Definition Lactobacillus plantarum JDM1, complete genome.
Accession NC_012984
Length 3,197,759
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 28 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 38452..38652  PHAGE_Lactoc_bIL312: Csp; JDM1_0028; phage(gi13095918)  2e-23  Click
2 38744..38974  hypothetical protein; JDM1_0029  N/A  Click
3 39143..39159  attL    TGATGGGCAGTCAGGGG  N/A  Click
4 complement(39443..40597)  PROPHAGE_Oceano_HTE831: integrase; JDM1_0030; phage(gi23097608)  3e-71  Click
5 complement(40676..41320)  hypothetical protein; JDM1_0031  N/A  Click
6 41511..41648  PHAGE_Lactob_Sha1: prophage Lp3 protein 4-like protein; JDM1_0032; phage(gi418489838)  3e-17  Click
7 41691..41798  prophage Lp3 protein 5; JDM1_0033  N/A  Click
8 41916..42146  hypothetical protein; JDM1_0034  N/A  Click
9 42160..42960  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; JDM1_0035; phage(gi13095885)  4e-15  Click
10 42960..44354  PHAGE_Staphy_2638A: ORF003; JDM1_0036; phage(gi66395453)  2e-72  Click
11 44498..44917  prophage Lp4 protein 12; JDM1_0037  N/A  Click
12 44942..45124  hypothetical protein; JDM1_0038  N/A  Click
13 45134..45472  PHAGE_Lactob_Sha1: phage head-tail adaptor; JDM1_0039; phage(gi418489808)  2e-09  Click
14 45465..45854  PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; JDM1_0040; phage(gi9635713)  3e-20  Click
15 complement(46663..47661)  PHAGE_Staphy_phiPV83: transposase; JDM1_0041; phage(gi9635740)  8e-55  Click
16 47806..48279  PHAGE_Entero_EFRM31: terminase small subunit; JDM1_0042; phage(gi327198110)  2e-13  Click
17 48276..48683  PHAGE_Entero_EFRM31: terminase large subunit; JDM1_0043; phage(gi327198111)  4e-23  Click
18 48706..49980  PHAGE_Lactob_LF1: bacteriophage terminase large subunit; JDM1_0044; phage(gi418489385)  4e-85  Click
19 50135..51235  PHAGE_Entero_EFRM31: portal protein; JDM1_0045; phage(gi327198113)  9e-45  Click
20 51232..52773  PHAGE_Entero_EFRM31: major capsid protein; JDM1_0046; phage(gi327198115)  3e-40  Click
21 complement(53042..53113)  tRNA  N/A  Click
22 53182..53448  PHAGE_Entero_EFRM31: head-tail joining protein; JDM1_0047; phage(gi327198117)  2e-06  Click
23 53592..53960  prophage Lp3 protein 20; JDM1_0048  N/A  Click
24 54083..54283  PHAGE_Lactoc_bIL312: Csp; JDM1_0049; phage(gi13095918)  1e-22  Click
25 54370..54600  hypothetical protein; JDM1_0050  N/A  Click
26 complement(54804..54879)  tRNA  N/A  Click
27 54804..54820  attR    TGATGGGCAGTCAGGGG  N/A  Click
28 55203..55910  PHAGE_Feldma_virus: putative sensor histidine kinase; JDM1_0051; phage(gi197322366)  2e-11  Click
29 55924..57798  PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; sensor; phage protein; JDM1_0052(gi197322490)  2e-21  Click
30 57779..59104  hypothetical protein; JDM1_0053  N/A  Click
31 59116..59970  hypothetical protein; JDM1_0054  N/A  Click
32 60329..61144  PHAGE_Lister_B054: gp51; JDM1_0055; phage(gi157325335)  1e-15  Click
Region 2, total : 52 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 513507..513522  attL    AATCTTCTTGGCCGCA  N/A  Click
2 complement(513673..514830)  PHAGE_Lactob_Lj965: putative integrase; JDM1_0470; phage(gi41179218)  2e-45  Click
3 complement(515000..515668)  PHAGE_Sulfit_pCB2047_A: hypothetical protein; JDM1_0471; phage(gi472341905)  3e-05  Click
4 complement(515781..516212)  nucleotide-binding protein, UspA family; JDM1_0472  N/A  Click
5 complement(516895..516984)  tRNA  N/A  Click
6 complement(517037..517705)  hypothetical protein; JDM1_0473  N/A  Click
7 complement(517797..518228)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep06; JDM1_0474; phage(gi23455774)  2e-31  Click
8 complement(518238..518615)  PHAGE_Lactob_phig1e: repressor; JDM1_0475; phage(gi23455773)  3e-23  Click
