Definition | Lactobacillus plantarum JDM1, complete genome. |
---|---|
Accession | NC_012984 |
Length | 3,197,759 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 28 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 38452..38652 | PHAGE_Lactoc_bIL312: Csp; JDM1_0028; phage(gi13095918) | 2e-23 | Click |
2 | 38744..38974 | hypothetical protein; JDM1_0029 | N/A | Click |
3 | 39143..39159 | attL TGATGGGCAGTCAGGGG | N/A | Click |
4 | complement(39443..40597) | PROPHAGE_Oceano_HTE831: integrase; JDM1_0030; phage(gi23097608) | 3e-71 | Click |
5 | complement(40676..41320) | hypothetical protein; JDM1_0031 | N/A | Click |
6 | 41511..41648 | PHAGE_Lactob_Sha1: prophage Lp3 protein 4-like protein; JDM1_0032; phage(gi418489838) | 3e-17 | Click |
7 | 41691..41798 | prophage Lp3 protein 5; JDM1_0033 | N/A | Click |
8 | 41916..42146 | hypothetical protein; JDM1_0034 | N/A | Click |
9 | 42160..42960 | PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; JDM1_0035; phage(gi13095885) | 4e-15 | Click |
10 | 42960..44354 | PHAGE_Staphy_2638A: ORF003; JDM1_0036; phage(gi66395453) | 2e-72 | Click |
11 | 44498..44917 | prophage Lp4 protein 12; JDM1_0037 | N/A | Click |
12 | 44942..45124 | hypothetical protein; JDM1_0038 | N/A | Click |
13 | 45134..45472 | PHAGE_Lactob_Sha1: phage head-tail adaptor; JDM1_0039; phage(gi418489808) | 2e-09 | Click |
14 | 45465..45854 | PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; JDM1_0040; phage(gi9635713) | 3e-20 | Click |
15 | complement(46663..47661) | PHAGE_Staphy_phiPV83: transposase; JDM1_0041; phage(gi9635740) | 8e-55 | Click |
16 | 47806..48279 | PHAGE_Entero_EFRM31: terminase small subunit; JDM1_0042; phage(gi327198110) | 2e-13 | Click |
17 | 48276..48683 | PHAGE_Entero_EFRM31: terminase large subunit; JDM1_0043; phage(gi327198111) | 4e-23 | Click |
18 | 48706..49980 | PHAGE_Lactob_LF1: bacteriophage terminase large subunit; JDM1_0044; phage(gi418489385) | 4e-85 | Click |
19 | 50135..51235 | PHAGE_Entero_EFRM31: portal protein; JDM1_0045; phage(gi327198113) | 9e-45 | Click |
20 | 51232..52773 | PHAGE_Entero_EFRM31: major capsid protein; JDM1_0046; phage(gi327198115) | 3e-40 | Click |
21 | complement(53042..53113) | tRNA | N/A | Click |
22 | 53182..53448 | PHAGE_Entero_EFRM31: head-tail joining protein; JDM1_0047; phage(gi327198117) | 2e-06 | Click |
23 | 53592..53960 | prophage Lp3 protein 20; JDM1_0048 | N/A | Click |
24 | 54083..54283 | PHAGE_Lactoc_bIL312: Csp; JDM1_0049; phage(gi13095918) | 1e-22 | Click |
25 | 54370..54600 | hypothetical protein; JDM1_0050 | N/A | Click |
26 | complement(54804..54879) | tRNA | N/A | Click |
27 | 54804..54820 | attR TGATGGGCAGTCAGGGG | N/A | Click |
28 | 55203..55910 | PHAGE_Feldma_virus: putative sensor histidine kinase; JDM1_0051; phage(gi197322366) | 2e-11 | Click |
29 | 55924..57798 | PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; sensor; phage protein; JDM1_0052(gi197322490) | 2e-21 | Click |
30 | 57779..59104 | hypothetical protein; JDM1_0053 | N/A | Click |
31 | 59116..59970 | hypothetical protein; JDM1_0054 | N/A | Click |
32 | 60329..61144 | PHAGE_Lister_B054: gp51; JDM1_0055; phage(gi157325335) | 1e-15 | Click |
