gi|254778738|ref|NC_012973.1|  Helicobacter pylori B38, complete genome. [asmbl_id: NC_012973].1576758, gc%: 39.16%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
533436..533449                     attL                                                                                 N/A                 CTTTAAGGGCTTTT
547579..548934                     PHAGE_Glossi_virus: hypothetical protein SGHV062; HELPY_0565; phage(gi168804078)     9e-05               MNLEVKKIDTANARLSAKPSIENLEKRYDKIAQKIAQKVKIDGFRRGKVPLSLVKTRYQAQIEQDAQEEMIQEVLKNAFKELGIENKDLIGSPNLTKFEKKDTHFEIEADIGLKPTIVLDKIKECVPSVGVEIPNEEKIDERLKQLAKDYAKFVDADAQRKAQNDDKLTIDFEGFIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQASEEKEFPLTFPSGYHAEHLAGKEALFKVKLHQIQAREVLEINDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDKKIVFDLPKTIIEQEMDLLFRNALYSMQAEEVKSLQESQEKAKEKRESFRNDATKSVKITFIIDALAKEEKIGVHDNEVFQTLYYEAMMTGQNPENLIEQYRKNNMLAAVKMAMIEDRVLAYLLDKNLPKEQQEILEKMRPNAQKTQVG
548952..549542                     PHAGE_Entero_mEp213: head maturation protease; HELPY_0566; phage(gi428782594)        4e-12               MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNMK
549547..550071                     PHAGE_Caulob_CcrColossus: putative peptide formylmethionine deformylase; HELPY_0567; phage(gi414088160)     2e-20               MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQKHK
550077..551597                     PROPHAGE_Escher_Sakai: putative ATP-dependent protease; putative; phage ComM protein; HELPY_0568(gi15833954)     5e-76               MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHFDLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKEALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINRMRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKDILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEEGNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVARTIADLNACEDIEKSHMLKALSFRKIS
551622..553682                     PHAGE_Parame_AR158: hypothetical protein AR158_C785L; HELPY_0569; phage(gi157953975)     7e-10               MQEYHIHNLDCPDCASKLERDLNKLDCVKKAQINFSTSKLFLDTSDFEKVKAFIKQNEPHLSLSFKEATEKPLSFTPLIATIAVFLGAILILHLNPSPLIEKAVFVVLALVYLVSGKDVILGAFRGLRKGQFFDENALMLIATIAAFCVGAYEESVSIMVFYSAGEFLQKLAIARSKKSLKALVDVAPNLAYLKKGDALVSVAPEDLRVNDIVVVKVGEKVPVDGVVIKGESLLDERALSGESMPVNVSERSKVLGGSLNLKAVLEIQVEKLYKDSSIAKVVDLVQQATNEKSETEKFITKFSRYYTPSVLFIALMIAVLPPLFSMGSFDEWIYRGLVALMVSCPCALVISVPLGYFGGVGAASRKGILMKGVHVLEVLTQAKSIAFDKTGTLTKGVFKVTDIVPQNGHSKEEVLHYASCSQLLSTHPIALSIQKACEEMLKDDKHQHDIKNYEELSGMGVKAQCHTDLIIAGNEKMLDQFHIAHSPSKENGTIVHVAFNQTYVGYIVISDEIKDDAIECLRDLKAQGIENFCILSGDRKSATESIAQTLGCEYHASLLPEEKTSVFKTFKERYKAPAIFVGDGINDAPTLASADVGIGMGKGSELSKQSADIVITNDSLSSLVKVLAIAKKTKSIIWQNILFALGIKAVFIVLGLMGVASLWEAVFGDVGVTLLALANSMRAMRA
complement(554109..555338)         PHAGE_Hypert_2: IS element Dka2 orfB; HELPY_0571; phage(gi300116745)                 7e-14               MTLTERHIIKPTHPIFKRIKDFCHLSKNLYNYANFILREHYFAGFKLPTAYDLINRFVKESQRDYKALPAQSAQQVLMLLSQNWKSYLKALKAYKLKPSSFLARPKIPKFKPKDGVSIGVLTNQQTSFTKGRMTKIKFPKKANLKRLITKINPQTSRLKQVRLIPKTTCFIVEVVYEQTTHKLPQTHGIGIMGIDLGLNNFVTAIDNQSSPFIIKGGGVKSVNQWFNKLKAHYQAKAKTSNKRFWTKRLGKLALWRECKVNDFMHKASAYVVRHCLKKGISTIVIGKNDGWKQELKLGKRTNQNFTNIPYESFIEKLAYKSALVGITLRTTEERFTSKCDHLANEPMQHHEQYLGKRVKRGLFKSSIGKSLNADINGAIGILRKVFPDAVKTLRDSGVVFAPVKISLAF
555062..555075                     attR                                                                                 N/A                 CTTTAAGGGCTTTT
complement(555325..555957)         PHAGE_Campyl_CP21: putative transposase, IS607 family; HELPY_0572; phage(gi422935176)     2e-30               MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLHNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFIELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYSKRRIAKKLLLESKVNPALLKSLNGETDDLD
complement(555954..556139)         hypothetical protein; HELPY_0573                                                     N/A                 MPRLTAKEAEKLLLQNGFVFSRQKGSHRIYVKDKIRQVLPFHSGEILHPKIVKEIMENILK