9 518928..519137  PHAGE_Lactob_phiadh: hypothetical protein phiadhp12; JDM1_0476; phage(gi9633012)  8e-09  Click
10 519141..519356  hypothetical protein; JDM1_0477  N/A  Click
11 519607..519879  hypothetical protein; JDM1_0478  N/A  Click
12 520018..520467  PHAGE_Lister_B025: gp52; JDM1_0479; phage(gi157325269)  3e-39  Click
13 520623..520808  hypothetical protein; JDM1_0480  N/A  Click
14 520885..520950  hypothetical protein; JDM1_0481  N/A  Click
15 521271..521522  hypothetical protein; JDM1_0482  N/A  Click
16 521519..521998  PHAGE_Staphy_92: ORF029; JDM1_0483; phage(gi66396435)  7e-23  Click
17 522150..523409  PHAGE_Strept_Sfi19: putative helicase; JDM1_0484; phage(gi9632923)  6e-109  Click
18 523406..524122  PHAGE_Strept_PH15: putative NTP-binding protein; JDM1_0485; phage(gi190151434)  3e-60  Click
19 524125..524724  PHAGE_Strept_PH15: hypothetical protein phiPH15_gp20; JDM1_0486; phage(gi190151435)  1e-10  Click
20 524738..525292  hypothetical protein; JDM1_0487  N/A  Click
21 525366..526160  PHAGE_Strept_PH15: putative replication protein; JDM1_0488; phage(gi190151436)  2e-57  Click
22 526157..527431  PHAGE_Lactoc_bIL312: helicase; JDM1_0489; phage(gi13095906)  3e-83  Click
23 527689..528021  PHAGE_Pedioc_clP1: phage protein; JDM1_0490; phage(gi356870760)  3e-37  Click
24 528041..528265  hypothetical protein; JDM1_0491  N/A  Click
25 528291..528677  PHAGE_Lactob_LP65: hypothetical protein LP65_gp037; JDM1_0492; phage(gi56693085)  2e-13  Click
26 528674..529135  PHAGE_Lactob_LP65: hypothetical protein LP65_gp009; JDM1_0493; phage(gi56693057)  2e-14  Click
27 529262..529573  hypothetical protein; JDM1_0494  N/A  Click
28 529585..530016  hypothetical protein; JDM1_0495  N/A  Click
29 530195..530902  hypothetical protein; JDM1_0496  N/A  Click
30 530971..531186  PHAGE_Lactob_phig1e: hypothetical protein phig1ep39; JDM1_0497; phage(gi254854752)  2e-08  Click
31 531649..531762  hypothetical protein; JDM1_0498  N/A  Click
32 531796..532047  hypothetical protein; JDM1_0499  N/A  Click
33 532158..532445  PHAGE_Lister_B025: gp1; JDM1_0500; phage(gi157325218)  9e-16  Click
34 532442..534124  PHAGE_Lister_B025: putative terminase large subunit; JDM1_0501; phage(gi157325219)  5e-146  Click
35 534143..535285  PHAGE_Staphy_P954: HK97 family phage portal protein; JDM1_0502; phage(gi257136404)  7e-95  Click
36 535272..536015  PHAGE_Lister_B025: gp4; JDM1_0503; phage(gi157325221)  2e-50  Click
37 536036..537214  PHAGE_Lister_B025: Cps; JDM1_0504; phage(gi157325222)  4e-104  Click
38 537354..537659  PHAGE_Lister_B025: gp7; JDM1_0505; phage(gi157325224)  1e-10  Click
39 537640..538029  PHAGE_Lister_B025: gp8; JDM1_0506; phage(gi157325226)  1e-20  Click
40 538026..538433  PHAGE_Lister_B025: gp9; JDM1_0507; phage(gi157325225)  2e-14  Click
41 538430..538852  PHAGE_Lister_B025: gp10; JDM1_0508; phage(gi157325227)  7e-15  Click
42 538867..539478  PHAGE_Lister_B025: Tsh; JDM1_0509; phage(gi157325228)  3e-19  Click
43 539571..539885  hypothetical protein; JDM1_0510  N/A  Click
44 540072..543977  PHAGE_Lactob_LF1: phage tail tape measure protein; JDM1_0511; phage(gi418489397)  0.0  Click
45 544082..544615  PHAGE_Lactob_LF1: phage tail tape measure protein; JDM1_0512; phage(gi418489397)  2e-17  Click
46 544619..545440  PHAGE_Entero_phiFL1A: tail protein; JDM1_0513; phage(gi281416378)  1e-31  Click
47 545460..549428  PHAGE_Lactob_8014_B1: prophage tail super family protein; JDM1_0514; phage(gi431809813)  6e-76  Click
48 549455..549937  PHAGE_Strept_3: hypothetical protein SpyM3_1099; JDM1_0515; phage(gi28876269)  5e-10  Click
49 549939..550373  hypothetical protein; JDM1_0516  N/A  Click
50 550403..550780  hypothetical protein; JDM1_0517  N/A  Click
51 550780..551052  hypothetical protein; JDM1_0518  N/A  Click
