Definition Lactobacillus plantarum WCFS1, complete genome.
Accession NC_004567
Length 3,308,274
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 59 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 589962..589975  attL    GTTACCCTTAAGTA  N/A  Click
2 complement(590128..591330)  PHAGE_Strept_5: putative phage integrase; lp_0624; phage(gi28876436)  2e-42  Click
3 complement(591410..591480)  tRNA  N/A  Click
4 complement(591510..592673)  PHAGE_Strept_3: putative mitogenic factor; lp_0625; phage(gi28876265)  1e-23  Click
5 complement(593037..593120)  tRNA  N/A  Click
6 complement(593163..593339)  prophage Lp1 protein 4; lp_0627  N/A  Click
7 complement(593365..593450)  tRNA  N/A  Click
8 complement(593481..594527)  PHAGE_Lactob_Lj965: putative superinfection immunity protein; lp_0628; phage(gi41179219)  6e-29  Click
9 complement(594557..594925)  PHAGE_Bacill_phiAGATE: putative tail lysin 2; lp_0629; phage(gi448260828)  7e-05  Click
10 complement(594998..595414)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep06; lp_0630; phage(gi23455774)  2e-08  Click
11 complement(595426..595788)  PHAGE_Lactob_phig1e: repressor; lp_0631; phage(gi23455773)  8e-17  Click
12 595961..596191  PHAGE_Lister_B054: gp42; lp_0632; phage(gi157325326)  2e-05  Click
13 complement(596264..596578)  prophage Lp1 protein 10; lp_0633  N/A  Click
14 complement(596616..596852)  prophage Lp1 protein 11; lp_0634  N/A  Click
15 596999..597199  PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; lp_0635; phage(gi397912660)  2e-06  Click
16 597358..597540  prophage Lp1 protein 13; lp_0636  N/A  Click
17 597601..598155  PHAGE_Lactob_phig1e: hypothetical protein phig1ep61; lp_0637; phage(gi23455781)  2e-101  Click
18 598161..598445  prophage Lp1 protein 15; lp_0638  N/A  Click
19 598766..599203  prophage Lp1 protein 17; lp_0640  N/A  Click
20 599200..600087  PHAGE_Lactob_LF1: RecT protein; lp_0641; phage(gi418489428)  7e-68  Click
21 600011..600871  PHAGE_Lactob_LF1: hypothetical protein; lp_0642; phage(gi418489429)  5e-63  Click
22 600953..601885  PHAGE_Entero_phiFL1A: recombinase; lp_0643; phage(gi281416341)  6e-50  Click
23 601882..602169  prophage Lp1 protein 21; lp_0644  N/A  Click
24 602166..602696  PHAGE_Mycoba_LeBron: gp117; lp_0645; phage(gi304361052)  1e-07  Click
25 602693..603226  PHAGE_Lactob_phig1e: hypothetical protein phig1ep52; lp_0646; phage(gi23455787)  6e-38  Click
26 603219..603638  PHAGE_Lister_B054: gp57; lp_0647; phage(gi157325341)  9e-26  Click
27 603635..603865  PHAGE_Lactob_phig1e: hypothetical protein phig1ep50; lp_0648; phage(gi23455788)  7e-26  Click
28 603868..603999  PHAGE_Lactob_phig1e: hypothetical protein phig1ep49; lp_0649; phage(gi23455789)  2e-17  Click
29 603996..604367  prophage Lp1 protein 27; lp_0650  N/A  Click
30 604367..604474  prophage Lp1 protein 28; lp_0651  N/A  Click
31 604488..604670  prophage Lp1 protein 29; lp_0652  N/A  Click
32 604663..605010  PHAGE_Lactob_phig1e: possible sensor protein; lp_0653; phage(gi23455793)  3e-59  Click
33 605007..605447  PHAGE_Lactob_LP65: hypothetical protein LP65_gp009; lp_0654; phage(gi56693057)  5e-16  Click
34 605444..605611  PHAGE_Lactob_Sha1: LP1-like protein; lp_0655; phage(gi418489797)  7e-16  Click
