| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 48 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 691459..692937 | PHAGE_Feldma_virus: putative sensor histidine kinase; Rpal_0639; phage(gi197322366) | 3e-06 | Click |
| 2 | 693187..693263 | tRNA | N/A | Click |
| 3 | complement(693685..694212) | hypothetical protein; Rpal_0640 | N/A | Click |
| 4 | complement(694225..695016) | PHAGE_Haemop_SuMu: transcription regulator; Rpal_0641; phage(gi418489036) | 6e-17 | Click |
| 5 | 695097..695396 | PHAGE_Escher_D108: Ner; Rpal_0642; phage(gi281199646) | 2e-06 | Click |
| 6 | 695393..695665 | hypothetical protein; Rpal_0643 | N/A | Click |
| 7 | 695730..696545 | PHAGE_Rhodob_RcapMu: ParB-like nuclease; Rpal_0644; phage(gi356870851) | 1e-16 | Click |
| 8 | 696550..697002 | PHAGE_Rhodob_RcapMu: conserved transposable prophage protein; Rpal_0645; phage(gi356870852) | 3e-13 | Click |
| 9 | 696780..696792 | attL CTCGCCAGAGAAG | N/A | Click |
| 10 | 696999..699173 | PHAGE_Rhodob_RC1: integrase; Rpal_0646; phage(gi472339716) | 6e-131 | Click |
| 11 | 699185..699955 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0647; phage(gi472339715) | 3e-36 | Click |
| 12 | 699957..700598 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0648; phage(gi472339714) | 2e-14 | Click |
| 13 | 700598..700984 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0649; phage(gi472339713) | 3e-20 | Click |
| 14 | 700981..701607 | Chromosomal replication initiator DnaA domain; Rpal_0650 | N/A | Click |
| 15 | 701600..701845 | hypothetical protein; Rpal_0651 | N/A | Click |
| 16 | 701838..702488 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0652; phage(gi472339708) | 2e-64 | Click |
| 17 | 703103..703315 | hypothetical protein; Rpal_0653 | N/A | Click |
| 18 | 703312..703539 | PHAGE_Pseudo_KPP10: hypothetical protein; Rpal_0654; phage(gi327198142) | 4e-13 | Click |
| 19 | 703542..703742 | hypothetical protein; Rpal_0655 | N/A | Click |
| 20 | 703739..704167 | response regulator receiver protein; Rpal_0656 | N/A | Click |
| 21 | 704164..704916 | PHAGE_Rhizob_3: p096; Rpal_0657; phage(gi195546626) | 3e-14 | Click |
| 22 | 704913..705521 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0658; phage(gi472339703) | 2e-29 | Click |
| 23 | 705524..705700 | hypothetical protein; Rpal_0659 | N/A | Click |
| 24 | 705746..705979 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0660; phage(gi472339701) | 4e-05 | Click |
| 25 | 705976..706386 | PHAGE_Rhodob_RcapMu: putative transcriptional regulator; Rpal_0661; phage(gi356870865) | 3e-05 | Click |
| 26 | 706503..707897 | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; Rpal_0662 | N/A | Click |
| 27 | 707910..708122 | hypothetical protein; Rpal_0663 | N/A | Click |
| 28 | 708119..708517 | exonuclease SbcC; Rpal_0664 | N/A | Click |
| 29 | 708444..708719 | hypothetical protein; Rpal_0665 | N/A | Click |
| 30 | 708716..708937 | PHAGE_Burkho_KS10: hypothetical protein KS10_gp07; Rpal_0666; phage(gi198449269) | 6e-10 | Click |
| 31 | 708937..709392 | hypothetical protein; Rpal_0667 | N/A | Click |
