gi|291482100|ref|FN665653| Clostridium difficile complete genome, strain M120. [asmbl_id: NC_000000].4047729, gc%: 28.67% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 273285..273983 PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00229; phage(gi326784002) 2e-48 MLLYEGKAKQVYSTDNENEYVVYYKDDATAFNGEKKAEISSKGILNNKISTIIFEMLKENNINTHFIKSL 273995..275362 PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00230; phage(gi155370133) 3e-22 MCGVLGIYSNKDVTKELYYSLYSMQHRGQESCGLALLDDGEIKYKKDMGLVGDVFKESELSKLKGNIGIG 275356..276432 PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00231; phage(gi472340860) 8e-64 MLTYKESGVDIDEGNRAVDLIKGKIKGTYDGNVVGDLGNFSGLYSLKDFVGMKEPVLLASTDGVGTKLKI 276426..277019 PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00232; phage(gi134288807) 1e-06 MLNIGVLISGGGTNLQAVIDGTESGEIKGQVKVVISSKQDAYGLERAKNHNIKAICETDEDKIIEILKEN 277012..278544 PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00233; phage(gi61806062) 4e-61 MSKRALISVTDKTGVVEFAKELNKLDYEIISTGNTFKTLKENGVNVMQVEDVTNFPEILDGRVKTLNPYI 278555..279805 phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00234 0.0 MKILVVGGGGREHAICWKLSKEKNVEKIYCAPGNAGIANVAECVNIGDTNIEELLKFAKENEIGLTIVGP 279830..283636 PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00235; phage(gi149882852) 1e-33 MLNTENKDSMVRRVLVEKREGFDLEAKALKKDLVESLHIDNIENLRILNRYDVEGISEEVYENAAKTIFS 283840..284712 PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00236; phage(gi448260370) 4e-35 MKILITGSNGQLGKELVNQLEAINQSMSQPKYAILATTRNDFDIYNQTNVDNFILNNKPDVVVNCAAYTK 284821..285690 PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00237; phage(gi448260372) 9e-97 MKGIILAGGSGTRLYPITKCISKQTLPIYDKPMIYYPMSVLMLAGIQDILIISTPRDIKAFEELFGDGSS 285739..286296 PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00238; phage(gi448260371) 4e-46 MGKINVIKTKIEGLYIVEPSVFCDERGYFMESYNKRDFIEQGLDMCFIQDNESSSRKGVLRGMHFQVRYP 286334..287317 PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00239; phage(gi448260373) 2e-71 MKKILITGGAGFIGSNFVHYMLNKYVDYFIVNLDLLTYAGNLETLIEIQDNSNYKFVRGDISNREQMYKL 287355..288023 PHAGE_Pseudo_PB1: putative tail protein containing transglycosylase; PP_00240; phage(gi219523908) 1e-16 LNEISSLINILALTQLSGSNNTNQCNCTYNNSSGFDMIMMTLLKALSQNNQHTSNGYNISSNSENLFNEL 288032..288460 hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00241 1e-71 MGINIDKLKISPSINIEVKKLKENNKFSDRLNSLKQSSSLEDIKRNLESVKKAGERLVLTQNYGDISIYK 288484..288798 flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00242 1e-49 MNSKKEDIYELNFGQLIEEQSGIIEENQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKL 288950..289225 negative regulator of flagellin synthesis (anti-sigma-d factor) [Clostridium difficile R20291] gi|260685605|ref|YP_003216738.1|; PP_00243 1e-42 MDIKNVSSNIVVNNYLKNTSGVKKVEDVKKINKTDKIELSKFAKEMASVSNMSDESIRNKKVDEIKNALE 289230..289646 flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00244 3e-68 MITDLKVIMYEEKNIISKMMELLKEQFDYIVEKDLENLNMLNPKLEDISRELASIEIKRRQLFGDDISMS 289664..290974 PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00245; phage(gi9631364) 3e-05 MAGLFSILNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTGVHV #### region 2 #### 449497..449509 