35 605739..606200  PHAGE_Lactob_phig1e: hypothetical protein phig1ep41; lp_0656; phage(gi23455797)  2e-22  Click
36 606324..606396  tRNA  N/A  Click
37 606572..607354  prophage Lp1 protein 35; lp_0658  N/A  Click
38 607422..607724  prophage Lp1 protein 36; lp_0659  N/A  Click
39 607764..608360  PHAGE_Lactob_phig1e: putative terminase small subunit; lp_0660; phage(gi23455798)  3e-19  Click
40 608344..609630  PHAGE_Staphy_IPLA88: putative terminase large subunit; lp_0661; phage(gi215401206)  2e-112  Click
41 609620..611278  PHAGE_Entero_phiFL2A: portal protein; lp_0662; phage(gi281416526)  2e-69  Click
42 611278..612222  PHAGE_Strept_1: minor head protein; lp_0663; phage(gi39653715)  7e-10  Click
43 612330..612977  PHAGE_Staphy_187: ORF021; lp_0664; phage(gi66395236)  9e-13  Click
44 612991..614061  PHAGE_Entero_phiFL3A: coat protein; lp_0665; phage(gi281416261)  6e-48  Click
45 614076..614441  PHAGE_Lactoc_ul36: hypothetical protein ul36_44; lp_0666; phage(gi21716115)  5e-09  Click
46 614446..614769  prophage Lp1 protein 44; lp_0667  N/A  Click
47 614759..615313  prophage Lp1 protein 45; lp_0668  N/A  Click
48 615314..615700  prophage Lp1 protein 46; lp_0669  N/A  Click
49 615712..616299  prophage Lp1 protein 47; lp_0670  N/A  Click
50 616317..616829  PHAGE_Staphy_phiETA3: hypothetical protein phiETA3_gp53; lp_0671; phage(gi122891837)  6e-05  Click
51 616898..617134  prophage Lp1 protein 49; lp_0672  N/A  Click
52 617134..621138  PHAGE_Lactob_Sha1: minor tail protein; lp_0673; phage(gi418489814)  2e-87  Click
53 621132..621869  PHAGE_Strept_5093: hypothetical protein st5093phage_28; lp_0674; phage(gi238801908)  1e-37  Click
54 621869..623743  PHAGE_Clostr_phi8074_B1: putative phage tail protein; lp_0675; phage(gi431810378)  9e-27  Click
55 623748..624740  PHAGE_Staphy_vB_SepiS_phiIPLA5: virion associated hydrolase; lp_0676; phage(gi399528912)  2e-40  Click
56 624755..625369  PHAGE_Lactob_phig1e: minor capsid protein; lp_0677; phage(gi23455814)  4e-16  Click
57 625375..626115  PHAGE_Staphy_187: ORF006; lp_0678; phage(gi66395221)  1e-08  Click
58 626116..626436  prophage Lp1 protein 56; lp_0679  N/A  Click
59 626436..626612  prophage Lp1 protein 57; lp_0680  N/A  Click
60 626590..627738  PHAGE_Lactob_phig1e: lysin; lp_0681; phage(gi254733530)  6e-60  Click
61 627739..628035  prophage Lp1 protein 59; lp_0682  N/A  Click
62 628022..628381  PHAGE_Staphy_IPLA88: putative holin; lp_0683; phage(gi215401230)  1e-06  Click
63 complement(629228..629434)  prophage Lp1 protein 61; lp_0684  N/A  Click
64 631770..631783  attR    GTTACCCTTAAGTA  N/A  Click
65 complement(632146..633123)  PHAGE_Strept_3: putative mitogenic factor; lp_0688; phage(gi28876265)  5e-09  Click
Region 2, total : 82 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2156166..2156177  attL    TTTTGATTACTT  N/A  Click
2 complement(2157270..2159159)  PHAGE_Bacill_SPBc2: ABC transporter; lp_2394; phage(gi9630145)  3e-38  Click
3 complement(2159159..2160889)  PHAGE_Bacill_SPBc2: ABC transporter; lp_2395; phage(gi9630145)  6e-23  Click
4 complement(2161117..2161509)  hypothetical protein; lp_2396  N/A  Click
5 2161732..2162583  prophage Lp2 protein 59; xylanase/chitin deacetylase (putative); lp_2397  N/A  Click
6 complement(2163940..2164317)  PHAGE_Staphy_phiMR11: putative holin protein; lp_2399; phage(gi162290172)  1e-06  Click
