gi|315057441|ref|CP001960.1| Campylobacter jejuni subsp. jejuni S3, complete genome. [asmbl_id: NC_000000].1681364, gc%: 30.49% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 641642..641654 attL N/A TCGTCAAATTAAA 641880..643994 PHAGE_Feline_virus: Gag-Pro-Pol precursor polyprotein gPr80; CJS3_0685; phage(gi9630708) 1e-05 MWVNANIFCDNNSIGLRNLQKKSKRAIENNEKILHIDTKIFSYRYTQGKGRGGKTLQIWSKPLSKEEAQLVEQGFNIEDISNTTISSKTTQEFLSKALNDDVLLKNSKALQVQNTDKTKLSENQIQINKDSLSLFAKASSKKQNLALQKAAVVKEWLHAKGKISTNDFINYINAKKIYEFKLTQNKLFAWQKEYLANGLDALIDKRENKKDDAISALGIKELFVNTLLAQKGRLNASNIHRVLNYELAKNGKLDLKDFLGKKDEFISYECVLRSMKKYLKENKLIKNIILYGEDGAISRHLPALGVSNWKVNTINEIVEIDASPLDAICKVDFINETYGLKGDECSWHKRYTIISLIDTYSGVTSFYLGFSEDSLSIARAIAKYISTYGVPKCIHSDNGKAFLSKNVKALLERLNIDYKAMPAYSGWSKPYVENKFKDLQNSLTANLVGYIGANIKERQAIEFFYSKKERRLKKGYKTNQRRLKTLEYMRECIDDYSAYFMNNKWLDRLGATPKESFEAKIEDAITIDELSLSMYLGGELKLRKVLNKGLSLNGTLFYNPKLYTHEEVFVCENLNNQNEIFCFDKQKELICVANNLDLELGVSIEEAKVARKLVNRAIKANKDKIDEQRMILEKNMEKYLALGKEKLEKVKSPKTKASNNAKKELEFSKALVSNGDFEHLSTKVIKDTKCKIPKWENAAKKAGY 644083..644940 PHAGE_Haemop_SuMu: phage transposase; CJS3_0686; phage(gi418489040) 1e-30 MQELSKELECFLEQSGMKPSALARAIGASASLISQIKSASYKGDVALWSKKIRDFIANHKDKQNEKPKKEQLFRSRDFSMATFVMSEAVNEKEIALIFGEAGTGKTTIINEFIKTRPQSILIEATCHTSVGVMLDELLNALKIEANSNNASKLKAIARFLKTNEKILIVDEAEYLPLKALEDLRRIADFARVPLILVGTEILYKNLMGKNKELKQLYSRICGKWMMRGLSKEESDEFFGKGYFKFSNGNFRSSAKLLKKALRLAELEECEINDELLTSASEMVIL 644937..645128 conserved domain protein; CJS3_0687 N/A MSFEEIAKELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETIDLIKKEKAKKENLIQGEKK 645125..645310 hypothetical protein; CJS3_0688 N/A MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYIAKKIIRFHLGKKLNKSA 645366..645797 hypothetical protein; CJS3_0689 N/A MQLSYYCFKDRKKRKMPLDTPLNTKNFKLKDKLGLNIKEQIEICNKYGITHKLYVKRKEKGWSLKEILETPKGDKRFKYIIIDDIRRNKQAVSLNSHSKFGRNVLHLGNMSKKANLHFKYSKLDHLALQNNLYQDKNGVIKAY 645871..646209 hypothetical protein; CJS3_0690 N/A MALVYVASPYKALAVRESQRKAQAISVAQQECLKIMRECEGFTPVSPILQFSYLDENKHRDKALQMGLELLKASDYIYMSNHKDAKYSKGMQEELALAKKLGIKELVLELPL 646206..646418 hypothetical protein; CJS3_0691 N/A MTSQCGKATFCDKELHSLNPPEGSATLREKKGLRIVKKRTKHAVLLRYGVVLWDYQINKFNLKGDLNANK 646405..646890 PHAGE_Haemop_SuMu: host-nuclease inhibitor protein; CJS3_0692; phage(gi418489043) 4e-05 MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGEIKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLENLIKAIKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVTKDNFRIEPKIESLEIEK 646887..647066 hypothetical protein; CJS3_0693 N/A MRELSLATFKLLNSVFKTKTAHFNGFLELDFKNKPKLKKQSFKRKKKMTSKQKIRLKRI 647130..647402 PHAGE_Campyl_CPX: hypothetical protein; CJS3_0694; phage(gi371670991) 1e-14 MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIKPLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK 647399..647785 PHAGE_Campyl_CPX: hypothetical protein; CJS3_0695; phage(gi371670986) 4e-21 MKLQDFDFRVWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKEDCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSLIYLVEDEGYTIETIGNIHENPELLKC 647900..648079 hypothetical protein; CJS3_0696 N/A