Region 2, total : 52 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 513507..513522 | attL AATCTTCTTGGCCGCA | N/A | Click |
2 | complement(513673..514830) | PHAGE_Lactob_Lj965: putative integrase; JDM1_0470; phage(gi41179218) | 2e-45 | Click |
3 | complement(515000..515668) | PHAGE_Sulfit_pCB2047_A: hypothetical protein; JDM1_0471; phage(gi472341905) | 3e-05 | Click |
4 | complement(515781..516212) | nucleotide-binding protein, UspA family; JDM1_0472 | N/A | Click |
5 | complement(516895..516984) | tRNA | N/A | Click |
6 | complement(517037..517705) | hypothetical protein; JDM1_0473 | N/A | Click |
7 | complement(517797..518228) | PHAGE_Lactob_phig1e: hypothetical protein phig1ep06; JDM1_0474; phage(gi23455774) | 2e-31 | Click |
8 | complement(518238..518615) | PHAGE_Lactob_phig1e: repressor; JDM1_0475; phage(gi23455773) | 3e-23 | Click |
9 | 518928..519137 | PHAGE_Lactob_phiadh: hypothetical protein phiadhp12; JDM1_0476; phage(gi9633012) | 8e-09 | Click |
10 | 519141..519356 | hypothetical protein; JDM1_0477 | N/A | Click |
11 | 519607..519879 | hypothetical protein; JDM1_0478 | N/A | Click |
12 | 520018..520467 | PHAGE_Lister_B025: gp52; JDM1_0479; phage(gi157325269) | 3e-39 | Click |
13 | 520623..520808 | hypothetical protein; JDM1_0480 | N/A | Click |
14 | 520885..520950 | hypothetical protein; JDM1_0481 | N/A | Click |
15 | 521271..521522 | hypothetical protein; JDM1_0482 | N/A | Click |
16 | 521519..521998 | PHAGE_Staphy_92: ORF029; JDM1_0483; phage(gi66396435) | 7e-23 | Click |
17 | 522150..523409 | PHAGE_Strept_Sfi19: putative helicase; JDM1_0484; phage(gi9632923) | 6e-109 | Click |
18 | 523406..524122 | PHAGE_Strept_PH15: putative NTP-binding protein; JDM1_0485; phage(gi190151434) | 3e-60 | Click |
19 | 524125..524724 | PHAGE_Strept_PH15: hypothetical protein phiPH15_gp20; JDM1_0486; phage(gi190151435) | 1e-10 | Click |
20 | 524738..525292 | hypothetical protein; JDM1_0487 | N/A | Click |
21 | 525366..526160 | PHAGE_Strept_PH15: putative replication protein; JDM1_0488; phage(gi190151436) | 2e-57 | Click |
22 | 526157..527431 | PHAGE_Lactoc_bIL312: helicase; JDM1_0489; phage(gi13095906) | 3e-83 | Click |
23 | 527689..528021 | PHAGE_Pedioc_clP1: phage protein; JDM1_0490; phage(gi356870760) | 3e-37 | Click |
24 | 528041..528265 | hypothetical protein; JDM1_0491 | N/A | Click |
25 | 528291..528677 | PHAGE_Lactob_LP65: hypothetical protein LP65_gp037; JDM1_0492; phage(gi56693085) | 2e-13 | Click |
26 | 528674..529135 | PHAGE_Lactob_LP65: hypothetical protein LP65_gp009; JDM1_0493; phage(gi56693057) | 2e-14 | Click |
27 | 529262..529573 | hypothetical protein; JDM1_0494 | N/A | Click |
28 | 529585..530016 | hypothetical protein; JDM1_0495 | N/A | Click |
29 | 530195..530902 | hypothetical protein; JDM1_0496 | N/A | Click |
30 | 530971..531186 | PHAGE_Lactob_phig1e: hypothetical protein phig1ep39; JDM1_0497; phage(gi254854752) | 2e-08 | Click |
31 | 531649..531762 | hypothetical protein; JDM1_0498 | N/A | Click |
32 | 531796..532047 | hypothetical protein; JDM1_0499 | N/A | Click |
33 | 532158..532445 | PHAGE_Lister_B025: gp1; JDM1_0500; phage(gi157325218) | 9e-16 | Click |
34 | 532442..534124 | PHAGE_Lister_B025: putative terminase large subunit; JDM1_0501; phage(gi157325219) | 5e-146 | Click |