7 complement(2164304..2164600)  prophage Lp2 protein 57; lp_2400  N/A  Click
8 complement(2164601..2165755)  PHAGE_Lactob_phig1e: lysin; lp_2401; phage(gi254733530)  9e-72  Click
9 complement(2165767..2165886)  PHAGE_Lactob_Sha1: endolysin; lp_2402; phage(gi418489821)  3e-10  Click
10 complement(2165898..2166137)  prophage Lp2 protein 54; lp_2403  N/A  Click
11 complement(2166134..2167309)  PHAGE_Lactob_Sha1: prophage Lp2 protein 53-like protein; lp_2404; phage(gi418489820)  5e-70  Click
12 complement(2167331..2169526)  prophage Lp2 protein 52; lp_2405  N/A  Click
13 complement(2169516..2169773)  prophage Lp2 protein 51; lp_2406  N/A  Click
14 complement(2169770..2170951)  PHAGE_Lister_A118: gp18; lp_2407; phage(gi16798801)  2e-23  Click
15 complement(2170948..2171844)  PHAGE_Lister_B025: gp15; lp_2408; phage(gi157325232)  1e-19  Click
16 complement(2171854..2175927)  PHAGE_Lactob_phiAT3: putative minor tail protein; lp_2409; phage(gi48697271)  1e-94  Click
17 complement(2175927..2176211)  prophage Lp2 protein 47; lp_2410  N/A  Click
18 complement(2176256..2176744)  PHAGE_Staphy_vB_SepiS_phiIPLA5: tail protein; lp_2411; phage(gi399528908)  4e-05  Click
19 complement(2176778..2177344)  prophage Lp2 protein 45; lp_2412  N/A  Click
20 complement(2177356..2177742)  prophage Lp2 protein 44; lp_2413  N/A  Click
21 complement(2177744..2178298)  prophage Lp2 protein 43; lp_2414  N/A  Click
22 complement(2178288..2178626)  prophage Lp2 protein 42; lp_2415  N/A  Click
23 complement(2178616..2178981)  PHAGE_Entero_phiFL1A: hypothetical protein; lp_2416; phage(gi281416369)  2e-07  Click
24 2178988..2178999  attL    CCTCCTGACTAG  N/A  Click
25 complement(2178996..2180054)  PHAGE_Entero_phiFL3A: coat protein; lp_2417; phage(gi281416261)  2e-51  Click
26 complement(2180071..2180718)  PHAGE_Staphy_187: ORF021; lp_2418; phage(gi66395236)  3e-12  Click
27 complement(2180825..2181769)  PHAGE_Entero_phiFL2A: phage head protein; lp_2419; phage(gi281416528)  1e-08  Click
28 complement(2181772..2183424)  PHAGE_Entero_phiFL2A: portal protein; lp_2420; phage(gi281416526)  2e-67  Click
29 complement(2183414..2184115)  PHAGE_Staphy_IPLA88: putative terminase large subunit; lp_2421; phage(gi215401206)  6e-40  Click
30 complement(2184054..2184713)  PHAGE_Staphy_phiMR25: putative terminase, large subunit; lp_2422; phage(gi189427164)  5e-68  Click
31 complement(2184918..2185427)  PHAGE_Lactob_phig1e: putative terminase small subunit; lp_2423; phage(gi23455798)  1e-51  Click
32 complement(2185625..2185888)  PHAGE_Acinet_133: hypothetical protein; lp_2424; phage(gi326536185)  1e-15  Click
33 complement(2185857..2186036)  PHAGE_Lactob_Sha1: HNH nuclease; lp_2425; phage(gi418489799)  3e-10  Click
34 complement(2186916..2186987)  tRNA  N/A  Click
35 complement(2187057..2187129)  tRNA  N/A  Click
36 complement(2187251..2187712)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep41; lp_2426; phage(gi23455797)  1e-22  Click
37 complement(2187791..2187991)  prophage Lp2 protein 30; lp_2427  N/A  Click
38 complement(2188022..2188351)  prophage Lp2 protein 29; lp_2428  N/A  Click
39 complement(2188385..2188516)  prophage Lp2 protein 28; lp_2429  N/A  Click
40 complement(2188531..2188842)  prophage Lp2 protein 27; lp_2430  N/A  Click