complement(556141..556398)         PHAGE_Yersin_phiR1_37: hypothetical protein; HELPY_0574; phage(gi358356767)          5e-05               MCIIIRNSLKGSAMLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLEDLEADELAFLSKKNSVIAPIEIAFA

#### region 2 ####
1503699..1503711                   attL                                                                                 N/A                 AAACTCCTTAATG
1503869..1503880                   attL                                                                                 N/A                 TTTTTGATTTTG
1510221..1511795                   PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; HELPY_1517; phage(gi326536862)     1e-05               MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNASNIEVELIAPFLDTEEYGIFREDNHEPLVISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNENKAFSPLLDALEEKFTRLENLEKERRLLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHKITHALESVGHSAEFLKSALLEASALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGSIMHAKERLGHVKNELHNLKEIDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNALLSAKAKDLLLKSPSLILEEAPMSEKGAQKLVLNLQNSQLETLSSGEYSRLRLAFMLLEMEFLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFKENHKSLAKTLSNEERVLEIARMIGGSENIESAISFAKEKLKAQE
1511792..1513099                   PHAGE_Acanth_1: hypothetical protein ATCV1_Z119L; HELPY_1518; phage(gi155371066)     9e-07               MKFFLLKKFSEFLNAQTHFSLKRLSASSFLLETFSKEKHAFVVDLNAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEIKGAKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEAFRFNDRVAKNDILGALPPNIYEHQEEDLDFKDLLEILEKDFLSYQHKELEHKKNQIIKRLNIQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLIHKHESRVVLKDFEDKECTIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLEMFMPFKNSKIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDLWMHVRNIPGSHLIVFCQKNAPKDEVIMELAKMLIKMQKDVFNSYEIDYTQRKFVKIIKGANVIYSKYRTISLKDT
1513118..1513414                   hypothetical protein; HELPY_1519                                                     N/A                 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKDPKEGSKNRYPNSQRAKAFGLEEEEIELWHEEHLLDIVG
1513749..1514027                   PHAGE_Helico_phiHP33: hypothetical protein; HELPY_1520; phage(gi371671342)           5e-11               MRQRNETKTSFNKLMEITQAIQAIQTQKNSQQTSDNANTSEITSQSTPKPKETARTKNSALKPTKRAFSERQRITRLETTHKQALKEIKRGR
1514027..1515151                   PHAGE_Helico_phiHP33: integrase/recombinase; HELPY_1521; phage(gi371671343)          3e-123              MHNYTIYLRGNAIYLSYIKNSKRHRESLSKLIKSLNLDNNQALEYLEGLSLEKILKMQKGVLKSNKEPEQESLKTAKKIKKDTSIKQAKERFFNQKIGLKEESLRFMHLRFSTILKLMNVKESLKVSKITKESVTNYHNNAFKKYKKNTLVSLNSLLKSFLEFCEKEGCIDKTPYFKITMKNAKEGEKIDPFSLNEVKAILKSTPDLRLKAFLTTAFFTGLRTGEQLALLWSDIDFKNKKINIDKSLNLSGVITSPKNKPSIREVDLLEPVEKILKELKATEPDTKKMIFLSVPKRTQDFQRAFKKLLKALNLKDRKLYATRHTFASLMLSQGEEAMWISQTLGHKDLNTTYKTYSHYIPKQDKERAKFLKGIL
1515148..1515288                   PHAGE_Helico_phiHP33: hypothetical protein; HELPY_1522; phage(gi371671344)           1e-13               MKENNKENTLGVFHYLAYKRIKESNTDLSFFDFIQKLEKLQKKIHD
1515363..1515683                   PHAGE_Helico_phiHP33: putative transcriptional regulator; HELPY_1523; phage(gi371671345)     8e-36               MEQEKLQPIDLEVLKALYKKAYLPKTADKISKDLNIDYYCTLKIFNKLERKGLCDQWVINKKREKDKKNNYYKVCYLNDLGKDLCVYLNALKAINQPKKRVNNDHL
1515670..1515810                   putative Hac prophage II protein; HELPY_1524                                         N/A                 MITYDIDKKQPKKSKKTILEAKSKIFLSALIALIFTLAFLFKMKGE
1515811..1516740                   PHAGE_Helico_phiHP33: putative phage replication protein; HELPY_1525; phage(gi371671346)     2e-49               MNYILKNNLNVESNYTKTANSILIDSPLSRDARIVFITLSSLASSFNPRVEFLCKQLDMNAKTLNKYLKELVQKGFLKIIYYKNKLGKFLGKRAYILAPTKEQLEQDDFIIVDESNRTETPKFTMRKIDKKQAEKPLKAEVCTETPIFTTLINKKNNNKHEKMNLNVSENLQNQADQKNKHDNFSCFNGSKIKNFSMFKRFSDFVFSILGNLDTRGLEKRDKKAFERFLHYRNEKIKLTYATKKALLKQALELKEQGQDIVKCVDQSIRKGYNEIYALMEFKSSRTAQKQEEEPFEYKPNPKYNGYCIW