35 | 534143..535285 | PHAGE_Staphy_P954: HK97 family phage portal protein; JDM1_0502; phage(gi257136404) | 7e-95 | Click |
36 | 535272..536015 | PHAGE_Lister_B025: gp4; JDM1_0503; phage(gi157325221) | 2e-50 | Click |
37 | 536036..537214 | PHAGE_Lister_B025: Cps; JDM1_0504; phage(gi157325222) | 4e-104 | Click |
38 | 537354..537659 | PHAGE_Lister_B025: gp7; JDM1_0505; phage(gi157325224) | 1e-10 | Click |
39 | 537640..538029 | PHAGE_Lister_B025: gp8; JDM1_0506; phage(gi157325226) | 1e-20 | Click |
40 | 538026..538433 | PHAGE_Lister_B025: gp9; JDM1_0507; phage(gi157325225) | 2e-14 | Click |
41 | 538430..538852 | PHAGE_Lister_B025: gp10; JDM1_0508; phage(gi157325227) | 7e-15 | Click |
42 | 538867..539478 | PHAGE_Lister_B025: Tsh; JDM1_0509; phage(gi157325228) | 3e-19 | Click |
43 | 539571..539885 | hypothetical protein; JDM1_0510 | N/A | Click |
44 | 540072..543977 | PHAGE_Lactob_LF1: phage tail tape measure protein; JDM1_0511; phage(gi418489397) | 0.0 | Click |
45 | 544082..544615 | PHAGE_Lactob_LF1: phage tail tape measure protein; JDM1_0512; phage(gi418489397) | 2e-17 | Click |
46 | 544619..545440 | PHAGE_Entero_phiFL1A: tail protein; JDM1_0513; phage(gi281416378) | 1e-31 | Click |
47 | 545460..549428 | PHAGE_Lactob_8014_B1: prophage tail super family protein; JDM1_0514; phage(gi431809813) | 6e-76 | Click |
48 | 549455..549937 | PHAGE_Strept_3: hypothetical protein SpyM3_1099; JDM1_0515; phage(gi28876269) | 5e-10 | Click |
49 | 549939..550373 | hypothetical protein; JDM1_0516 | N/A | Click |
50 | 550403..550780 | hypothetical protein; JDM1_0517 | N/A | Click |
51 | 550780..551052 | hypothetical protein; JDM1_0518 | N/A | Click |
52 | 551052..551336 | PHAGE_Lactob_phig1e: holin; JDM1_0519; phage(gi23455817) | 7e-07 | Click |
53 | 551336..551722 | PHAGE_Lactoc_lato: putative lysin; JDM1_0520; phage(gi30089910) | 7e-24 | Click |
54 | 551805..552269 | PHAGE_Lactob_1: putative lysin; JDM1_0521; phage(gi62327117) | 7e-12 | Click |
55 | 552448..552463 | attR AATCTTCTTGGCCGCA | N/A | Click |
Region 3, total : 51 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1021445..1021645 | PHAGE_Lactoc_bIL312: Csp; JDM1_0954; phage(gi13095918) | 3e-22 | Click |
2 | 1021832..1022839 | oxidoreductase (putative); JDM1_0955 | N/A | Click |
3 | 1022852..1024186 | PHAGE_Cafete_BV_PW1: putative superfamily II helicase/eIF-4AIII; JDM1_0956; phage(gi310831360) | 1e-36 | Click |
4 | 1024234..1024306 | tRNA | N/A | Click |
5 | 1024293..1024306 | attL TCCGGGTGGGGTCA | N/A | Click |
6 | complement(1024428..1025609) | PHAGE_Bacill_BCJA1c: integrase; JDM1_0957; phage(gi56694872) | 1e-62 | Click |
7 | complement(1025777..1025866) | hypothetical protein; JDM1_0958 | N/A | Click |
8 | complement(1026143..1026235) | tRNA | N/A | Click |
9 | complement(1026425..1026625) | PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0959; phage(gi418489829) | 5e-32 | Click |
10 | complement(1026637..1027413) | hypothetical protein; JDM1_0960 | N/A | Click |
11 | complement(1027478..1027726) | PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; JDM1_0961; phage(gi418489418) | 3e-08 | Click |
12 | complement(1027898..1028224) | PHAGE_Entero_phiFL3A: CI phage repressor protein; JDM1_0962; phage(gi281416216) | 2e-18 | Click |
