BPLF1; PFREUD_24800; phage(gi139424484)                              3e-06               MSKARLIVLAVTQRQQTQAEVARRYRVSWRWVHELIRRYEQGGWDAIEPRSRRPRSNSAATAEPVRARILALRRVLTDSGLDAGPVTIAWHLEHEHPRAPSTSTIRRILHKADLITPEPKKRPKSSIHRFEADQPNETWQSDFPPQAGGAPTTGRWPTAATSRSSTGSTTTPGYCSPPPPTAASPPHLSWTASPRTSPPTGHQPPP
complement(1833845..1834141)       PROPHAGE_Escher_EDL933: transposase for IS629; PFREUD_24820; phage(gi15801145)       8e-20               MLTDHLALEQIAPSIGSIGDAYDNALMETINGVYKAECVRTTIFHDGPYKTIADVEFATAGWVDWYNHRRLHGSLGMVSPDEFEAAYYAALNPEPLPA
complement(1834164..1835363)       PHAGE_Spirop_R8A2B: putative transposase; PFREUD_24830; phage(gi9626114)             3e-10               MPPISLAEPSGRYLSFEEREEIAILNAKGVGVRAIARQLGRDAGTISRELRRNAATRSGRIEYRATVAQWKAQEAAKRPKIAKLVRNERLRDYVQDRLAGGVTHPDGTPVAGPAAPAWKGLNKPRRQDRRWASSWSPEQISHRLRLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALREPRERSRNKPQGHVSAEVVISQRPAEAQDRAVPGHWEGDLIIGTGRSAIGTLVERRSRTTILVHLPRLEGWGEQPPVKKGPSLGGYGAQAMNKALSASITSLPQQVRQTITWDRGKELSGHAQFTLETGTRVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSANDLEAVAHTLNNRPRKVLGWRTPAEVFDEQLRSLEQAGVATTG
complement(1835305..1836327)       PHAGE_Entero_4795: putative transposase OrfB protein of IS629; PFREUD_24840; phage(gi157166067)     1e-28               MMGFIDQMRSEGFAVESIIRVLREQGVKIAARTYRAWKRGRVAVRTVTDAIVVDAVRDAAWRDETLPGGSTRRKMTPEGLYGRKKMTAFIRRTTLRDVSRGAVDRAMRALGLSGVTRAKAIRTTIPAKDGVRAGDLLNRDFTAPRPDHTWVTDFTYVRTWAGWVYVAFILDVFSQRIVAWHAQTSKHTDLVMIPLRMALWRRDRDGHPVGPGQLRHHSDAGSQGGFNWSSQHLDVEGVGDGSERQGPEHEGRATGVAAPVACRSSVAPTDAFPWAPTPVTFAASRTAVLAPDRHGRHNGGSLPRGRRVVPRRCALVSTRWRHATDQPGRAVRALSQFRRT
complement(1836327..1836638)       PROPHAGE_Escher_Sakai: putative transposase; PFREUD_24850; phage(gi15832212)         4e-12               MPKKIDPALRERAVRLVLEHRSEYPSNAKVIAAVARQECVGAESLRRWVIQAEIDAGDRGGQTSEEHAEIRRLKAENRALREDVAILKAATAFFVGELDPRNR
1836899..1837945                   hypothetical protein; PFREUD_16720                                                   N/A                 MGALMTSGATVREVRPTIKVLKTLPRETFGDTTVLDLIANSAFERLELFGLDHPLLDDARKRFEHGMPDRHVAASKAFGAPVFEVRDRTGAAWRGAVILDEQGDPWLVWAGQHNHFHNQVATLAFDSLLPSPAEYKIRAREEVSARALAWKSDVLGRFVSALQECVRSGGEHTVTMPGISEGTRVSFTVTAEHDEPASDAHEAQHRDSLLTVTLRLGQSASSELHQAVQTVCLPFLEPDPSKVEPWYDQNNTFNAMVSITQARLVQLMADMPEYKEGAPRDVAAATHLHYVGTTFLVDGFVNSIPVRGVCGAWFIPSRSDASGLPICPQCEDEKPAAQAVLDLLRRQG
complement(1837949..1838383)       Excisionase; PFREUD_16730                                                            N/A                 MPDTLHAAAVEPHDLEQIASFAEQLPQGSPVSVVLQHLVMSLSQGKDVTYATTQENLTPQQAAELLKMSRPHLMKLIRAGALEAEMVGTHHRIPMTEILAFIDRRERAKAEVAVAYSTTDAVRKAASDAVAQLTDEDIAALNAL
complement(1838663..1838884)       hypothetical protein; PFREUD_16740                                                   N/A                 MVDPYRDTEPINPRYLRELLEKKTTRPESSFLDTWLAARDRQAAAARTVDQLADEETGQGIPHQTRDGGANTS