MSKRNGALRAFKTLLKDVLNDENGFYKHKNGKVNIAKLSRVSGLSRSFLKKELYIRGLL 648076..648504 hypothetical protein; CJS3_0697 N/A MSPKQAMLRKQLLAKIHMHKEYLYYKENNAWQDFLALRFEVLSSKDLSIDELKILLDIFDGKIKDDINFVPDFKGRLMLKKASSNKQFFYLKALLKQTKMPIFSFYKLCKKTLKKDIYSLQTLSKKDCTIMLVVLEKIAKTK 648556..648747 hypothetical protein; CJS3_0698 N/A MICPRCANEKTKVLKTIKSDTNERFRRCLKCGYTFMSIELIKVDNWAKYYIKETQKGLFDEEL 648734..649213 hypothetical protein; CJS3_0699 N/A MKSFELKGLENFLKKCENLENEQKQIILKEIIAETLYKESKENLEKEQDSNAKKWAPLKQSTLNSRKAQKIMHTKKLFATGSMQSSLHSGVENDRAFVALNATYKGFAYASVHQFGSKNVIARPFLPIDENLNINKRVARAMEEETKDMLWTLFKQTLK complement(649352..650485) PHAGE_Pseudo_MP38: virion morphogenesis protein; CJS3_0700; phage(gi215479954) 8e-31 MSNIFNKSVDEAYSYLENKGLKISFKYHEIKKQAHDRAFSAAGIMKTDVLNDLHEELKKAMKEGRNFNEFKNNLKELLTSKGWYGKKEITNPKTGEKRTININANRLKTIYHTNMQSAYAKARAKQLSTYSYKTYWVYKCALLEDSRSEHKKMHNCAIHRDDPFWKTSFPPNDYNCKCKVIAVSEKEARAKYKILENPKSIASKNFAYDKRENSQIPKETRISLDESLENLPKIQNYENLSDKELIDKVYEAFNVKKGDLLVDKIGDVISLDDDFFYDKKKQTTKIKKQNRHFYLDYFPKLINDPDEIRLSMDADPRFKGFTKKTYIKYFYDNGVKALVMVLNQKGNQINNKTMFLSEDNSYFKEILNQGKTIYKKQ complement(650478..651857) PHAGE_Haemop_SuMu: portal protein gp29; CJS3_0701; phage(gi418489080) 2e-15 MRILNKTARKSVASSVDFDSIIAALNSENFSELISIYDYFKRFDPQIASEVMKRRFKMCSFPMFITCKDETQRIFLQNYISKSDFRKFVFEMSAAVVYGFAAFLLEWKVKDLNVFPKLKYISPRFFSMDDKERLFIYNESKKLFVDECDDIFLHLHPSDSGSFIEQSLFYNVVSIAVLKQLAMSKNISYLDNLSVPPIIAKTTNANSDKEIEELLMQLSNLRSASVGIFNKDDMVELLNSGLSTSTFTDFLRYCDEAISKLISGQVLAGNAVQNGTQALGNVHEEVRLNVGEMDTLFLSKSIQKLLEQILKLNFAKPAEFEFVFDTNKEVDEQYLAGVYSTISSMGYEIPAEFLAKTFRIEGLKKKEVSTENYAFNSLMLEKNNLLKDKIELNSSAEDEISDEIYEKIKAFWEECQSYEELEERIFKEYPNISFEKLKESLDKKIALASMQALLDTGNE complement(651854..653380) PHAGE_Haemop_SuMu: terminase; CJS3_0702; phage(gi418489081) 5e-55 MDKLEINEIKSRLKALKFNHKEDKNLRRDRILKQGFKAFVFEYFPHHINFIKKESSNFRNFIYDNIDELEKKNNHLCFKAYRGSAKTTLLVRLFTLYSLLSNKKQYALIISSTLDIASESIASLKTELEENAKLINDFEIKLGDEWTSEAIVFTSFKIHKKIKAFGSGKKIRGTNYLGKRPDLIICDDIENDENVESKTQRDKLYKWFNKAILKLVARTQENYLYLVVGTILHQDSLLNRLNDDKRFLIYDFPLVLSFPDKLDLIDKNNILKSDLKGFKLDDENLNKIEILKEYFADTQSFFSEYQNKALSTENAIFSEYKIIEKEQDFDLVVLGIDPALGKAKGDYFAIAELKKVDKNKFHLKASGYKISPSKMIDVILKLYIKYLSLGKIVKIAIETIAFQEFFKDKLKEEALKLGIILSICELKNKVAKELRIDSLAPYINDGTILIDNNSNLLIEEMLTYPKAAHDDLLDASEMAFRIACSAANADYKAINRILSKRKIKKGFL complement(653470..653784) hypothetical protein; CJS3_0703 N/A MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFLKGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKLDKL complement(653787..653909) hypothetical protein; CJS3_0704 N/A MKENNKMINQKSIAKDLLIALLFSTFALALLYLFEIFTRN complement(653896..654144) lipoprotein, putative; CJS3_0705 N/A MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKLPLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK complement(654141..654482) PHAGE_Helico_1961P: hypothetical protein; CJS3_0706; phage(gi422935793) 2e-07 MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLKALHFSNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAYKELFNILGAKK complement(654493..654882) PHAGE_Entero_5: 43; CJS3_0707; phage(gi108862028) 3e-23 MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAPVIINSGYRCKEHNAEVGGAPKSQHAIGSAADFVVKGVKTEEVHQYVLITYGERGLGIAIKHNFNDPYAGFVHLDTRGKKARWTYP