13 | 1028481..1028696 | hypothetical protein; JDM1_0963 | N/A | Click |
14 | 1028779..1029513 | PHAGE_Entero_phiFL3A: anti-repressor protein; JDM1_0964; phage(gi281416221) | 1e-40 | Click |
15 | 1029525..1029734 | PHAGE_Lactob_phiadh: hypothetical protein phiadhp08; JDM1_0965; phage(gi9633008) | 4e-05 | Click |
16 | 1029747..1029962 | hypothetical protein; JDM1_0967 | N/A | Click |
17 | complement(1029949..1030158) | hypothetical protein; JDM1_0966 | N/A | Click |
18 | complement(1030327..1030452) | hypothetical protein; JDM1_0968 | N/A | Click |
19 | 1030865..1031125 | hypothetical protein; JDM1_0969 | N/A | Click |
20 | 1031268..1031447 | PHAGE_Lactob_Sha1: prophage Lp3 protein 4-like protein; JDM1_0970; phage(gi418489838) | 4e-27 | Click |
21 | 1031481..1031735 | hypothetical protein; JDM1_0971 | N/A | Click |
22 | 1031738..1031938 | PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0972; phage(gi418489840) | 7e-29 | Click |
23 | 1032263..1033123 | PHAGE_Entero_phiEf11: putative replication protein; JDM1_0973; phage(gi282598768) | 9e-44 | Click |
24 | 1033123..1033749 | PHAGE_Brocho_BL3: gp45; JDM1_0974; phage(gi327409437) | 7e-20 | Click |
25 | 1033746..1034207 | PHAGE_Brocho_NF5: gp45; JDM1_0975; phage(gi327197630) | 6e-47 | Click |
26 | 1034223..1034789 | PHAGE_Staphy_88: ORF027; JDM1_0976; phage(gi66396359) | 2e-32 | Click |
27 | 1034795..1035487 | PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0977; phage(gi418489846) | 4e-123 | Click |
28 | 1035537..1036343 | PHAGE_Lactob_LF1: DNA replication protein; JDM1_0978; phage(gi418489431) | 1e-44 | Click |
29 | 1036343..1037128 | PHAGE_Lactob_Sha1: DNA replication protein; JDM1_0979; phage(gi418489789) | 6e-147 | Click |
30 | 1037264..1037572 | PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0980; phage(gi418489790) | 7e-51 | Click |
31 | 1037847..1038278 | PHAGE_Lactob_Sha1: phage transcriptional activator RinA; JDM1_0981; phage(gi418489798) | 1e-74 | Click |
32 | 1038606..1038767 | hypothetical protein; JDM1_0982 | N/A | Click |
33 | 1038789..1039448 | PHAGE_Lactob_Sha1: HNH nuclease; JDM1_0983; phage(gi418489799) | 2e-18 | Click |
34 | 1039721..1040074 | PHAGE_Lactoc_bIL309: Orf38; JDM1_0984; phage(gi13095843) | 3e-15 | Click |
35 | 1040061..1041977 | PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; JDM1_0985; phage(gi418489802) | 5e-121 | Click |
36 | 1042197..1043315 | PHAGE_Lactoc_bIL309: portal protein; JDM1_0986; phage(gi13095846) | 2e-67 | Click |
37 | 1043287..1043892 | PHAGE_Lactob_1: protease-scaffold-major head protein; JDM1_0987; phage(gi219563201) | 3e-42 | Click |
38 | 1043899..1045281 | PHAGE_Lactoc_bIL309: capsid protein; JDM1_0988; phage(gi13095848) | 2e-112 | Click |
39 | 1045372..1045650 | PHAGE_Lactoc_bIL309: Orf44; JDM1_0989; phage(gi13095849) | 4e-06 | Click |
40 | 1045930..1045998 | hypothetical protein; JDM1_0990 | N/A | Click |
41 | 1046001..1046408 | PHAGE_Strept_DT1: putative tail component protein; JDM1_0991; phage(gi9632427) | 8e-28 | Click |
42 | 1046408..1046788 | PHAGE_Lactob_phiAT3: putative tail component; JDM1_0992; phage(gi48697268) | 9e-16 | Click |
43 | 1046803..1047444 | PHAGE_Lactob_Nu: major tail protein; JDM1_0993; phage(gi78000030) | 9e-23 | Click |