1838930..1839829                   PHAGE_Burkho_Bcep22: Bcep22gp32; PFREUD_24860; phage(gi38640338)                     1e-10               MARVDSVVVVDQQAERFSLLLPVGKGCGRGDKYVTVIIDLTGVRDGTGSARLLDMIEGRSKAAFKTWLASRDEAWREQVEVVAMDGFTGFKTAVVEEIPHVTAVMDPFHVIHLAADALDECRQRAQQDIFGRRGRAGDPLYRARRTLHTGADLLTDRQKVRLADLFADERHVAVEVTWSVYQRMIAAYRDPDRTAGKATMSALIASVARGVPAGLAEVARLGRTLNKRAADVLAYFDRPGTSNGPTEAINGRLEHLRGIALACATSPTRSPAASSRPAASSSNYTVDWEEPPYPVVAAT
1839826..1839870                   hypothetical protein; PFREUD_16750                                                   N/A                 MSQLPTTAKKKPRE
complement(1839962..1840657)       Protein-disulfide isomerase (DSBA oxidoreductase); PFREUD_16760                      N/A                 MTTQLFDHADDRIAVDVWSDVMCPFCYLGDGLLGKALEDFPQADQVDIRYHSFLLMPDLPEGVTRDLSDVLENERGYPREQTEAMNARITEQGAGIGLDYHFDDALATNMRRAHELSHFAKDAGKQHAMVQRLFRAYFTEGLDLGDVDVLADLAGDVGLDRDAAVAALQAGTYADDVETDIAQAQQLGISGVPFFVFNGKYAVSGAQPAEAFSQVLNTVWKESTEAAPAGE
complement(1840657..1840860)       hypothetical protein; PFREUD_16770                                                   N/A                 MESRTTRSTPDVGSRAAEDPKVPDTAVDGDATRALPTTLAAPTGLAAFTMLPSQDAGGVCDIDGTCH
complement(1841064..1842302)       PHAGE_Burkho_phi1026b: gp59; PFREUD_16780; phage(gi38707949)                         4e-06               MSVRTRTRQAATADSAQAGYAPGSREYRRVVVALTCAGLATFAQLYSPQGILPLISARLHVTAAHSALLISAATIGLAAGALPWAWLGDRIGRLTAMKSAMAAATLCGALGLLMPGFGAVLALRVAEGFALGGVPVLAIAYLGDQVSPAFTARAAAVYVSGTSIGGLAGRLVAAPIAEWFGWRIGMASVLGFAAVATAVFMVIAPAVRTPGRPEGKGHGTRRAALRALLEPGLLALYAVGFLLMGGFVAVYNYLAFRLRAAPFGLPTTVTSLLFLAYLAGTVSSQRAGRLAGRRGRLGVLLGAIAVFILGVGLTLVPALPVIVVGLVVLTAGFFAAHAIASGWAGVRAPAGGAQAPALYNVAYYAGSSVMGWFGGIVFVGMGWVGLVGLVAVLAAAAAGLAVSTLRGAETVG
1851505..1851516                   attR                                                                                 N/A                 CGCCTCACGCCG

#### region 2 ####
complement(1965766..1967073)       PHAGE_Ralsto_phiRSA1: transposase IRSO15-like; PFREUD_24870; phage(gi145708108)      4e-05               MSHPTFTTPCLTTFCGLDELGLEAVGQRLDPDRAVIECRVVEPDRWCRECGCEGAPRDTVIRRLAHEPFGHRPTTLLIRVRRYKCCGCGRVWRQDTTAAAPVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVREKTGPARLLDMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPLYQARRTLLTGAGLLTDKQQARLDALFAEDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRLEHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS
complement(1967040..1967114)       hypothetical protein; PFREUD_18240                                                   N/A                 MEVLTLAICRKTSTCHTLLSLHLA
1967288..1968241                   PHAGE_Prochl_P_HM2: hypothetical protein; PFREUD_18250; phage(gi326783078)           2e-06               MLTRKRVVAAGAAATLSLTAFAGLQPASAATGPHGGACTDAESANSITVVVDNHDGTPIQQRCAVDVGTVNSSKLLPAAGYTQNEWRPLEAGPTTINDYPKSSDLFKGWRYFTVDGASGAWKLVDTRVGLGFIDVTPGQTVAFSYTNGYFNQAGPSKTANELNPGPVLSNLKVAVAGASATASFVADDATDTAQWQLDGAKEWNDGPEIKDDKTASWSLGEGLTAGNHTVTVKLTNKAGKSAQFSQSFTIQAAAELITAQPQPVTAAPGTDATFTVKTIDGGAGLTFQWQKQDAEGKWQNVEGATSATLVVPKVTAE