attL N/A GGTAAATCTAAGG 460970..461377 PHAGE_Bacill_Fah: holin; PP_00403; phage(gi89152494) 3e-27 MKEIWNWVQAALTAFGGFLGWFLGGFDGFLYALVALMVADYITGVMCAIVDKKLSSEIGFRGIFKKVLIF 461377..462078 PHAGE_Propio_PA6: gp20; PP_00404; phage(gi148727102) 4e-05 MNLRKLILTENACYKAGRKITPKGIMVHSTGANNPYLRRYVGPDDGLLGVNEYNNHWNQDKPGGRQVCVH 462214..462444 hypothetical protein Teth514_1271 [Thermoanaerobacter sp. X514] gi|167039915|ref|YP_001662900.1|; PP_00405 2e-26 MQITKITDKQDLLLNPKKKYLSAEVLQREFDYYRAEKLLRKMLEKGLITEVEFNKIDALNRQTFSPFLKE 462497..464062 PHAGE_Bacill_Fah: site-specific serine recombinase; PP_00406; phage(gi89152504) 5e-40 MKKITKIEGNTANSFIKPKTRVVAYCRVSTGSDEQLVSLQAQKAHYESYIKANPEWEYAGLYYDEGISGT 464063..464476 PHAGE_Deep_s_D6E: recombinase; PP_00407; phage(gi423262352) 1e-05 MGHTPYGYRIEDGKAVVDEKTSEQVKELFSGYLAGLSLKEAAKKAGIDCYHATAGKMLQNKHYLGDEFYP 464480..466051 PHAGE_Bacill_Gamma: site-specific recombinase; PP_00408; phage(gi77020163) 2e-28 VAVSRNVTVIPAIKRVGNNKTSESKPKIRVAAYCRVSTDSEEQASSYEIQIEHYTNYIKKNKEWELAGIF 466161..466406 hypothetical protein [Clostridium clariflavum DSM 19732] gi|374297833|ref|YP_005048024.1|; PP_00409 4e-34 MIDVNELLEEAIRETENLNDGEVFLVKDLFKGYVWNRIPRKDRLLLGTLFLNHVSKMNGNLKAIEKTSSN 466509..467378 nucleotidyltransferase [Streptococcus mitis B6] gi|289168545|ref|YP_003446814.1|; PP_00410 9e-167 MVDNIIKSVAEKLSSLSYIEGIVLGGSRARGTHTEDSDIDIGIYYNSESFDINTINQFATKLDDEHRNNL 467359..468093 PHAGE_Microm_12T: hypothetical protein; PP_00411; phage(gi472342811) 6e-08 MKENKYDDNIFFQKYSQMSRSQKGLAGAGEWETLKKMLPDFKGKRVLDLGCGYGWHCIYAMENGASSVVG 480671..480683 attR N/A GGTAAATCTAAGG #### region 3 #### 1474309..1474509 PHAGE_Lactoc_bIL312: Csp; PP_01338; phage(gi13095918) 6e-17 MKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQAANVVRL 1474930..1475358 regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01339 4e-77 MNILFFLTPKSEVAYIYEDYTIRQALEKMEYHKYSAIPIISKDGKYVGTITEGDFLWTLKNDLNLDLKGL complement(1475501..1476256) peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01340 6e-137 MEKKVLATVGEKEITNIDIENALKSLDPYQAMQFKTEEGKKHLLNDLVNQELFFLDAKEEKLDEEEIFKL complement(1476377..1476793) hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01341 3e-71 MYKEKLFDNYFKFLALFFWPIMWYKWIVISNGTLENMLFTTYAIIAIVFIILYSVSMIKYKDITQIDFFY complement(1476957..1477463) PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01342; phage(gi209901280) 3e-10 MNNLDKLFELASQEEIIIHYTTYIAGDLEGLYINKHGMKIISLLSNLKQNTKKLTSILAEELGHHFTSLG complement(1477545..1477865) PHAGE_Geobac_GBSV1: immunity repressor protein; PP_01343; phage(gi115334658) 2e-13 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYLLGRTLVKENI 1478034..1478231 PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01344; phage(gi17426238) 6e-06 MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEVFFIQL 1478335..1478775 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01345; phage(gi90592709) 3e-37 MENKKDILFKETDERLHNYKYLDIKIKNINLDIKRYENEYSGCGAMVYTEKTSNTYNISSSVENEVLKRE 1479024..1479467 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01346; phage(gi90592649) 4e-24 LLKYKEILETIIEILKKNFTESIFIDDESVQGSEESCFFVSILSVICTPIMLNTNNKDIVISIKYLPKPQ 1479472..1480536 