Definition Helicobacter pylori B38, complete genome.
Accession NC_012973
Length 1,576,758
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 533436..533449  attL    CTTTAAGGGCTTTT  N/A  Click
2 547579..548934  PHAGE_Glossi_virus: hypothetical protein SGHV062; HELPY_0565; phage(gi168804078)  9e-05  Click
3 548952..549542  PHAGE_Entero_mEp213: head maturation protease; HELPY_0566; phage(gi428782594)  4e-12  Click
4 549547..550071  PHAGE_Caulob_CcrColossus: putative peptide formylmethionine deformylase; HELPY_0567; phage(gi414088160)  2e-20  Click
5 550077..551597  PROPHAGE_Escher_Sakai: putative ATP-dependent protease; putative; phage ComM protein; HELPY_0568(gi15833954)  5e-76  Click
6 551622..553682  PHAGE_Parame_AR158: hypothetical protein AR158_C785L; HELPY_0569; phage(gi157953975)  7e-10  Click
7 complement(554109..555338)  PHAGE_Hypert_2: IS element Dka2 orfB; HELPY_0571; phage(gi300116745)  7e-14  Click
8 555062..555075  attR    CTTTAAGGGCTTTT  N/A  Click
9 complement(555325..555957)  PHAGE_Campyl_CP21: putative transposase, IS607 family; HELPY_0572; phage(gi422935176)  2e-30  Click
10 complement(555954..556139)  hypothetical protein; HELPY_0573  N/A  Click
11 complement(556141..556398)  PHAGE_Yersin_phiR1_37: hypothetical protein; HELPY_0574; phage(gi358356767)  5e-05  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1503699..1503711  attL    AAACTCCTTAATG  N/A  Click
2 1503869..1503880  attL    TTTTTGATTTTG  N/A  Click
3 1510221..1511795  PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; HELPY_1517; phage(gi326536862)  1e-05  Click
4 1511792..1513099  PHAGE_Acanth_1: hypothetical protein ATCV1_Z119L; HELPY_1518; phage(gi155371066)  9e-07  Click
5 1513118..1513414  hypothetical protein; HELPY_1519  N/A  Click
6 1513749..1514027  PHAGE_Helico_phiHP33: hypothetical protein; HELPY_1520; phage(gi371671342)  5e-11  Click
7 1514027..1515151  PHAGE_Helico_phiHP33: integrase/recombinase; HELPY_1521; phage(gi371671343)  3e-123  Click
8 1515148..1515288  PHAGE_Helico_phiHP33: hypothetical protein; HELPY_1522; phage(gi371671344)  1e-13  Click
9 1515363..1515683  PHAGE_Helico_phiHP33: putative transcriptional regulator; HELPY_1523; phage(gi371671345)  8e-36  Click
10 1515670..1515810  putative Hac prophage II protein; HELPY_1524  N/A  Click
11 1515811..1516740  PHAGE_Helico_phiHP33: putative phage replication protein; HELPY_1525; phage(gi371671346)  2e-49  Click
12 1516951..1517241  PHAGE_Helico_phiHP33: hypothetical protein; HELPY_1527; phage(gi371671348)  1e-16  Click
13 1517563..1517574  attR    TTTTTGATTTTG  N/A  Click
14 complement(1517857..1519086)  PHAGE_Campyl_CP21: putative transposase, IS607 family; HELPY_1529; phage(gi422935178)  1e-06  Click
15 complement(1519073..1519705)  PHAGE_Campyl_CP21: putative transposase, IS607 family; HELPY_1530; phage(gi422935176)  2e-30  Click
16 complement(1519702..1519887)  hypothetical protein; HELPY_1531  N/A  Click
17 complement(1519889..1520146)  PHAGE_Yersin_phiR1_37: hypothetical protein; HELPY_1532; phage(gi358356767)  5e-05  Click
18 1521000..1521977  PHAGE_Acanth_mimivirus: putative sel1-like repeat-containing protein; HELPY_1534; phage(gi311977376)  3e-11  Click
19 complement(1522016..1522879)  PHAGE_Clostr_phiMMP04: DNA polymerase III alpha subunit; HELPY_1535; phage(gi414090475)  2e-11  Click
20 complement(1522857..1523510)  ribulose-phosphate 3-epimerase; HELPY_1536  N/A  Click
21 1523581..1524453  fructose-1,6-bisphosphatase; HELPY_1537  N/A  Click
22 1524453..1524656  hypothetical protein; HELPY_1538  N/A  Click
23 1524669..1525565  PHAGE_Cafete_BV_PW1: putative DNA N6-adenine methyltransferase; HELPY_1539; phage(gi310831063)  2e-23  Click
24 1529021..1529033  attR    AAACTCCTTAATG  N/A  Click