44 | 1047521..1047895 | hypothetical protein; JDM1_0994 | N/A | Click |
45 | 1047940..1048125 | PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0995; phage(gi418489813) | 8e-06 | Click |
46 | 1048157..1053307 | PHAGE_Strept_DT1: putative tail component protein; JDM1_0996; phage(gi29165636) | 0.0 | Click |
47 | 1053384..1055156 | PHAGE_Lactob_Sha1: minor structural protein gp75-like protein; JDM1_0997; phage(gi418489815) | 0.0 | Click |
48 | 1055223..1057634 | PHAGE_Lactob_Sha1: minor structural protein gp89-like protein; JDM1_0998; phage(gi418489816) | 0.0 | Click |
49 | 1057651..1060446 | PHAGE_Lactob_Sha1: tail fiber; JDM1_0999; phage(gi418489817) | 0.0 | Click |
50 | 1060439..1060678 | PHAGE_Lactob_Sha1: hypothetical protein; JDM1_1000; phage(gi418489818) | 5e-35 | Click |
51 | 1060827..1061942 | PHAGE_Lactob_Sha1: prophage Lp2 protein 53-like protein; JDM1_1001; phage(gi418489820) | 1e-78 | Click |
52 | 1062209..1063366 | PHAGE_Lactob_Sha1: endolysin; JDM1_1002; phage(gi418489821) | 0.0 | Click |
53 | 1063366..1063629 | PHAGE_Lactob_Sha1: phage-related holin; JDM1_1003; phage(gi418489822) | 6e-42 | Click |
54 | 1063641..1064108 | PHAGE_Staphy_IPLA88: putative holin; JDM1_1004; phage(gi215401230) | 2e-05 | Click |
55 | 1064151..1064164 | attR TCCGGGTGGGGTCA | N/A | Click |
Region 4, total : 8 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1074721..1075896 | PHAGE_Mycoba_Tweety: gp19; JDM1_1014; phage(gi157311208) | 2e-10 | Click |
2 | 1076086..1077204 | PHAGE_Megavi_lba: UDP-N-acetylglucosamine 2-epimerase; JDM1_1015; phage(gi448825506) | 4e-30 | Click |
3 | 1077592..1078521 | integral membrane protein; JDM1_1016 | N/A | Click |
4 | 1078711..1079427 | PHAGE_Acanth_1: hypothetical protein ATCV1_Z300R; JDM1_1017; phage(gi155371247) | 2e-25 | Click |
5 | 1079679..1080872 | PHAGE_Sulfol_STSV1: group I glycosyltransferase; JDM1_1018; phage(gi51980189) | 1e-07 | Click |
6 | 1080971..1081258 | PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; JDM1_1019; phage(gi17546156) | 6e-07 | Click |
7 | 1081827..1082375 | PROPHAGE_Lactoc_Il1403: IS1077F transposase; JDM1_1020; phage(gi15674057) | 1e-32 | Click |
8 | complement(1082444..1083640) | PHAGE_Strept_phiSASD1: gp39; JDM1_1021; phage(gi298103504) | 1e-09 | Click |
Region 5, total : 7 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1094265..1095134 | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; JDM1_1032; phage(gi448260372) | 2e-100 | Click |
2 | 1094692..1094706 | attL TTGGTGTCGTTGACT | N/A | Click |
3 | 1095138..1095719 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; JDM1_1033; phage(gi448260371) | 8e-34 | Click |
4 | 1095729..1096757 | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; JDM1_1034; phage(gi448260373) | 2e-67 | Click |
5 | 1096827..1097669 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; JDM1_1035; phage(gi448260370) | 2e-30 | Click |
6 | complement(1097751..1099304) | transporter; JDM1_1036 | N/A | Click |
7 | complement(1099367..1099963) | PHAGE_Bacill_BtCS33: integrase; JDM1_1037; phage(gi392972759) | 7e-33 | Click |
8 | 1100351..1103599 | PHAGE_Roseob_SIO1: gp7; JDM1_1038; phage(gi9964615) | 7e-15 | Click |
9 | 1110371..1110385 | attR TTGGTGTCGTTGACT | N/A | Click |