41 complement(2188915..2189391)  PHAGE_Lactob_phig1e: possible sensor protein; lp_2431; phage(gi23455793)  2e-08  Click
42 complement(2189540..2189707)  PHAGE_Lactob_Sha1: hypothetical protein; lp_2432; phage(gi418489791)  5e-09  Click
43 complement(2189700..2190080)  PHAGE_Lister_A118: gp63; lp_2433; phage(gi16798850)  1e-29  Click
44 complement(2190077..2190595)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep52; lp_2434; phage(gi23455787)  1e-36  Click
45 complement(2190592..2191122)  PHAGE_Mycoba_LeBron: gp117; lp_2435; phage(gi304361052)  1e-07  Click
46 complement(2191119..2191406)  prophage Lp2 protein 21; lp_2436  N/A  Click
47 complement(2191403..2192380)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep54; lp_2437; phage(gi254854754)  2e-38  Click
48 complement(2192478..2193143)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep56; lp_2439; phage(gi23455784)  1e-72  Click
49 complement(2193146..2193808)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep57; lp_2440; phage(gi23455783)  6e-110  Click
50 complement(2193815..2194324)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep58; lp_2441; phage(gi254854755)  3e-58  Click
51 2194512..2194943  prophage Lp2 protein 14; lp_2443  N/A  Click
52 complement(2195192..2195704)  prophage Lp2 protein 13; lp_2444  N/A  Click
53 complement(2195772..2196077)  prophage Lp2 protein 12; lp_2445  N/A  Click
54 complement(2196119..2196259)  prophage Lp2 protein 11; lp_2446  N/A  Click
55 complement(2196256..2196483)  PHAGE_Geobac_GBSV1: immunity repressor protein; lp_2447; phage(gi115334658)  1e-06  Click
56 2196612..2196974  PHAGE_Lactob_phig1e: repressor; lp_2448; phage(gi23455773)  6e-15  Click
57 2197016..2197399  PHAGE_Lactob_phig1e: hypothetical protein phig1ep06; lp_2449; phage(gi23455774)  4e-09  Click
58 2197426..2197761  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1464; lp_2450; phage(gi41179289)  2e-24  Click
59 2197887..2198948  PHAGE_Halovi_HF1: putative methyltransferase-endonuclease; lp_2451; phage(gi32453891)  1e-05  Click
60 2199001..2199086  tRNA  N/A  Click
61 2199112..2199288  prophage Lp2 protein 5; lp_2452  N/A  Click
62 2199331..2199414  tRNA  N/A  Click
63 2199699..2199772  tRNA  N/A  Click
64 2199778..2199848  tRNA  N/A  Click
65 2199896..2201644  prophage Lp2 protein 4; lp_2453  N/A  Click
66 2201698..2202612  PHAGE_Synech_S_MbCM6: putative cytosine-specific protein; lp_2454; phage(gi418487528)  2e-06  Click
67 2202699..2203820  PHAGE_Lactob_phig1e: integrase; lp_2455; phage(gi23455777)  6e-38  Click
68 complement(2204049..2204121)  tRNA  N/A  Click
69 complement(2204171..2204377)  prophage Lp3 protein 24; lp_2457  N/A  Click
70 2204512..2204584  tRNA  N/A  Click
71 complement(2204797..2205102)  prophage Lp3 protein 21; lp_2460  N/A  Click
72 complement(2205185..2205565)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp49; lp_2461; phage(gi195661249)  3e-06  Click
73 complement(2205707..2205976)  PHAGE_Strept_YMC_2011: putative DNA packaging protein; lp_2462; phage(gi399498724)  3e-06  Click
74 complement(2206071..2207573)  PHAGE_Entero_EFRM31: major capsid protein; lp_2463; phage(gi327198115)  3e-44  Click
