Definition Campylobacter jejuni subsp. jejuni S3, complete genome.
Accession CP001960
Length 1,681,364
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 52 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 641642..641654  attL    TCGTCAAATTAAA  N/A  Click
2 641880..643994  PHAGE_Feline_virus: Gag-Pro-Pol precursor polyprotein gPr80; CJS3_0685; phage(gi9630708)  1e-05  Click
3 644083..644940  PHAGE_Haemop_SuMu: phage transposase; CJS3_0686; phage(gi418489040)  1e-30  Click
4 644937..645128  conserved domain protein; CJS3_0687  N/A  Click
5 645125..645310  hypothetical protein; CJS3_0688  N/A  Click
6 645366..645797  hypothetical protein; CJS3_0689  N/A  Click
7 645871..646209  hypothetical protein; CJS3_0690  N/A  Click
8 646206..646418  hypothetical protein; CJS3_0691  N/A  Click
9 646405..646890  PHAGE_Haemop_SuMu: host-nuclease inhibitor protein; CJS3_0692; phage(gi418489043)  4e-05  Click
10 646887..647066  hypothetical protein; CJS3_0693  N/A  Click
11 647130..647402  PHAGE_Campyl_CPX: hypothetical protein; CJS3_0694; phage(gi371670991)  1e-14  Click
12 647399..647785  PHAGE_Campyl_CPX: hypothetical protein; CJS3_0695; phage(gi371670986)  4e-21  Click
13 647900..648079  hypothetical protein; CJS3_0696  N/A  Click
14 648076..648504  hypothetical protein; CJS3_0697  N/A  Click
15 648556..648747  hypothetical protein; CJS3_0698  N/A  Click
16 648734..649213  hypothetical protein; CJS3_0699  N/A  Click
17 complement(649352..650485)  PHAGE_Pseudo_MP38: virion morphogenesis protein; CJS3_0700; phage(gi215479954)  8e-31  Click
18 complement(650478..651857)  PHAGE_Haemop_SuMu: portal protein gp29; CJS3_0701; phage(gi418489080)  2e-15  Click
19 complement(651854..653380)  PHAGE_Haemop_SuMu: terminase; CJS3_0702; phage(gi418489081)  5e-55  Click
20 complement(653470..653784)  hypothetical protein; CJS3_0703  N/A  Click
21 complement(653787..653909)  hypothetical protein; CJS3_0704  N/A  Click
22 complement(653896..654144)  lipoprotein, putative; CJS3_0705  N/A  Click
23 complement(654141..654482)  PHAGE_Helico_1961P: hypothetical protein; CJS3_0706; phage(gi422935793)  2e-07  Click
24 complement(654493..654882)  PHAGE_Entero_5: 43; CJS3_0707; phage(gi108862028)  3e-23  Click
25 complement(654872..655237)  hypothetical protein; CJS3_0708  N/A  Click
26 complement(655234..655587)  hypothetical protein; CJS3_0709  N/A  Click
27 complement(655584..655895)  hypothetical protein; CJS3_0710  N/A  Click
28 complement(655895..656782)  PHAGE_Pseudo_D3112: putative major head subunit protein; CJS3_0711; phage(gi38229147)  1e-46  Click
29 complement(656782..657822)  PHAGE_Haemop_SuMu: bacteriophage Mu I protein gp32; CJS3_0712; phage(gi418489085)  3e-08  Click
30 657953..658417  helix-turn-helix domain of resolvase protein; CJS3_0713  N/A  Click
31 658414..659046  PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; CJS3_0714; phage(gi109289954)  1e-13  Click
32 659055..659246  hypothetical protein; CJS3_0715  N/A  Click
33 659243..659533  PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; CJS3_0716; phage(gi428782737)  2e-11  Click
34 659530..660696  PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; CJS3_0717; phage(gi28198989)  7e-13  Click
35 660693..661313  PHAGE_Salmon_RE_2010: tail protein I; CJS3_0718; phage(gi418489712)  3e-08  Click
36 661313..662392  PHAGE_Clostr_phiMMP04: tail fiber; CJS3_0719; phage(gi414090463)  8e-27  Click
37 662402..662908  PHAGE_Edward_MSW_3: putative tail assembly chaperone; CJS3_0720; phage(gi448261067)  3e-06  Click
38 662905..663276  PHAGE_Campyl_CPX: hypothetical protein; CJS3_0721; phage(gi371670957)  2e-08  Click
39 663401..664414  PHAGE_Campyl_CP21: putative tail fiber protein; CJS3_0722; phage(gi422935209)  5e-29  Click
40 664425..665615  PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; CJS3_0723; phage(gi28198986)  2e-20  Click
41 665738..666253  PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; CJS3_0724; phage(gi428782747)  3e-09  Click
42 666264..666500  hypothetical protein; CJS3_0725  N/A  Click
43 666484..666621  hypothetical protein; CJS3_0726  N/A  Click
44 complement(666608..666838)  hypothetical protein; CJS3_0727  N/A  Click
45 666868..668832  PHAGE_Vibrio_VP882: phage-related tail protein; CJS3_0728; phage(gi126010872)  9e-33  Click
46 668834..669208  PROPHAGE_Xylell_Temecula1: phage-related tail protein; CJS3_0729; phage(gi28198982)  5e-06  Click
