Definition Lactobacillus reuteri JCM 1112, complete genome.
Accession NC_010609
Length 2,039,414
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 254640..256007  PHAGE_Acanth_mimivirus: probable UDP-N-acetylglucosamine pyrophosphorylase; LAR_0211; phage(gi311978096)  6e-31  Click
2 256082..257071  PHAGE_Cronob_vB_CsaP_GAP52: putative ribose-phosphate pyrophosphokinase; LAR_0212; phage(gi414087562)  1e-17  Click
3 257247..257984  PHAGE_Pseudo_1: tail fiber protein; LAR_0213; phage(gi29366736)  1e-05  Click
4 complement(258063..258884)  hypothetical protein; LAR_0214  N/A  Click
5 complement(258884..260251)  PHAGE_Cafete_BV_PW1: putative HD superfamily phosphohydrolase; LAR_0215; phage(gi310831117)  6e-25  Click
6 complement(260253..261077)  hypothetical protein; LAR_0216  N/A  Click
7 261278..261685  PHAGE_Helico_phiHP33: transposase; LAR_0217; phage(gi371671361)  2e-17  Click
8 261685..262860  PHAGE_Lactob_1: transposase; LAR_0218; phage(gi226377715)  6e-105  Click
Region 2, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 892860..893558  PHAGE_Riemer_RAP44: adenine nucleotide alpha hydrolase-like protein; LAR_0782; phage(gi418489897)  5e-20  Click
2 893558..893983  hypothetical protein; LAR_0783  N/A  Click
3 894015..894776  PHAGE_Riemer_RAP44: ParB-like nuclease; LAR_0784; phage(gi418489898)  4e-17  Click
4 894793..895296  hypothetical protein; LAR_0785  N/A  Click
5 895271..896566  PHAGE_Strept_SMP: terminase large subunit; LAR_0786; phage(gi119953777)  2e-123  Click
6 896566..898227  PHAGE_Entero_phiFL2A: portal protein; LAR_0787; phage(gi281416526)  9e-68  Click
7 898227..899177  PHAGE_Strept_SMP: putative head morphogenesis protein; LAR_0788; phage(gi119953779)  5e-07  Click
8 899557..900216  PHAGE_Staphy_187: ORF021; LAR_0789; phage(gi66395236)  2e-12  Click
9 900231..901307  PHAGE_Entero_phiFL3A: coat protein; LAR_0790; phage(gi281416261)  4e-41  Click
10 901320..901685  PHAGE_Lactoc_1: ORF38; LAR_0791; phage(gi13786569)  6e-10  Click
11 901676..901999  hypothetical protein; LAR_0792  N/A  Click
12 901989..902549  hypothetical protein; LAR_0793  N/A  Click
13 902971..903618  hypothetical protein; LAR_0794  N/A  Click
14 903638..904183  PHAGE_Bacill_SPP1: hypothetical protein SPP1p033; LAR_0795; phage(gi22855078)  6e-06  Click
15 904276..904455  hypothetical protein; LAR_0796  N/A  Click
16 904459..908109  PHAGE_Strept_Sfi21: putative minor tail protein; LAR_0797; phage(gi9632950)  2e-115  Click
Region 3, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 903569..903584  attL    TTTATTCACAAAACAA  N/A  Click
2 908106..908993  PHAGE_Staphy_2: phage tail tape measure protein like; LAR_0798; phage(gi156604006)  4e-13  Click
3 908981..911221  PHAGE_Lactob_LF1: phage-associated protein/endopeptidase; LAR_0799; phage(gi418489399)  1e-117  Click
4 911190..914786  PHAGE_Lactob_LF1: tail fiber; LAR_0800; phage(gi418489400)  2e-55  Click
5 914779..915051  hypothetical protein; LAR_0801  N/A  Click
6 915094..915366  PHAGE_Lactob_LF1: hypothetical protein; LAR_0802; phage(gi418489402)  8e-14  Click
7 915379..916524  PHAGE_Lactob_LF1: GDSL family lipase; LAR_0803; phage(gi418489403)  4e-82  Click