75 complement(2207595..2208695)  PHAGE_Staphy_StB20: portal HK97 family; lp_2464; phage(gi431809767)  1e-51  Click
76 complement(2208850..2210553)  PHAGE_Lactob_LF1: bacteriophage terminase large subunit; lp_2466; phage(gi418489385)  2e-114  Click
77 complement(2210550..2211023)  PHAGE_Strept_2: hypothetical protein SpyM3_0947; lp_2467; phage(gi28876231)  1e-14  Click
78 complement(2211806..2212195)  PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; lp_2469; phage(gi9635713)  5e-21  Click
79 complement(2212188..2212526)  PHAGE_Lactob_JCL1032: putative head-tail adapter; lp_2470; phage(gi418489120)  2e-08  Click
80 complement(2212513..2212704)  prophage Lp3 protein 10; lp_2471  N/A  Click
81 complement(2212726..2213199)  prophage Lp3 protein 9; lp_2472  N/A  Click
82 complement(2213345..2214739)  PHAGE_Staphy_2638A: ORF003; lp_2473; phage(gi66395453)  7e-71  Click
83 complement(2214739..2215539)  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; lp_2474; phage(gi13095885)  6e-20  Click
84 complement(2215536..2215790)  prophage Lp3 protein 6; lp_2475  N/A  Click
85 complement(2215911..2216018)  prophage Lp3 protein 5; lp_2476  N/A  Click
86 complement(2216061..2216249)  PHAGE_Lactob_Sha1: prophage Lp3 protein 4-like protein; lp_2477; phage(gi418489838)  3e-06  Click
87 2216441..2216452  attR    CCTCCTGACTAG  N/A  Click
88 2216566..2217132  PHAGE_Lactob_AQ113: putative transcriptional regulator; lp_2479; phage(gi446730276)  2e-08  Click
89 2217185..2218342  PROPHAGE_Oceano_HTE831: integrase; lp_2480; phage(gi23097608)  6e-65  Click
90 2218833..2219066  hypothetical protein; lp_2482  N/A  Click
91 2219091..2219363  hypothetical protein; lp_2483  N/A  Click
92 complement(2219412..2219897)  transcription regulator (putative); lp_2484  N/A  Click
93 complement(2219952..2221928)  PHAGE_Human__8: LANA; lp_2485; phage(gi139472804)  4e-08  Click
94 2225484..2225495  attR    TTTTGATTACTT  N/A  Click
Region 3, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2983800..2983811  attL    TTCATCAAAAGT  N/A  Click
2 complement(2998563..2998805)  prophage Lp4 protein 13; lp_3377  N/A  Click
3 complement(2998911..2999324)  prophage Lp4 protein 12; lp_3378  N/A  Click
4 complement(2999326..2999724)  PHAGE_Strept_M102: hypothetical protein M102_gp29; lp_3379; phage(gi242345600)  8e-09  Click
5 complement(2999780..2999956)  prophage Lp4 protein 10; lp_3380  N/A  Click
6 complement(2999983..3000441)  prophage Lp4 protein 9; lp_3381  N/A  Click
7 complement(3000950..3002452)  PHAGE_Lactoc_bIL310: helicase; lp_3382; phage(gi13095886)  4e-89  Click
8 complement(3002467..3003246)  PHAGE_Strept_Sfi19: putative replication protein; lp_3383; phage(gi9632925)  2e-22  Click
9 complement(3003259..3003480)  prophage Lp4 protein 6; lp_3384  N/A  Click
10 complement(3003473..3003901)  prophage Lp4 protein 5; lp_3385  N/A  Click
11 complement(3004213..3004509)  prophage Lp4 protein 4; lp_3387  N/A  Click
12 complement(3004648..3005337)  PHAGE_Lactoc_bIL311: Orf3; lp_3388; phage(gi13095661)  9e-22  Click
13 3005702..3006082  PHAGE_Bacill_phIS3501: transcriptional regulator XRE family protein; lp_3389; phage(gi422934302)  5e-06  Click
14 3006114..3007280  PROPHAGE_Oceano_HTE831: integrase; lp_3390; phage(gi23097608)  1e-56  Click
15 3011137..3011148  attR    TTCATCAAAAGT  N/A  Click