| 32 | 709389..709700 | PHAGE_Escher_D108: hypothetical protein; Rpal_0668; phage(gi281199669) | 2e-06 | Click |
| 33 | 709705..710283 | PHAGE_Pseudo_B3: small terminase subunit; Rpal_0669; phage(gi56692598) | 5e-09 | Click |
| 34 | 710280..711605 | PHAGE_Entero_Mu: putative portal protein; Rpal_0670; phage(gi9633519) | 2e-13 | Click |
| 35 | 711599..713191 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0671; phage(gi472339690) | 4e-69 | Click |
| 36 | 713194..714375 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0672; phage(gi472339689) | 2e-31 | Click |
| 37 | 714647..715609 | PHAGE_Rhodob_RC1: I protein; Rpal_0673; phage(gi472339684) | 3e-13 | Click |
| 38 | 715609..715998 | PHAGE_Pseudo_B3: hypothetical protein B3ORF37; Rpal_0674; phage(gi56692606) | 4e-16 | Click |
| 39 | 716008..716084 | tRNA | N/A | Click |
| 40 | 716133..717095 | PHAGE_Pseudo_B3: capsid protein; Rpal_0675; phage(gi56692607) | 1e-73 | Click |
| 41 | 717108..717407 | PHAGE_Helico_2: hypothetical protein; Rpal_0676; phage(gi370703036) | 4e-06 | Click |
| 42 | 717511..717795 | hypothetical protein; Rpal_0677 | N/A | Click |
| 43 | 717792..718019 | hypothetical protein; Rpal_0678 | N/A | Click |
| 44 | 718019..718492 | hypothetical protein; Rpal_0679 | N/A | Click |
| 45 | 718492..718986 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_0680; phage(gi472339688) | 3e-07 | Click |
| 46 | 718983..719570 | hypothetical protein; Rpal_0681 | N/A | Click |
| 47 | 719372..719384 | attR CTCGCCAGAGAAG | N/A | Click |
| 48 | 719567..720187 | hypothetical protein; Rpal_0682 | N/A | Click |
| 49 | 720193..720474 | hypothetical protein; Rpal_0683 | N/A | Click |
| 50 | 720478..720894 | PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; Rpal_0684; phage(gi28198990) | 1e-06 | Click |
| 51 | 720891..721829 | PROPHAGE_Salmon_Ty2: phage baseplate assembly protein; Rpal_0685; phage(gi29143752) | 5e-22 | Click |
| 52 | 721826..723085 | PHAGE_Vibrio_vB_VpaM_MAR: tail protein; Rpal_0686; phage(gi428782739) | 1e-11 | Click |
Region 2, total : 18 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2272138..2273175) | PHAGE_Entero_phiEco32: Appr-1-p processing enzyme family; Rpal_2099; phage(gi167583592) | 1e-19 | Click |
| 2 | complement(2273187..2273858) | hypothetical protein; Rpal_2100 | N/A | Click |
| 3 | 2274202..2275128 | hypothetical protein; Rpal_2101 | N/A | Click |
| 4 | 2275205..2276365 | PHAGE_Strept_6: terminase large subunit; Rpal_2102; phage(gi93007440) | 3e-66 | Click |
| 5 | 2276463..2276747 | hypothetical protein; Rpal_2103 | N/A | Click |
| 6 | complement(2276767..2277075) | hypothetical protein; Rpal_2104 | N/A | Click |
| 7 | complement(2277158..2277925) | PHAGE_Emilia_86: putative serine protease; Rpal_2105; phage(gi73852491) | 7e-10 | Click |
| 8 | 2277990..2278550 | PHAGE_Rhodob_RcapNL: hypothetical protein; Rpal_2106; phage(gi461474967) | 9e-10 | Click |
| 9 | 2278547..2278867 | PHAGE_Entero_mEp235: hypothetical protein; Rpal_2107; phage(gi428781819) | 2e-07 | Click |
| 10 | 2278864..2279274 | PHAGE_Rhodob_RcapNL: gene transfer agent (GTA) orfg8-like protein; Rpal_2108; phage(gi461474971) | 2e-12 | Click |