8 916521..917636  PHAGE_Lactob_LF1: hypothetical protein; LAR_0804; phage(gi418489404)  8e-65  Click
9 917639..918052  hypothetical protein; LAR_0805  N/A  Click
10 918036..918164  hypothetical protein; LAR_0806  N/A  Click
11 918203..918754  hypothetical protein; LAR_0807  N/A  Click
12 918721..919962  PHAGE_Equid__4: envelope glycoprotein J; LAR_0808; phage(gi9629801)  2e-06  Click
13 920410..921615  PHAGE_Lactob_A2: lysin; LAR_0809; phage(gi22296540)  1e-52  Click
14 complement(921867..923396)  gluconate kinase; LAR_0810  N/A  Click
15 923624..924157  putative acetyltransferase; LAR_0811  N/A  Click
16 complement(924665..924895)  hypothetical protein; LAR_0812  N/A  Click
17 925644..927581  putative amidase; LAR_0813  N/A  Click
18 927663..927938  hypothetical protein; LAR_0814  N/A  Click
19 complement(927999..928490)  hypothetical protein; LAR_0815  N/A  Click
20 928800..930332  PHAGE_Acinet_Bphi_B1251: putative restriction-modification protein; LAR_0816; phage(gi423261981)  1e-21  Click
21 931508..932482  PHAGE_Achole_L2: integrase; LAR_0817; phage(gi9626516)  2e-14  Click
22 937759..937774  attR    TTTATTCACAAAACAA  N/A  Click
Region 4, total : 46 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1191956..1191967  attL    ATTATGAATAAA  N/A  Click
2 complement(1192522..1193904)  PHAGE_Bordet_1: reverse transcriptase; LAR_1036; phage(gi41179367)  5e-12  Click
3 complement(1194400..1195227)  PHAGE_Cafete_BV_PW1: putative apurinic-apyrimidinic endonuclease 1; LAR_1037; phage(gi310831095)  2e-42  Click
4 complement(1195230..1195565)  PHAGE_Entero_BC_611: nucleoside triphosphate pyrophosphohydrolase; LAR_1038; phage(gi392972820)  3e-20  Click
5 1195703..1195936  hypothetical protein; LAR_1039  N/A  Click
6 complement(1196399..1196857)  PROPHAGE_Salmon_Ty2: transposase; LAR_1040; phage(gi29143766)  4e-42  Click
7 complement(1198095..1199294)  PHAGE_Lactob_A2: lysin; LAR_1041; phage(gi22296540)  3e-53  Click
8 complement(1199284..1199655)  PHAGE_Lactob_LP65: hypothetical protein LP65_gp089; LAR_1042; phage(gi56693137)  3e-11  Click
9 complement(1199993..1201153)  PHAGE_Lactob_LF1: hypothetical protein; LAR_1043; phage(gi418489405)  3e-06  Click
10 complement(1201120..1201671)  hypothetical protein; LAR_1044  N/A  Click
11 complement(1201710..1201838)  hypothetical protein; LAR_1045  N/A  Click
12 complement(1201822..1202235)  hypothetical protein; LAR_1046  N/A  Click
13 complement(1202238..1203353)  PHAGE_Lactob_LF1: hypothetical protein; LAR_1047; phage(gi418489404)  8e-65  Click
14 complement(1203350..1204495)  PHAGE_Lactob_LF1: GDSL family lipase; LAR_1048; phage(gi418489403)  3e-82  Click
15 complement(1204508..1204777)  PHAGE_Lactob_LF1: hypothetical protein; LAR_1049; phage(gi418489402)  4e-13  Click
16 complement(1204820..1205062)  hypothetical protein; LAR_1050  N/A  Click
17 complement(1205055..1209134)  PHAGE_Lactob_LF1: tail fiber; LAR_1051; phage(gi418489400)  4e-42  Click
18 complement(1209082..1210839)  PHAGE_Lactob_LF1: phage-associated protein/endopeptidase; LAR_1052; phage(gi418489399)  3e-28  Click