47 669201..669392  tail protein X, putative; CJS3_0730  N/A  Click
48 669386..670354  PHAGE_Entero_2: P2 gpD-like tail protein; CJS3_0731; phage(gi169936019)  8e-15  Click
49 670456..671271  PHAGE_Clostr_phiSM101: putative modification methylase dpniia; CJS3_0732; phage(gi110804053)  7e-48  Click
50 complement(671299..671586)  hypothetical protein; CJS3_0733  N/A  Click
51 complement(671666..671860)  PHAGE_Lister_vB_LmoM_AG20: hypothetical protein; CJS3_0734; phage(gi472437265)  1e-12  Click
52 complement(671870..672190)  hypothetical protein; CJS3_0735  N/A  Click
53 complement(672271..672900)  PHAGE_Staphy_phiPV83: repressor; CJS3_0736; phage(gi9635682)  6e-09  Click
54 686922..686934  attR    TCGTCAAATTAAA  N/A  Click
Region 2, total : 38 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1239334..1239346  attL    TTTTATCTTTTAA  N/A  Click
2 1239644..1240819  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; CJS3_1327; phage(gi16130540)  4e-32  Click
3 complement(1240816..1241022)  DNA binding protein, putative; CJS3_1328  N/A  Click
4 complement(1241024..1241377)  hypothetical protein; CJS3_1329  N/A  Click
5 complement(1241395..1242150)  PHAGE_Lactoc_Tuc2009: putative methylase; CJS3_1330; phage(gi13487817)  4e-98  Click
6 complement(1242128..1242394)  emm-like protein; CJS3_1331  N/A  Click
7 complement(1242378..1242749)  hypothetical protein; CJS3_1332  N/A  Click
8 complement(1242750..1242974)  hypothetical protein; CJS3_1333  N/A  Click
9 complement(1242983..1243651)  hypothetical protein; CJS3_1334  N/A  Click
10 complement(1243681..1243995)  hypothetical protein; CJS3_1335  N/A  Click
11 complement(1244074..1244394)  hypothetical protein; CJS3_1336  N/A  Click
12 complement(1244781..1245017)  hypothetical protein; CJS3_1337  N/A  Click
13 complement(1245031..1245798)  RloG protein, putative; CJS3_1338  N/A  Click
14 complement(1245815..1245931)  hypothetical protein; CJS3_1339  N/A  Click
15 complement(1245936..1246166)  hypothetical protein; CJS3_1340  N/A  Click
16 complement(1246132..1246395)  hypothetical protein; CJS3_1341  N/A  Click
17 complement(1246452..1246739)  PHAGE_Campyl_CPX: hypothetical protein; CJS3_1342; phage(gi371670989)  7e-08  Click
18 complement(1246792..1247301)  PHAGE_Clostr_phiCP34O: uncharacterized phage-encoded protein; CJS3_1343; phage(gi422935461)  3e-18  Click
19 complement(1247298..1247522)  PHAGE_Entero_vB_EcoS_Rogue1: hypothetical protein; CJS3_1344; phage(gi428782487)  7e-05  Click
20 complement(1247953..1248237)  hypothetical protein; CJS3_1345  N/A  Click
21 complement(1248234..1248437)  hypothetical protein; CJS3_1346  N/A  Click
22 1248651..1249034  hypothetical protein; CJS3_1347  N/A  Click
23 1249038..1249355  hypothetical protein; CJS3_1348  N/A  Click
24 1249357..1250337  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp05; CJS3_1349; phage(gi209363557)  5e-22  Click
25 1250347..1250967  PHAGE_Cafete_BV_PW1: putative glycosyltransferase; CJS3_1350; phage(gi310831262)  3e-06  Click
26 1250969..1252747  conserved hypothetical protein; CJS3_1351  N/A  Click
27 complement(1252917..1253336)  hypothetical protein; CJS3_1352  N/A  Click
28 complement(1253398..1253856)  PHAGE_Campyl_CPX: hypothetical protein; CJS3_1353; phage(gi371670943)  6e-10  Click
29 complement(1253905..1255188)  PHAGE_Campyl_CPX: hypothetical protein; CJS3_1354; phage(gi371671054)  2e-35  Click
30 complement(1255185..1255556)  PHAGE_Campyl_CPX: hypothetical protein; CJS3_1355; phage(gi371670957)  5e-08  Click
31 complement(1255546..1256010)  hypothetical protein; CJS3_1356  N/A  Click
32 complement(1256007..1256642)  PHAGE_Campyl_CPX: hypothetical protein; CJS3_1357; phage(gi371670964)  2e-13  Click
33 complement(1256655..1257104)  hypothetical protein; CJS3_1358  N/A  Click
34 complement(1257106..1258671)  PHAGE_Human__8: LANA; CJS3_1359; phage(gi139472804)  4e-05  Click
35 complement(1258664..1259296)  hypothetical protein; CJS3_1360  N/A  Click
36 complement(1259293..1259610)  phage head-tail adaptor, putative; CJS3_1361  N/A  Click
37 complement(1259623..1260060)  hypothetical protein; CJS3_1362  N/A  Click
38 complement(1260057..1260308)  hypothetical protein; CJS3_1363  N/A  Click
39 complement(1260319..1261485)  PHAGE_Entero_SfV: capsid; CJS3_1364; phage(gi19548995)  7e-30  Click
40 1275328..1275340  attR    TTTTATCTTTTAA  N/A  Click