PHAGE_Clostr_phiMMP04: tail sheath; PP_01347; phage(gi414090451) 5e-69 MAIGLPSINISFKELATTVKERSARGIIAMVLKDAKALGLNEIHEKEDIPVDLSAENKEYINLALMGNVN 1480550..1480978 PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01348; phage(gi414090452) 8e-08 MANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSR 1481092..1481538 PHAGE_Clostr_CD119: XkdN protein; PP_01349; phage(gi90592652) 2e-15 MSENGLSKNINIVDLLLNSDTENLERPSTIVELKRLSTIFGQEFKVMCRALTISKDEEIQNTCLKIDENM 1481616..1481732 hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01350 1e-14 MDKGELKLIEAFFALEIEEEVEKMKHGYGVCPLTGGGM 1481732..1484185 PHAGE_Clostr_phiMMP04: tail tape measure; PP_01351; phage(gi414090455) 1e-22 MGNVREEGINMYLTDNYTPKMNQIISVTDNFRRATVAVSLSTNVMASSIKNSIGSASSRVNSLNSSLRKV 1484185..1484607 PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01352; phage(gi414090456) 1e-47 MEMWLRQAEDRFRFPVFPSSFSINGKATVNSSSILKIGEIATFGGVALKSISISSFFPNKDYTFCDYTGF 1484889..1486418 PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01353; phage(gi414090458) 6e-122 MIINRSKDSSSNEISFVSKDMGFLLMQSEVSYNFKDKLVEDIAKQVFAENRISVGTIAKTNVKYTKMFIG 1486434..1486760 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01354; phage(gi414090459) 1e-54 MANPINEFIGIIREEGKHHNQPSFFIGKIKSKLPDLKIETNNIILEKEDILIDSWMLDRQIETFDTETNQ 1486760..1487188 PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01355; phage(gi414090460) 3e-63 MSTIFPFIGVPEDYILPKTEELPIFREVAWDFEKDEPILEKGDFKIIEKKEALKVWIYKCIKTNRYEHEI 1487181..1488233 PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01356; phage(gi414090461) 3e-140 MYSDQTYEVIKNRTLENINLDIYKGEGSFLNNMISGNNLELSKIYLELSKIHKMAFIQDTYNQFLDKRVN 1488230..1488928 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01357; phage(gi414090462) 4e-52 MKLIDKLPSFDRNYIVEEIQGAYDTELNILKEDIDDTFNQLFVDTATWGLDMWEDILCIEKKELDFDTRR 1488929..1489915 PHAGE_Clostr_phiMMP04: tail fiber; PP_01358; phage(gi414090463) 1e-48 LEEKFYIILTKIGREKIANATALGELVGLTKFQVGDSNGEYYEPTEEQTALKNVVWEGNINSLRIDEKNP 1489937..1495114 PHAGE_Bathyc_BpV1: hypothetical protein; PP_01359; phage(gi313768166) 3e-17 MKQNKLLQRGAYFNDKNILIDDFDKRYNDYDFVEFFTGISNSTFGLKSDGNLYACGDNTGFQLGLGKDSS 1495131..1495484 hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01360 5e-13 LFKFDKNKIEQIKQGRKVEMQNKDISDISIGQVKQDDDITNNFIANAEIYEMLLSQSSVNEASNISTFSV 1495747..1496007 PHAGE_Clostr_phiCD38_2: putative holin; PP_01361; phage(gi333798129) 4e-37 MDKLITELSSLGAIGILCALLFKNTMQEKKEDRDMYKKTVENFIELSTQQQEINKNILVQMGIMKTDVEE complement(1496218..1496673) hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01362 1e-78 MGLRDKFAQSFARSKTMSGPEKKANEIMGKLLLKKAILPIVLMFVIIIAGAMLKINSWVTLGINLVIAVG complement(1496901..1497320) PHAGE_Strept_3: putative cI-like repressor; PP_01363; phage(gi28876313) 8e-08 MDTLGERIVYLRKAKNLKQYELEEMLGCDNLSKFERNIRKPNYEILKSISEIFNVSVDWLLNGDNLSHKS 1497616..1497825 PHAGE_Bacill_BCJA1c: cro; PP_01364; phage(gi56694875) 4e-08 MDARRKWIPFLGVQVKQRLIELNMTQRELAKKIGVNENYLSAILNGRRTGKKYKSSIYQLLNIEYSEDD 1497857..1498066 hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01365 9e-32 VCKLDSDGVIECCKAIDDFITALSNIKSLNMERLNILTKYSSTCSILLKEGNYEGCTIVYRKMLEELKT complement(1498283..1498681) PHAGE_Lister_A118: putative repressor