19 complement(1210841..1211686)  PHAGE_Lactob_LF1: hypothetical protein; LAR_1053; phage(gi418489398)  4e-41  Click
20 complement(1211701..1215540)  PHAGE_Lactob_phiAT3: putative minor tail protein; LAR_1054; phage(gi48697271)  3e-132  Click
21 complement(1215757..1216155)  hypothetical protein; LAR_1055  N/A  Click
22 complement(1216205..1216915)  PHAGE_Strept_Sfi21: major tail protein; LAR_1056; phage(gi9632948)  6e-18  Click
23 complement(1217300..1217725)  PHAGE_Lactob_phiAT3: putative head-tail joining protein; LAR_1057; phage(gi48697267)  8e-21  Click
24 complement(1218037..1218405)  PHAGE_Strept_YMC_2011: putative DNA packaging protein; LAR_1058; phage(gi399498724)  4e-19  Click
25 complement(1218425..1219609)  PHAGE_Lactob_phiadh: major head protein; LAR_1059; phage(gi9633043)  2e-128  Click
26 complement(1219590..1220324)  PHAGE_Lactob_Sha1: protease subunit of ATP-dependent Clp protease; LAR_1060; phage(gi418489805)  9e-63  Click
27 complement(1220308..1221498)  PHAGE_Lactob_Sha1: phage portal protein; LAR_1061; phage(gi418489804)  1e-134  Click
28 complement(1221685..1223574)  PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; LAR_1062; phage(gi418489802)  0.0  Click
29 1223810..1224247  hypothetical protein; LAR_1063  N/A  Click
30 complement(1224270..1224743)  PHAGE_Strept_7201: ORF21; LAR_1064; phage(gi9634648)  4e-40  Click
31 complement(1224888..1225424)  PHAGE_Lactob_Sha1: restriction endonuclease; LAR_1065; phage(gi418489800)  4e-55  Click
32 complement(1225492..1225671)  PHAGE_Lactob_JCL1032: hypothetical protein; LAR_1066; phage(gi418489174)  4e-11  Click
33 complement(1226331..1226789)  PROPHAGE_Salmon_Ty2: transposase; LAR_1067; phage(gi29143766)  4e-42  Click
34 complement(1227062..1227913)  hypothetical protein; LAR_1068  N/A  Click
35 complement(1229520..1229840)  hypothetical protein; LAR_1069  N/A  Click
36 complement(1230099..1230287)  hypothetical protein; LAR_1070  N/A  Click
37 complement(1230287..1230673)  hypothetical protein; LAR_1071  N/A  Click
38 complement(1231463..1231741)  hypothetical protein; LAR_1072  N/A  Click
39 complement(1232507..1233391)  PHAGE_Bacill_phBC6A52: replication protein; LAR_1073; phage(gi31415828)  1e-28  Click
40 complement(1233369..1234265)  PHAGE_Lactob_LF1: hypothetical protein; LAR_1074; phage(gi418489429)  2e-107  Click
41 complement(1234177..1235166)  PHAGE_Lactob_LF1: RecT protein; LAR_1075; phage(gi418489428)  2e-69  Click
42 1235663..1236169  hypothetical protein; LAR_1076  N/A  Click
43 complement(1236739..1237512)  PHAGE_Lactob_Lj928: putative antirepressor; LAR_1077; phage(gi41179298)  1e-80  Click
44 complement(1237561..1237764)  PHAGE_Lactob_Lj965: putative cro repressor; LAR_1078; phage(gi41179225)  3e-15  Click
45 1237943..1238380  PHAGE_Geobac_GBSV1: immunity repressor protein; LAR_1079; phage(gi115334658)  7e-27  Click
46 1238962..1239471  PHAGE_Lactob_Lj965: putative superinfection immunity protein; LAR_1080; phage(gi41179219)  3e-51  Click
47 1239631..1239642  attR    ATTATGAATAAA  N/A  Click
48 1239954..1241084  PHAGE_Lactob_JCL1032: integrase; LAR_1081; phage(gi418489141)  8e-52  Click