1968260..1968853                   PHAGE_Prochl_P_HM2: virion structural protein; PFREUD_18260; phage(gi326783141)      8e-07               MVVTDKNKGQETSKTAILTVAEAAELITAQPKSVTVQEGSPASFTVTAAGDNLTYQWQAKGNDGTWQDVAGATKATLSVSQATKELNGSQYQVVVKSGDKSETSSVVTLTVTDKAVTQFFADVPLNNQFFTEINWMGTSGYSTGWVQADGSRLYMPLDGIHRDAFAALMYRISGDTGYQAPAVSPFRDITGSSRSGV
1969294..1970259                   PHAGE_Burkho_Bcep22: Bcep22gp32; PFREUD_24880; phage(gi38640338)                     1e-10               MAGIVVQHLTVARVAEGLGVSWDCANTSVLEEGRRVLINDEHRFEGVTTIGVDEHVWRHTRRGDKFVTVIIDLTPLREGRGPARLLDMVEGRSKKAFKEWLSQQDPAWRDRIEVVAMDGFTGFKTAAKEELPDAVEVMDPFHVVQLAGDALDHCRQRVQQDTTGHRGRSGDPLYGVRKTLHTGMDLLTEKQRTRLEGVFAQDAHVGVEATWGIYQKIVAAYRDPDPKAGRAQLAHVIEVISRGVPAALAEIITLGRTLKRRATDVLAYFERPHTSNGPTEALNGRLEHLRGSALGFRNLTNYIARSLLEAGGFRPQLHPQS
complement(1970570..1971952)       PHAGE_Prochl_Syn1: virion structural protein; PFREUD_18270; phage(gi326784144)       3e-05               MGQGALQVLYRAGFNPSSTGGTDAPTSINGFPHGAQTGYTWLHYTGIAGANWTQSDISNSTHAPVEGWSYVKTGEQKAPGIGPTFSDVTPPAVTDVTVADVKAGSTSTTASFKTDDPQSRGIWKLDDNGAWFDLPFISGPDNLRTWTIKDLTPGVHTLYIRIWDLANNNTNTWESHDGTQFKVFGAPTITQQPFSPTTSVGQDASFTAKATGYPDPTYQWQRMDGQGHWVNVDGGDQATLTVTNATMAMDQGKYRVQATNDYGTADSDVVTLYVWAHPQSQYFVDVPGDNMYYTQINWMGTSGYATGWQVAGGHEYRPLESIHRDAFAAFMYRLAGSPDYTAPTTSPFSDMAPSDEYYKEICWLQSKGIATGYDDGTFRPLDDVNRDAMAAFLYRFNASPDFTAPTTSPFRDVTTGQQFYKEMAWLSDKGISTGWPDGTYRPVTPVARDAMAAFIYRMKN
complement(1971885..1972100)       hypothetical protein; PFREUD_18280                                                   N/A                 MATAAAATLVISSLGVTASAGADTVKGHDGPCTTYELSNGAVPVAFDQQDGSGRAAGALPCRVQSVIHRGH
complement(1972601..1974232)       PHAGE_Prochl_P_HM1: hypothetical protein; PFREUD_18290; phage(gi326782128)           9e-10               MAPANAKEVASTHEGYCTSADAPGSKSVVVDFTSVDKAKGIQTKCAVNLSGKDDVTRDVSQLLTDAGFSADTTAFPATTVQGLPAKAVDGEGWLAFTGEPGTKEWSQLKAAPASVTASVLGLVYGDNTGSGPAKGPAVDLSTWKTAAPVVVAGSLDKSVPRGSTAVGLDFSVTAQSSATSTDQPTKVEYKLDNGDEEGTWTAVPKAGVWDGTSAWTYKWSQANAASGIYTATYRVTNADGLVTTSKPTEQAVVAGPVAIAQQPTDVTAAPGGNAVFTVKTTGTGVDGAAVAYQWQSQDKVTGEWADVTGATKSSYTVRQVTEDQDGTLYRVVVTGADSQGKEASLYSSSAKLTVAEVPVATATFVDVPKGNEFFKEIEWLAGEGISTGWVLPDGTKEYRPLDSIHRDAMAAFMYRLAGSPAYTAPATSPFSDVATSNQFYKEISWLASTGITTGYGDGTFRPLDNVNRDAMAAFMYRFKGNPAYTAPATSPFNDVATSQQFYKEMAWLSDEGISTGWEDGTYRPVTPVARYAMAAFIYRLQGN
complement(1974830..1975390)       PHAGE_Pseudo_Lu11: putative NUDIX hydrolase protein; PFREUD_18300; phage(gi388684964)     1e-05               MALEDEHPRSFVTVPAEQRPIRHRTASRVLVIADDKVLLEEDSDPGKPGVVWWVTPGGGVGPGETYEQAAVRELQEETGLVITEKDLEGPIGDRTVRHGYSDQVLIQHEQFYIVRTEPFRTSSSGYTEEEKITLQATRWFTREELATVTVWPKQLVQLWKYRPGIYFDMGVVEESTVPLTDAQRSQ