| Definition | Clostridium difficile complete genome, strain M120. |
|---|---|
| Accession | FN665653 |
| Length | 4,047,729 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 273285..273983 | PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00229; phage(gi326784002) | 2e-48 | Click |
| 2 | 273995..275362 | PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00230; phage(gi155370133) | 3e-22 | Click |
| 3 | 275356..276432 | PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00231; phage(gi472340860) | 8e-64 | Click |
| 4 | 276426..277019 | PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00232; phage(gi134288807) | 1e-06 | Click |
| 5 | 277012..278544 | PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00233; phage(gi61806062) | 4e-61 | Click |
| 6 | 278555..279805 | phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00234 | 0.0 | Click |
| 7 | 279830..283636 | PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00235; phage(gi149882852) | 1e-33 | Click |
| 8 | 283840..284712 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00236; phage(gi448260370) | 4e-35 | Click |
| 9 | 284821..285690 | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00237; phage(gi448260372) | 9e-97 | Click |
| 10 | 285739..286296 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00238; phage(gi448260371) | 4e-46 | Click |
| 11 | 286334..287317 | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00239; phage(gi448260373) | 2e-71 | Click |
| 12 | 287355..288023 | PHAGE_Pseudo_PB1: putative tail protein containing transglycosylase; PP_00240; phage(gi219523908) | 1e-16 | Click |
| 13 | 288032..288460 | hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00241 | 1e-71 | Click |
| 14 | 288484..288798 | flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00242 | 1e-49 | Click |
| 15 | 288950..289225 | negative regulator of flagellin synthesis (anti-sigma-d factor) [Clostridium difficile R20291] gi|260685605|ref|YP_003216738.1|; PP_00243 | 1e-42 | Click |
| 16 | 289230..289646 | flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00244 | 3e-68 | Click |
| 17 | 289664..290974 | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00245; phage(gi9631364) | 3e-05 | Click |
Region 2, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 449497..449509 | attL GGTAAATCTAAGG | N/A | Click |
| 2 | 460970..461377 | PHAGE_Bacill_Fah: holin; PP_00403; phage(gi89152494) | 3e-27 | Click |
| 3 | 461377..462078 | PHAGE_Propio_PA6: gp20; PP_00404; phage(gi148727102) | 4e-05 | Click |
| 4 | 462214..462444 | hypothetical protein Teth514_1271 [Thermoanaerobacter sp. X514] gi|167039915|ref|YP_001662900.1|; PP_00405 | 2e-26 | Click |
| 5 | 462497..464062 | PHAGE_Bacill_Fah: site-specific serine recombinase; PP_00406; phage(gi89152504) | 5e-40 | Click |
| 6 | 464063..464476 | PHAGE_Deep_s_D6E: recombinase; PP_00407; phage(gi423262352) | 1e-05 | Click |
| 7 | 464480..466051 | PHAGE_Bacill_Gamma: site-specific recombinase; PP_00408; phage(gi77020163) | 2e-28 | Click |
| 8 | 466161..466406 | hypothetical protein [Clostridium clariflavum DSM 19732] gi|374297833|ref|YP_005048024.1|; PP_00409 | 4e-34 | Click |
| 9 | 466509..467378 | nucleotidyltransferase [Streptococcus mitis B6] gi|289168545|ref|YP_003446814.1|; PP_00410 | 9e-167 | Click |
| 10 | 467359..468093 | PHAGE_Microm_12T: hypothetical protein; PP_00411; phage(gi472342811) | 6e-08 | Click |
| 11 | 480671..480683 | attR GGTAAATCTAAGG | N/A | Click |
Region 3, total : 30 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1474309..1474509 | PHAGE_Lactoc_bIL312: Csp; PP_01338; phage(gi13095918) | 6e-17 | Click |
| 2 | 1474930..1475358 | regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01339 | 4e-77 | Click |
| 3 | complement(1475501..1476256) | peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01340 | 6e-137 | Click |
| 4 | complement(1476377..1476793) | hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01341 | 3e-71 | Click |
| 5 | complement(1476957..1477463) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01342; phage(gi209901280) | 3e-10 | Click |
| 6 | complement(1477545..1477865) | PHAGE_Geobac_GBSV1: immunity repressor protein; PP_01343; phage(gi115334658) | 2e-13 | Click |
| 7 | 1478034..1478231 | PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01344; phage(gi17426238) | 6e-06 | Click |
| 8 | 1478335..1478775 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01345; phage(gi90592709) | 3e-37 | Click |
| 9 | 1479024..1479467 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01346; phage(gi90592649) | 4e-24 | Click |