52 551052..551336  PHAGE_Lactob_phig1e: holin; JDM1_0519; phage(gi23455817)  7e-07  Click
53 551336..551722  PHAGE_Lactoc_lato: putative lysin; JDM1_0520; phage(gi30089910)  7e-24  Click
54 551805..552269  PHAGE_Lactob_1: putative lysin; JDM1_0521; phage(gi62327117)  7e-12  Click
55 552448..552463  attR    AATCTTCTTGGCCGCA  N/A  Click
Region 3, total : 51 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1021445..1021645  PHAGE_Lactoc_bIL312: Csp; JDM1_0954; phage(gi13095918)  3e-22  Click
2 1021832..1022839  oxidoreductase (putative); JDM1_0955  N/A  Click
3 1022852..1024186  PHAGE_Cafete_BV_PW1: putative superfamily II helicase/eIF-4AIII; JDM1_0956; phage(gi310831360)  1e-36  Click
4 1024234..1024306  tRNA  N/A  Click
5 1024293..1024306  attL    TCCGGGTGGGGTCA  N/A  Click
6 complement(1024428..1025609)  PHAGE_Bacill_BCJA1c: integrase; JDM1_0957; phage(gi56694872)  1e-62  Click
7 complement(1025777..1025866)  hypothetical protein; JDM1_0958  N/A  Click
8 complement(1026143..1026235)  tRNA  N/A  Click
9 complement(1026425..1026625)  PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0959; phage(gi418489829)  5e-32  Click
10 complement(1026637..1027413)  hypothetical protein; JDM1_0960  N/A  Click
11 complement(1027478..1027726)  PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; JDM1_0961; phage(gi418489418)  3e-08  Click
12 complement(1027898..1028224)  PHAGE_Entero_phiFL3A: CI phage repressor protein; JDM1_0962; phage(gi281416216)  2e-18  Click
13 1028481..1028696  hypothetical protein; JDM1_0963  N/A  Click
14 1028779..1029513  PHAGE_Entero_phiFL3A: anti-repressor protein; JDM1_0964; phage(gi281416221)  1e-40  Click
15 1029525..1029734  PHAGE_Lactob_phiadh: hypothetical protein phiadhp08; JDM1_0965; phage(gi9633008)  4e-05  Click
16 1029747..1029962  hypothetical protein; JDM1_0967  N/A  Click
17 complement(1029949..1030158)  hypothetical protein; JDM1_0966  N/A  Click
18 complement(1030327..1030452)  hypothetical protein; JDM1_0968  N/A  Click
19 1030865..1031125  hypothetical protein; JDM1_0969  N/A  Click
20 1031268..1031447  PHAGE_Lactob_Sha1: prophage Lp3 protein 4-like protein; JDM1_0970; phage(gi418489838)  4e-27  Click
21 1031481..1031735  hypothetical protein; JDM1_0971  N/A  Click
22 1031738..1031938  PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0972; phage(gi418489840)  7e-29  Click
23 1032263..1033123  PHAGE_Entero_phiEf11: putative replication protein; JDM1_0973; phage(gi282598768)  9e-44  Click
24 1033123..1033749  PHAGE_Brocho_BL3: gp45; JDM1_0974; phage(gi327409437)  7e-20  Click
25 1033746..1034207  PHAGE_Brocho_NF5: gp45; JDM1_0975; phage(gi327197630)  6e-47  Click
26 1034223..1034789  PHAGE_Staphy_88: ORF027; JDM1_0976; phage(gi66396359)  2e-32  Click
27 1034795..1035487  PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0977; phage(gi418489846)  4e-123  Click
28 1035537..1036343  PHAGE_Lactob_LF1: DNA replication protein; JDM1_0978; phage(gi418489431)  1e-44  Click
29 1036343..1037128  PHAGE_Lactob_Sha1: DNA replication protein; JDM1_0979; phage(gi418489789)  6e-147  Click
30 1037264..1037572  PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0980; phage(gi418489790)  7e-51  Click
31 1037847..1038278  PHAGE_Lactob_Sha1: phage transcriptional activator RinA; JDM1_0981; phage(gi418489798)  1e-74  Click
32 1038606..1038767  hypothetical protein; JDM1_0982  N/A  Click
33 1038789..1039448  PHAGE_Lactob_Sha1: HNH nuclease; JDM1_0983; phage(gi418489799)  2e-18  Click
34 1039721..1040074  PHAGE_Lactoc_bIL309: Orf38; JDM1_0984; phage(gi13095843)  3e-15  Click
35 1040061..1041977  PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; JDM1_0985; phage(gi418489802)  5e-121  Click
36 1042197..1043315  PHAGE_Lactoc_bIL309: portal protein; JDM1_0986; phage(gi13095846)  2e-67  Click