| 11 | 2279287..2279694 | PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Rpal_2109; phage(gi461474972) | 1e-20 | Click |
| 12 | 2279704..2280021 | gene transfer agent (GTA) like protein; Rpal_2110 | N/A | Click |
| 13 | 2280018..2280221 | hypothetical protein; Rpal_2111 | N/A | Click |
| 14 | 2280218..2280811 | PHAGE_Shigel_EP23: phage tail length tape-measure protein 1; Rpal_2112; phage(gi371496286) | 1e-14 | Click |
| 15 | 2280950..2281588 | PHAGE_Roseob_1: putative glycoside hydrolase; Rpal_2113; phage(gi331028135) | 8e-35 | Click |
| 16 | 2281834..2283228 | hypothetical protein; Rpal_2114 | N/A | Click |
| 17 | 2283582..2284493 | PHAGE_Roseob_1: gene transfer agent; Rpal_2115; phage(gi331028136) | 4e-62 | Click |
| 18 | 2284533..2284985 | PHAGE_Roseob_1: phage cell wall peptidase; Rpal_2116; phage(gi331028137) | 2e-28 | Click |
Region 3, total : 53 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3593599..3593637 | attL GCTTGACGCGGCGTCCTGCGCGGTGTGGCTCGCACCCAC | N/A | Click |
| 2 | complement(3600241..3602790) | PHAGE_Entero_vB_EcoM_FV3: putative tail fiber protein; Rpal_3342; phage(gi422936358) | 9e-09 | Click |
| 3 | complement(3602792..3603265) | PHAGE_Celeri_P12053L: GCN5-related N-acetyltransferase; Rpal_3343; phage(gi399528882) | 9e-12 | Click |
| 4 | complement(3603265..3603915) | hypothetical protein; Rpal_3344 | N/A | Click |
| 5 | complement(3603912..3604535) | hypothetical protein; Rpal_3345 | N/A | Click |
| 6 | complement(3604532..3606580) | PHAGE_Xantho_CP1: putative tail length tape measure protein; Rpal_3346; phage(gi431811013) | 1e-08 | Click |
| 7 | complement(3606583..3606924) | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3347; phage(gi472339676) | 6e-09 | Click |
| 8 | complement(3607017..3607346) | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3348; phage(gi472339677) | 3e-14 | Click |
| 9 | complement(3607359..3608300) | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3349; phage(gi472339678) | 2e-68 | Click |
| 10 | complement(3608303..3608473) | hypothetical protein; Rpal_3350 | N/A | Click |
| 11 | complement(3608470..3608916) | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3351; phage(gi472339679) | 2e-18 | Click |
| 12 | complement(3608913..3609473) | PHAGE_Rhodob_RcapMu: virion morphogenesis protein; Rpal_3352; phage(gi356870876) | 3e-22 | Click |
| 13 | complement(3609473..3609901) | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3353; phage(gi472339680) | 1e-33 | Click |
| 14 | complement(3609906..3610232) | hypothetical protein; Rpal_3354 | N/A | Click |
| 15 | complement(3610347..3610423) | tRNA | N/A | Click |
| 16 | complement(3610414..3610875) | hypothetical protein; Rpal_3355 | N/A | Click |
| 17 | complement(3610887..3611777) | PHAGE_Rhodob_RC1: major head subunit; Rpal_3356; phage(gi472339682) | 2e-122 | Click |
| 18 | complement(3611830..3612606) | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3357; phage(gi472339683) | 3e-36 | Click |
| 19 | complement(3612762..3613868) | PHAGE_Rhodob_RC1: I protein; Rpal_3358; phage(gi472339684) | 2e-80 | Click |