| 10 | 1479472..1480536 | PHAGE_Clostr_phiMMP04: tail sheath; PP_01347; phage(gi414090451) | 5e-69 | Click |
| 11 | 1480550..1480978 | PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01348; phage(gi414090452) | 8e-08 | Click |
| 12 | 1481092..1481538 | PHAGE_Clostr_CD119: XkdN protein; PP_01349; phage(gi90592652) | 2e-15 | Click |
| 13 | 1481616..1481732 | hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01350 | 1e-14 | Click |
| 14 | 1481732..1484185 | PHAGE_Clostr_phiMMP04: tail tape measure; PP_01351; phage(gi414090455) | 1e-22 | Click |
| 15 | 1484185..1484607 | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01352; phage(gi414090456) | 1e-47 | Click |
| 16 | 1484889..1486418 | PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01353; phage(gi414090458) | 6e-122 | Click |
| 17 | 1486434..1486760 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01354; phage(gi414090459) | 1e-54 | Click |
| 18 | 1486760..1487188 | PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01355; phage(gi414090460) | 3e-63 | Click |
| 19 | 1487181..1488233 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01356; phage(gi414090461) | 3e-140 | Click |
| 20 | 1488230..1488928 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01357; phage(gi414090462) | 4e-52 | Click |
| 21 | 1488929..1489915 | PHAGE_Clostr_phiMMP04: tail fiber; PP_01358; phage(gi414090463) | 1e-48 | Click |
| 22 | 1489937..1495114 | PHAGE_Bathyc_BpV1: hypothetical protein; PP_01359; phage(gi313768166) | 3e-17 | Click |
| 23 | 1495131..1495484 | hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01360 | 5e-13 | Click |
| 24 | 1495747..1496007 | PHAGE_Clostr_phiCD38_2: putative holin; PP_01361; phage(gi333798129) | 4e-37 | Click |
| 25 | complement(1496218..1496673) | hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01362 | 1e-78 | Click |
| 26 | complement(1496901..1497320) | PHAGE_Strept_3: putative cI-like repressor; PP_01363; phage(gi28876313) | 8e-08 | Click |
| 27 | 1497616..1497825 | PHAGE_Bacill_BCJA1c: cro; PP_01364; phage(gi56694875) | 4e-08 | Click |
| 28 | 1497857..1498066 | hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01365 | 9e-32 | Click |
| 29 | complement(1498283..1498681) | PHAGE_Lister_A118: putative repressor protein; PP_01366; phage(gi16798819) | 3e-09 | Click |
| 30 | complement(1499099..1501591) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01367; phage(gi9631364) | 4e-11 | Click |
Region 4, total : 16 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2526862..2527554) | PHAGE_Feldma_virus: putative sensor histidine kinase; PP_02332; phage(gi197322366) | 1e-09 | Click |
| 2 | complement(2528140..2528274) | PHAGE_Clostr_phiC2: putative transcriptional regulator; PP_02333; phage(gi134287378) | 2e-13 | Click |
| 3 | 2528419..2528652 | putative HTH-type transcriptional regulator [Bifidobacterium bifidum BGN4] gi|390936393|ref|YP_006393952.1|; PP_02334 | 2e-27 | Click |
| 4 | 2528636..2529049 | hypothetical; PP_02335 | N/A | Click |
| 5 | 2529068..2529268 | hypothetical; PP_02336 | N/A | Click |
| 6 | 2529646..2529963 | hypothetical protein CDR20291_1077 [Clostridium difficile R20291] gi|260686442|ref|YP_003217575.1|; PP_02337 | 2e-48 | Click |
| 7 | complement(2530024..2531631) | PHAGE_Bacill_36: low copy number virion structural protein; PP_02338; phage(gi156564190) | 8e-14 | Click |
| 8 | complement(2531930..2532187) | PHAGE_Clostr_phiMMP02: endolysin; PP_02339; phage(gi414090399) | 6e-39 | Click |
| 9 | complement(2532238..2532459) | PROPHAGE_Lactoc_Il1403: IS1077F transposase; PP_02340; phage(gi15674057) | 3e-05 | Click |
| 10 | 2532821..2533171 | hypothetical protein CDR20291_2194 [Clostridium difficile R20291] gi|260687545|ref|YP_003218679.1|; PP_02341 | 6e-57 | Click |
| 11 | 2533173..2533373 | PHAGE_Lactoc_phiLC3: phage repressor; PP_02342; phage(gi45597387) | 2e-05 | Click |
| 12 | 2533799..2533975 | hypothetical protein CDR20291_1271 [Clostridium difficile R20291] gi|260686636|ref|YP_003217769.1|; PP_02343 | 5e-25 | Click |
| 13 | 2534200..2534400 | PHAGE_Lactoc_bIL312: Csp; PP_02344; phage(gi13095918) | 7e-21 | Click |
| 14 | 2535011..2535823 | ABC transporter substrate-binding protein [Clostridium difficile R20291] gi|260687550|ref|YP_003218684.1|; PP_02345 | 2e-140 | Click |
| 15 | 2536145..2536624 | ABC transporter permease [Clostridium difficile R20291] gi|260687551|ref|YP_003218685.1|; PP_02346 | 2e-82 | Click |
| 16 | 2536626..2537321 | PHAGE_Plankt_PaV_LD: ABC transporter; PP_02347; phage(gi371496158) | 2e-17 | Click |