1516951..1517241                   PHAGE_Helico_phiHP33: hypothetical protein; HELPY_1527; phage(gi371671348)           1e-16               MRKHGINLNDPIEELLKTTRKKLMLRESNYKKLKMMKRKKRYTFARVVRLVILEGIRKFQKENLFLNLQMQDFEIAISILEQKTKRRQKEGKKCRI
1517563..1517574                   attR                                                                                 N/A                 TTTTTGATTTTG
complement(1517857..1519086)       PHAGE_Campyl_CP21: putative transposase, IS607 family; HELPY_1529; phage(gi422935178)     1e-06               MTLTERHIIKPTHPIFKRIKDFCHLSKNLYNYANFILREHYFAGFKLPTAYDLINRFVKESQRDYKALPAQSAQQVLMLLSQNWKSYLKALKAYKLKPSSFLARPKIPKFKPKDGVSIGVLTNQQTSFTKGRMTKIKFPKKANLKRLITKINPQTSRLKQVRLIPKTTCFIVEVVYEQTTHKLPQTHGIGIMGIDLGLNNFVTAIDNQSSPFIIKGGGVKSVNQWFNKLKAHYQAKAKTSNKRFWTKRLGKLALWRECKVNDFMHKASAYVVRHCLKKGISTIVIGKNDGWKQELKLGKRTNQNFTNIPYESFIEKLAYKSALVGITLRTTEERFTSKCDHLANEPMQHHEQYLGKRVKRGLFKSSIGKSLNADINGAIGILRKVFPDAVKTLRDSGVVFAPVKISLAF
complement(1519073..1519705)       PHAGE_Campyl_CP21: putative transposase, IS607 family; HELPY_1530; phage(gi422935176)     2e-30               MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLHNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFIELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYSKRRIAKKLLLESKVNPALLKSLNGETDDLD
complement(1519702..1519887)       hypothetical protein; HELPY_1531                                                     N/A                 MPRLTAKEAEKLLLQNGFVFSRQKGSHRIYVKDKIRQVLPFHSGEILHPKIVKEIMENILK
complement(1519889..1520146)       PHAGE_Yersin_phiR1_37: hypothetical protein; HELPY_1532; phage(gi358356767)          5e-05               MCIIIRNSLKGSAMLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLEDLEADELAFLSKKNSVIAPIEIAFA
1521000..1521977                   PHAGE_Acanth_mimivirus: putative sel1-like repeat-containing protein; HELPY_1534; phage(gi311977376)     3e-11               MLRGVKKAVFRVLCLGALCLGGLMAEQDSKELIFSGITIYTDKDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVAKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEKSCKLGLKEACDILKEQKQ
complement(1522016..1522879)       PHAGE_Clostr_phiMMP04: DNA polymerase III alpha subunit; HELPY_1535; phage(gi414090475)     2e-11               MSDSLLHKDIQALIARLKHQDLSLSMLEKSLSRLIYDEINLEYLKACGLNFIETSENLITLKNLKTPLKDEVFSFIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNAPSAHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPRAKYQETPSPFSLFERTKGLFNIIKATS
complement(1522857..1523510)       ribulose-phosphate 3-epimerase; HELPY_1536                                           N/A                 MKVAPSLLSADFMHLAKEIESVSNADFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEKHPHRVLQLIRNSGITPGIVLNPHTHEESVKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIRRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFKSKDRKLAIEGLQNVRQPLA
1523581..1524453                   fructose-1,6-bisphosphatase; HELPY_1537                                              N/A                 MDYKHFKGKHANIVIEIISLLEKGVKKAQEILEKPDAGSYTKLENSSGDTPIKADLALDKFLEENFLSLENIKSVFSEEKETPVTKENGSYLIAYDPLDGSSVMEANFLVGTIIGVYEKDYKVQNLVASLYVVFGHKIELVVALDKVYRYAFYQNKFHFIETIVLENKGKIVASGGNQKDFSLGLKKALEGFFAENYRLRYSGSMVADVHHVLIKKGGMFSYPQKKLRKLFEVFPLALIIEKAKGEAFYFDKGVKKRLLEQSVENYHEKSECYLASPHEAQILEKYLKGE
1524453..1524656                   hypothetical protein; HELPY_1538                                                     N/A                 MQNSAKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLGEAGGFDFN
1524669..1525565                   PHAGE_Cafete_BV_PW1: putative DNA N6-adenine methyltransferase; HELPY_1539; phage(gi310831063)     2e-23               MASNTILQKNLDAFYTHPKIARFCLDLLKDLINQNLGLDLNKFHFLEPSAGSGSFVGALKELGIADWDALDIAPKAQGIQKKDYLLELIEFDKKRVIVGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSIQKRIDKRAKLVLNADLEKNAFIFNERPYDVKCVFQIYMHKNIALNLKDERIIAPPKIRHSDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNANLLIKNRQYFFIKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
1529021..1529033                   attR                                                                                 N/A                 AAACTCCTTAATG