| 20 | complement(3614253..3614708) | hypothetical protein; Rpal_3359 | N/A | Click |
| 21 | complement(3614723..3615367) | phage repressor; Rpal_3360 | N/A | Click |
| 22 | 3615468..3615728 | hypothetical protein; Rpal_3361 | N/A | Click |
| 23 | 3615725..3615997 | hypothetical protein; Rpal_3362 | N/A | Click |
| 24 | 3615994..3616449 | PHAGE_Rhodob_RcapMu: conserved transposable prophage protein; Rpal_3363; phage(gi356870852) | 4e-10 | Click |
| 25 | 3616446..3616775 | hypothetical protein; Rpal_3364 | N/A | Click |
| 26 | 3616795..3618951 | PHAGE_Rhodob_RC1: integrase; Rpal_3365; phage(gi472339716) | 6e-123 | Click |
| 27 | 3618984..3619421 | hypothetical protein; Rpal_3366 | N/A | Click |
| 28 | 3619450..3620244 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3367; phage(gi472339715) | 2e-33 | Click |
| 29 | 3620241..3620621 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3368; phage(gi472339714) | 7e-08 | Click |
| 30 | 3620618..3621013 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3369; phage(gi472339713) | 3e-20 | Click |
| 31 | 3621003..3621290 | hypothetical protein; Rpal_3370 | N/A | Click |
| 32 | 3621287..3621640 | hypothetical protein; Rpal_3371 | N/A | Click |
| 33 | 3621642..3622190 | PHAGE_Rhodob_RcapMu: host-nuclease inhibitor Gam; Rpal_3372; phage(gi356870857) | 1e-21 | Click |
| 34 | 3622187..3622582 | PHAGE_Entero_mEp390: hypothetical protein; Rpal_3373; phage(gi428782707) | 8e-06 | Click |
| 35 | 3622579..3623076 | Chromosomal replication initiator DnaA domain; Rpal_3374 | N/A | Click |
| 36 | 3623073..3623774 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3375; phage(gi472339703) | 3e-24 | Click |
| 37 | 3623776..3624174 | hypothetical protein; Rpal_3376 | N/A | Click |
| 38 | 3624178..3624759 | PHAGE_Caulob_phiCbK: putative GcrA-like cell cycle regulator; Rpal_3377; phage(gi414087935) | 2e-10 | Click |
| 39 | 3624746..3624925 | hypothetical protein; Rpal_3378 | N/A | Click |
| 40 | 3624922..3625134 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Rpal_3379; phage(gi374531689) | 2e-13 | Click |
| 41 | 3625131..3625370 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3380; phage(gi472339701) | 2e-05 | Click |
| 42 | 3625367..3625762 | PHAGE_Burkho_KS10: hypothetical protein KS10_gp27; Rpal_3381; phage(gi198449289) | 4e-07 | Click |
| 43 | 3625869..3626783 | PHAGE_Agroba_7_7_1: hypothetical protein; Rpal_3382; phage(gi435844350) | 7e-50 | Click |
| 44 | 3626780..3627328 | hypothetical protein; Rpal_3383 | N/A | Click |
| 45 | 3627276..3627518 | hypothetical protein; Rpal_3384 | N/A | Click |
| 46 | 3627521..3627901 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3385; phage(gi472339696) | 6e-07 | Click |
| 47 | 3627898..3628194 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3386; phage(gi472339695) | 1e-18 | Click |
| 48 | 3628199..3628819 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3387; phage(gi472339694) | 1e-34 | Click |
| 49 | 3628816..3629028 | hypothetical protein; Rpal_3388 | N/A | Click |
| 50 | 3629051..3629548 | PHAGE_Mycoba_Che9c: gp69; Rpal_3389; phage(gi29566175) | 7e-08 | Click |