protein; PP_01366; phage(gi16798819) 3e-09 VDTLGKRIAYLRNSKKLTQRKLMDILKFENLGKYETGDRKPNCDIVMSIADYFNVTTDWLLYGKEKVNSN complement(1499099..1501591) PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01367; phage(gi9631364) 4e-11 LNSNTSIKNKDSNPKIFLVLTLYLLGIFMGAIDTGIVSPARTIIQNSLGVNEKTGIWMITIYTLTYASVI #### region 4 #### complement(2526862..2527554) PHAGE_Feldma_virus: putative sensor histidine kinase; PP_02332; phage(gi197322366) 1e-09 MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKATVKIREE complement(2528140..2528274) PHAGE_Clostr_phiC2: putative transcriptional regulator; PP_02333; phage(gi134287378) 2e-13 LKNIHKNSISSLMSALHGEYDEVDEDKLIEIEEHFKSLKEENDS 2528419..2528652 putative HTH-type transcriptional regulator [Bifidobacterium bifidum BGN4] gi|390936393|ref|YP_006393952.1|; PP_02334 2e-27 MKTKVREFRTNMGLTQQQLADLVHVSNRTIISIEKEQYSPSLMLAYRMAQVFGTTIEELCCLKENKEMED 2528636..2529049 hypothetical; PP_02335 N/A MKVKSKRSFIVGIIVCMLCCASLIIYCILKEKRFLISSFLLIAIAIFNFCNAFSRKGIVEELHDSTDERD 2529068..2529268 hypothetical; PP_02336 N/A MCFKTYILKRVLNNKHLEITRSFDLDNLICTATEILKDNEIDLIITDEKNNVVWRNEKSTPQQENA 2529646..2529963 hypothetical protein CDR20291_1077 [Clostridium difficile R20291] gi|260686442|ref|YP_003217575.1|; PP_02337 2e-48 MDFGNINLILIGIIVIIGTTIIYLIKPKTAFCSKKYFNKLESIYGNIDKKKTVKLELLYRYVTGLEYIAI complement(2530024..2531631) PHAGE_Bacill_36: low copy number virion structural protein; PP_02338; phage(gi156564190) 8e-14 VNCTNKKILILSLSMITILASVGEVNALEVKNNSNLEKQTIKETVVPELVGLKMQEAFPDENFRKYIFGI complement(2531930..2532187) PHAGE_Clostr_phiMMP02: endolysin; PP_02339; phage(gi414090399) 6e-39 MYKHTIVYDGEVDKIPATVLGWGYGSNKILICNIKDYVPGRTENLYVVVGGACEKIGSITKENYTMIKGS complement(2532238..2532459) PROPHAGE_Lactoc_Il1403: IS1077F transposase; PP_02340; phage(gi15674057) 3e-05 MNKYNKTLKKNKIFQGISRKATFFDNSPMKNSFGVMKRECIIKKYKQLFESFFVIIKRIMRGLRNLDMKV 2532821..2533171 hypothetical protein CDR20291_2194 [Clostridium difficile R20291] gi|260687545|ref|YP_003218679.1|; PP_02341 6e-57 MIQKKFFMGFCGFIGFLSLRYFSSGNIADLTYIGFFAFFSNFIIAKINGDKADERYVQDEKSAMAFTGQF 2533173..2533373 PHAGE_Lactoc_phiLC3: phage repressor; PP_02342; phage(gi45597387) 2e-05 MPKFICNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELFIFD 2533799..2533975 hypothetical protein CDR20291_1271 [Clostridium difficile R20291] gi|260686636|ref|YP_003217769.1|; PP_02343 5e-25 MFRDKMDKCTHMLTAYIGSSYDYCDFIDTQLDDFIIEYGEKVVESCLHQVMVLVSKYN 2534200..2534400 PHAGE_Lactoc_bIL312: Csp; PP_02344; phage(gi13095918) 7e-21 MNNGIVKWFNNEKGFGFISMESGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKGARGPQAENITIL 2535011..2535823 ABC transporter substrate-binding protein [Clostridium difficile R20291] gi|260687550|ref|YP_003218684.1|; PP_02345 2e-140 MFKKFSVLILSMIISLSITACNSKENKANNESNAKVTTANDSKEKETLFVYSGAGLKKPMDEIAQKFEKE 2536145..2536624 ABC transporter permease [Clostridium difficile R20291] gi|260687551|ref|YP_003218685.1|; PP_02346 2e-82 LLLFGRMGIGDSIYKILKLDFVFTKQGIILAQVFVNLPLTIKILHTSLNESNEKMIFVARTLGCNSWEAF 2536626..2537321 PHAGE_Plankt_PaV_LD: ABC transporter; PP_02347; phage(gi371496158) 2e-17 MLKIRNLSLDLPNFKLQENSLNINNHEYFVLLGSSGSGKTLFLETLAGRYPSAKGSVSFKKNLISSLPPE