| Definition | Cupriavidus taiwanensis plasmid pRALTA, complete sequence. |
|---|---|
| Accession | NC_010529 |
| Length | 557,200 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 117493..117504 | attL AGACGCCCGAAA | N/A | Click |
| 2 | 119603..119965 | PHAGE_Stx2_c_1717: truncated transposase; pRALTA_0136; phage(gi209447151) | 9e-10 | Click |
| 3 | 119965..120312 | PHAGE_Stx2_c_1717: transposase; pRALTA_0137; phage(gi209447152) | 4e-41 | Click |
| 4 | 120342..121661 | PHAGE_Stx2_c_1717: transposase; pRALTA_0138; phage(gi209447153) | 2e-116 | Click |
| 5 | complement(121726..122718) | PHAGE_Iodoba_phiPLPE: gp77 putative tail-fiber protein; pRALTA_0139; phage(gi197085691) | 1e-07 | Click |
| 6 | 123135..124493 | PHAGE_Entero_P1: Cre; pRALTA_0140; phage(gi46401628) | 1e-08 | Click |
| 7 | complement(124526..127450) | PROPHAGE_Xantho_33913: Tn5041 transposase; pRALTA_0141; phage(gi21231545) | 1e-14 | Click |
| 8 | 127940..128305 | hypothetical protein; pRALTA_0143 | N/A | Click |
| 9 | 128489..129256 | PHAGE_Burkho_KS14: gp8; pRALTA_0144; phage(gi327198277) | 9e-32 | Click |
| 10 | 129253..129585 | hypothetical protein; pRALTA_0145 | N/A | Click |
| 11 | 129906..130853 | integrase/recombinase; pRALTA_0147 | N/A | Click |
| 12 | 144412..144423 | attR AGACGCCCGAAA | N/A | Click |
Region 2, total : 22 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 486198..486209 | attL GCTGGCTCGACG | N/A | Click |
| 2 | complement(495206..495307) | putative phage integrase fragment; pRALTA_0600 | N/A | Click |
| 3 | complement(495276..495587) | putative phage integrase fragment; pRALTA_0601 | N/A | Click |
| 4 | complement(495587..496927) | PROPHAGE_Escher_MG1655: IS4 transposase; pRALTA_0602; phage(gi16132099) | 2e-07 | Click |
| 5 | complement(497975..499075) | PHAGE_Burkho_KS5: ISBmu23 transposase; pRALTA_0607; phage(gi327198044) | 2e-06 | Click |
| 6 | 499221..499478 | hypothetical protein; pRALTA_0608 | N/A | Click |
| 7 | 499718..500272 | PROPHAGE_Escher_CFT073: transposase; pRALTA_0611; phage(gi26248360) | 4e-36 | Click |
| 8 | 500456..500467 | attL CGAATGCGGCTG | N/A | Click |
| 9 | complement(501395..502744) | PHAGE_Prochl_P_SSP3: integrase; pRALTA_0614; phage(gi472343224) | 4e-06 | Click |
| 10 | complement(502760..503059) | integrase fragment; pRALTA_0615 | N/A | Click |
| 11 | complement(503193..503960) | PHAGE_Staphy_phi5967PVL: hypothetical protein; pRALTA_0616; phage(gi431810260) | 3e-07 | Click |
| 12 | 504498..504686 | hypothetical protein; pRALTA_0617 | N/A | Click |
| 13 | 504835..504846 | attR CGAATGCGGCTG | N/A | Click |
| 14 | complement(505383..506945) | hypothetical protein; pRALTA_0620 | N/A | Click |
| 15 | complement(507210..508460) | integrase/recombinase; pRALTA_0621 | N/A | Click |
| 16 | complement(508561..508938) | putative toxin of toxin-antitoxin stability system, PIN domain; pRALTA_0622 | N/A | Click |
| 17 | complement(508938..509174) | putative Antitoxin of toxin-antitoxin system, phd type; pRALTA_0623 | N/A | Click |
| 18 | 509360..510427 | PHAGE_Helico_2: hypothetical protein; pRALTA_0624; phage(gi370703038) | 5e-14 | Click |
| 19 | complement(510730..511452) | Mg(2+) transport ATPase protein C; pRALTA_0626 | N/A | Click |
| 20 | complement(511517..512815) | PHAGE_Plankt_PaV_LD: ABC transporter; pRALTA_0627; phage(gi371496158) | 4e-27 | Click |
| 21 | complement(512829..514565) | putative Binding-protein-dependent transporter, inner membrane component; pRALTA_0628 | N/A | Click |
| 22 | complement(514772..516160) | putative porin, OprB partial C-trem domain; pRALTA_0630 | N/A | Click |
| 23 | 516462..516791 | hypothetical protein; pRALTA_0631 | N/A | Click |
| 24 | complement(516758..517930) | PHAGE_Mycoba_BPs: integrase; pRALTA_0632; phage(gi189043119) | 2e-08 | Click |
| 25 | 518095..519042 | PHAGE_Helico_2: hypothetical protein; pRALTA_0633; phage(gi370703038) | 4e-12 | Click |
| 26 | 523141..523152 | attR GCTGGCTCGACG | N/A | Click |
Region 3, total : 13 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 538003..540927 | PROPHAGE_Xantho_33913: Tn5041 transposase; pRALTA_0655; phage(gi21231545) | 1e-14 | Click |
| 2 | 539792..539803 | attL ACGCCGCGCTGC | N/A | Click |
| 3 | complement(540960..542318) | PHAGE_Entero_P1: Cre; pRALTA_0656; phage(gi46401628) | 1e-08 | Click |
| 4 | 542735..543727 | PHAGE_Xantho_CP2: hypothetical protein; pRALTA_0657; phage(gi448245209) | 8e-08 | Click |
| 5 | 543825..544583 | PHAGE_Helico_2: hypothetical protein; pRALTA_0658; phage(gi370703038) | 1e-14 | Click |
| 6 | 544708..545955 | PHAGE_Equid__4: large tegument protein; pRALTA_0659; phage(gi9629749) | 4e-14 | Click |
| 7 | 546103..546393 | hypothetical protein; pRALTA_0660 | N/A | Click |
| 8 | 546443..546981 | tRNA | N/A | Click |
| 9 | 547004..548128 | PHAGE_Marseillevirus: putative nuclease; pRALTA_0661; phage(gi284504209) | 6e-06 | Click |
| 10 | 548125..549255 | putative ATPase; putative exported protein; pRALTA_0662 | N/A | Click |
| 11 | 549258..550229 | hypothetical protein; pRALTA_0664 | N/A | Click |
| 12 | 550484..550918 | hypothetical protein; pRALTA_0665 | N/A | Click |
| 13 | 550902..551156 | hypothetical protein; pRALTA_0666 | N/A | Click |
| 14 | 551173..552333 | hypothetical protein; pRALTA_0667 | N/A | Click |
| 15 | 552538..552549 | attR ACGCCGCGCTGC | N/A | Click |
| 16 | 552570..553616 | PHAGE_Xantho_CP2: hypothetical protein; pRALTA_0668; phage(gi448245209) | 3e-10 | Click |