| 51 | 3629545..3629889 | PHAGE_Sinorh_PBC5: hypothetical protein PBC5p80; Rpal_3390; phage(gi18071287) | 2e-07 | Click |
| 52 | 3629886..3631520 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3391; phage(gi472339692) | 2e-130 | Click |
| 53 | 3631517..3631744 | hypothetical protein; Rpal_3392 | N/A | Click |
| 54 | 3631744..3633375 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3393; phage(gi472339690) | 3e-153 | Click |
| 55 | 3633368..3634132 | PHAGE_Rhodob_RC1: hypothetical protein; Rpal_3394; phage(gi472339689) | 3e-36 | Click |
| 56 | 3634551..3634589 | attR GCTTGACGCGGCGTCCTGCGCGGTGTGGCTCGCACCCAC | N/A | Click |
Region 4, total : 23 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4268318..4269514 | PHAGE_Entero_mEp235: portal protein; Rpal_3975; phage(gi428781813) | 3e-37 | Click |
| 2 | 4269511..4270215 | PHAGE_Salmon_1: putative bacteriophage tail assembly protein I; Lambda gpI homolog; Rpal_3976; phage(gi169257201) | 8e-16 | Click |
| 3 | 4270215..4270541 | PHAGE_Rhizob_3: p015; Rpal_3977; phage(gi195546546) | 9e-06 | Click |
| 4 | 4270227..4270238 | attL CAAAATCATCGC | N/A | Click |
| 5 | 4270538..4270735 | hypothetical protein; Rpal_3978 | N/A | Click |
| 6 | 4270735..4271232 | PHAGE_Azospi_Cd: phage head maturation protease; Rpal_3979; phage(gi168495135) | 2e-16 | Click |
| 7 | 4271235..4272383 | PHAGE_Azospi_Cd: Phage major capsid protein; Rpal_3980; phage(gi168495136) | 1e-54 | Click |
| 8 | 4272389..4272958 | hypothetical protein; Rpal_3981 | N/A | Click |
| 9 | 4272949..4273296 | PHAGE_Bacill_phi105: hypothetical protein phi105_50; Rpal_3982; phage(gi22855043) | 9e-14 | Click |
| 10 | 4273298..4273720 | PHAGE_Staphy_Twort: ORF076; Rpal_3983; phage(gi66391329) | 3e-05 | Click |
| 11 | 4273735..4274016 | PHAGE_Entero_mEp235: head-tail connector II; Rpal_3984; phage(gi428781817) | 4e-06 | Click |
| 12 | 4274018..4274434 | hypothetical protein; Rpal_3985 | N/A | Click |
| 13 | 4274434..4274754 | phage head-tail adaptor; Rpal_3986 | N/A | Click |
| 14 | 4274733..4275137 | hypothetical protein; Rpal_3987 | N/A | Click |
| 15 | 4275134..4275511 | PHAGE_Geobac_E2: putative terminase small subunit; Rpal_3988; phage(gi148747728) | 3e-06 | Click |
| 16 | 4275486..4277108 | PHAGE_Entero_mEp235: terminase large subunit; Rpal_3989; phage(gi428781812) | 5e-48 | Click |
| 17 | 4277108..4277503 | phage protein, HK97 gp10 family; Rpal_3990 | N/A | Click |
| 18 | 4277500..4277832 | hypothetical protein; Rpal_3991 | N/A | Click |
| 19 | 4277832..4280048 | PHAGE_Burkho_KS9: tail length tape measure protein gp13; Rpal_3992; phage(gi255033744) | 5e-16 | Click |
| 20 | 4280153..4281001 | hypothetical protein; Rpal_3993 | N/A | Click |
| 21 | 4281200..4281391 | hypothetical protein; Rpal_3994 | N/A | Click |
| 22 | 4281607..4282083 | hypothetical protein; Rpal_3995 | N/A | Click |
| 23 | complement(4282672..4283451) | PROPHAGE_Shewan_MR-1: serine protease; Rpal_3996; phage(gi24375430) | 6e-07 | Click |
| 24 | 4283235..4283246 | attR CAAAATCATCGC | N/A | Click |
| 25 | complement(4283460..4285205) | PROPHAGE_Escher_Sakai: putative integrase; Rpal_3997; phage(gi15834496) | 7e-26 | Click |