37 1043287..1043892  PHAGE_Lactob_1: protease-scaffold-major head protein; JDM1_0987; phage(gi219563201)  3e-42  Click
38 1043899..1045281  PHAGE_Lactoc_bIL309: capsid protein; JDM1_0988; phage(gi13095848)  2e-112  Click
39 1045372..1045650  PHAGE_Lactoc_bIL309: Orf44; JDM1_0989; phage(gi13095849)  4e-06  Click
40 1045930..1045998  hypothetical protein; JDM1_0990  N/A  Click
41 1046001..1046408  PHAGE_Strept_DT1: putative tail component protein; JDM1_0991; phage(gi9632427)  8e-28  Click
42 1046408..1046788  PHAGE_Lactob_phiAT3: putative tail component; JDM1_0992; phage(gi48697268)  9e-16  Click
43 1046803..1047444  PHAGE_Lactob_Nu: major tail protein; JDM1_0993; phage(gi78000030)  9e-23  Click
44 1047521..1047895  hypothetical protein; JDM1_0994  N/A  Click
45 1047940..1048125  PHAGE_Lactob_Sha1: hypothetical protein; JDM1_0995; phage(gi418489813)  8e-06  Click
46 1048157..1053307  PHAGE_Strept_DT1: putative tail component protein; JDM1_0996; phage(gi29165636)  0.0  Click
47 1053384..1055156  PHAGE_Lactob_Sha1: minor structural protein gp75-like protein; JDM1_0997; phage(gi418489815)  0.0  Click
48 1055223..1057634  PHAGE_Lactob_Sha1: minor structural protein gp89-like protein; JDM1_0998; phage(gi418489816)  0.0  Click
49 1057651..1060446  PHAGE_Lactob_Sha1: tail fiber; JDM1_0999; phage(gi418489817)  0.0  Click
50 1060439..1060678  PHAGE_Lactob_Sha1: hypothetical protein; JDM1_1000; phage(gi418489818)  5e-35  Click
51 1060827..1061942  PHAGE_Lactob_Sha1: prophage Lp2 protein 53-like protein; JDM1_1001; phage(gi418489820)  1e-78  Click
52 1062209..1063366  PHAGE_Lactob_Sha1: endolysin; JDM1_1002; phage(gi418489821)  0.0  Click
53 1063366..1063629  PHAGE_Lactob_Sha1: phage-related holin; JDM1_1003; phage(gi418489822)  6e-42  Click
54 1063641..1064108  PHAGE_Staphy_IPLA88: putative holin; JDM1_1004; phage(gi215401230)  2e-05  Click
55 1064151..1064164  attR    TCCGGGTGGGGTCA  N/A  Click
Region 4, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1074721..1075896  PHAGE_Mycoba_Tweety: gp19; JDM1_1014; phage(gi157311208)  2e-10  Click
2 1076086..1077204  PHAGE_Megavi_lba: UDP-N-acetylglucosamine 2-epimerase; JDM1_1015; phage(gi448825506)  4e-30  Click
3 1077592..1078521  integral membrane protein; JDM1_1016  N/A  Click
4 1078711..1079427  PHAGE_Acanth_1: hypothetical protein ATCV1_Z300R; JDM1_1017; phage(gi155371247)  2e-25  Click
5 1079679..1080872  PHAGE_Sulfol_STSV1: group I glycosyltransferase; JDM1_1018; phage(gi51980189)  1e-07  Click
6 1080971..1081258  PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; JDM1_1019; phage(gi17546156)  6e-07  Click
7 1081827..1082375  PROPHAGE_Lactoc_Il1403: IS1077F transposase; JDM1_1020; phage(gi15674057)  1e-32  Click
8 complement(1082444..1083640)  PHAGE_Strept_phiSASD1: gp39; JDM1_1021; phage(gi298103504)  1e-09  Click
Region 5, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1094265..1095134  PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; JDM1_1032; phage(gi448260372)  2e-100  Click
2 1094692..1094706  attL    TTGGTGTCGTTGACT  N/A  Click
3 1095138..1095719  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; JDM1_1033; phage(gi448260371)  8e-34  Click
4 1095729..1096757  PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; JDM1_1034; phage(gi448260373)  2e-67  Click
5 1096827..1097669  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; JDM1_1035; phage(gi448260370)  2e-30  Click
6 complement(1097751..1099304)  transporter; JDM1_1036  N/A  Click
7 complement(1099367..1099963)  PHAGE_Bacill_BtCS33: integrase; JDM1_1037; phage(gi392972759)  7e-33  Click
8 1100351..1103599  PHAGE_Roseob_SIO1: gp7; JDM1_1038; phage(gi9964615)  7e-15  Click
9 1110371..1110385  attR    TTGGTGTCGTTGACT  N/A  Click