complement(654872..655237) hypothetical protein; CJS3_0708 N/A MTLDSVSKDLLKHFNAIGIANYEDVKQGGLYLMLESLTSINHHKDSVNFSLIFSSHTFNKDKDSLIKKIDELRLKLFEFDTSKKLLSSIESGFISSSLFAYRLKFNIEIFSKPEGEEENEK complement(655234..655587) hypothetical protein; CJS3_0709 N/A MIALLSPPKMLALTLKELALMKRAQQNLANIDEITREVVAKAAKDADDICKNKDIADFIWEDFAYIRIKIYLKIVLDDEDKILLDNALKRIENAPLIDKEGNLSSLRLKIMQRKDRF complement(655584..655895) hypothetical protein; CJS3_0710 N/A MDNIVSANKLRNQNAILNPKENDDQKALFLKEKQEFEKEKALFLKEKQEFEKEKALFLKEKQEFEKEKALFLKEKQKTLEENEETIINESLKNKETKKGKQDK complement(655895..656782) PHAGE_Pseudo_D3112: putative major head subunit protein; CJS3_0711; phage(gi38229147) 1e-46 MAFTELSTAYMQAVNKGFSTIFNNALEGGNKDYEKFAMVTNANSLVVEYQFLASLPKMREWIGDRQFSKLKGQGYTITKKDWESSIEVPRDVITYDNLGIIRPQIEMLAYEVQNHYNDLIFTLLEQNQTCFDGKAFFANDHDIGGVSFSNLGDKKLSAASLMEARKNMRALTNESGRTLNINPALLVVPLSLEAKALEIVNSDLINGSSNVFKGVVEVFTSPNLSDQDAWYLIDNTKPIKPLILQINKGAEFVAKDNPTDEAAFMRKTFQYGIDSEDNAGYGLWQLAYKSSGKAE complement(656782..657822) PHAGE_Haemop_SuMu: bacteriophage Mu I protein gp32; CJS3_0712; phage(gi418489085) 3e-08 MRDLLLELNTKLTNEKVKISPIGIAKGLDGRVFKIDGEKLINNIQKNGLDIALNLNHQGGEAYGWFDRNSLELREDGIYASLELTPKGKELVENKAFRYLSPEYYVDDDKNVIHLDAMGLVNQPNLLNRALNKARSLINSTKNSKLSTPRSGTEAKKGKVEHGLQVGAGSETPTRKDDFSSSAKLKKERNTMNEEELEELQKLAEQVEEQAENVEESVQETEDCVGEGENPDSELETLRQENEELKAQIAELKAKLETALNKNEETEIELNKKRLDSLLQNGLILPNRYQKALNMKGRVLEDYLDVCKKEANIVLGKKELNFTNKRKELNAYEAKVFKQLGIKGGK 657953..658417 helix-turn-helix domain of resolvase protein; CJS3_0713 N/A MSKKELAKSLFIQGKSIKDICVLTGLSRQGIYCMKKDDFSKGIDWESLKLAALRDEKDLENKEAMFLNALIGEFERFLESASKNELDIDTLEALNKYAKTYWTIKAPQKVDVKALNLQTCKKTIDSIIELASTNEAVCEWLSDNSDLIISKVLK 658414..659046 PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; CJS3_0714; phage(gi109289954) 1e-13 MNELGIICDIKDNKAKVAIGDMVTDFLSVFQSLANSYAVSFSPLRIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTLKLDVVKNINITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTSGEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR 659055..659246 hypothetical protein; CJS3_0715 N/A MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFMFLGFSQILENIFEFYKGLK 659243..659533 PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; CJS3_0716; phage(gi428782737) 2e-11 MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDFKIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK 659530..660696 PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; CJS3_0717; phage(gi28198989) 7e-13 MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKSFLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYLIQRLKGVKPAAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQGILELDEFIQSKESKTEFLQTPLPFVAKIKQLEYFSGGASEESDEALRERAVMSVHRFSTAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRPLTDEVSVELAKKREFIVDAKLLLLELSRANEISEKINALQKDFDLSVDLALGFIYKCLHQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL 660693..661313 PHAGE_Salmon_RE_2010: tail protein I; CJS3_0718; phage(gi418489712) 3e-08 MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLLPILANAYDVSIDGLNEKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNYGGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIKSKNDSFNANAQISGETIEILPFQTTFLENEIKSTKNVFGIFMCEITRTNIDFKGVY 661313..662392 PHAGE_Clostr_phiMMP04: tail fiber; CJS3_0719; phage(gi414090463) 8e-27 MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSEEMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGVYDEAGDLLAVGNVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLKIDALTQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSIKATNDNQFVNLATLKENQLNLKDPELLALIGFNTYLDGTSLLKSHSMSNNVIYTNTTGGKTPIAIKIQQIDNVVNQASISIYINNSLIKKINAIQYTNSTGKYIPLTHYEGILKPNDTYKIELFNIIIDKSNIEATILNVR 662402..662908 PHAGE_Edward_MSW_3: putative tail assembly chaperone; CJS3_0720; phage(gi448261067) 3e-06 MKYFIDKNNNNQIYAYEDEVSDEQIKTGLTPISEEEFNALTSPPKSEEEFLNEAKELKINEINAKKESVLNGGFSFKGKIYQSSNEDQLRINGAVTNALVNPNLIPYIDWIALDNSTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELDLIVWEGKE 662905..663276 PHAGE_Campyl_CPX: hypothetical protein; CJS3_0721; phage(gi371670957) 2e-08 MTKAELKRVCVKPYDKDRFEVIQDYEFALLSFKGIVPQGFKTDGASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLKIFVFYHSCNLYHAIKCLIKGK 663401..664414 PHAGE_Campyl_CP21: putative tail fiber protein; CJS3_0722; phage(gi422935209) 5e-29 MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLFKEELVNKEELKSLIQEILKDEGFQNTNIKISKTPPNYNTQAKVGEIWAVLESKKQLFICTANDNDFTSWVDLLGDGSNDIIPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFATPNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIAHVFKKYNGGADECCLWSSSGSREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKSIFIGEQEIQSEDFNVEKLEASSDTYGDYAFLFEISKQDQIVMKKELNLNPKKTKNTKNVKK 664425..665615 PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; CJS3_0723; phage(gi28198986) 2e-20 MAANYGVNFNISNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESADSFPIFAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIISFFEESEESENTLTNIVNAIEAFKKAKHKTGFNPDLIIAPYYSHEAGVKAKLESVASSMNITAIVDLYATNVGEAINTMEAFSSKRLIATWPWVQILNTQGKYAYVPQSPIIAGLIAHTDGDKEYGFSDSYSNRVMNGVTGTEYFIEFINGFDCDAERLRNAHISTCILSEGYRSWGGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKGAKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKTISAE 665738..666253 PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; CJS3_0724; phage(gi428782747) 3e-09 MFNKVPQVIEQANCFIDGYGYAGVARDITLPIIEQEVLESKGALSANYGTGVFKAMECSFKISEMGEQAFEAFGANTFSKTKIPLVFKASIHQSGSGKQVPFVVELNGEFTSMTPPSIVAGGEFTSEIKINVHFIKITMDGKRLFLADIKNLILEFNGIDKMAKVKANLSL 666264..666500 hypothetical protein; CJS3_0725 N/A MSKIIKLSNGNEVKFNPPTAGMLRRSMDMQKGEGSRAFYIIGECTNMSLEELDNLSLEDITLLSNELNNYQTPSGSTE 666484..666621 hypothetical protein; CJS3_0726 N/A MGALNNEAIALIAHYLHFSYSEIMSLNIKDYLEFLDISLKIAKSV complement(666608..666838) hypothetical protein; CJS3_0727 N/A MKKIDNAFNAKIIFLKNFKIVFKAFLTLGIFVAFMLSFLSDDYLAGFVNITSFFVLFSLMLYIVTFIYCFFKLKHS 666868..668832 PHAGE_Vibrio_VP882: phage-related tail protein; CJS3_0728; phage(gi126010872) 9e-33 MQDLGLSFGISLAFKGFKEFAKNTEALKKFSANLDQSNKSVKALNKSIDALEKSKAKIKAIGEEFSALKGELMAKGASALAIGVPVKISANLEDDMNNINAFLNTNNESLNLLRKNFLKLSSNIGMNVNELTKLGEAGARLGIKSESELLKFSELGAKYSKVFKLNNEESINFMSKLSNIYKLNTKDMQNLGDKIIGVAKASNVSASSVAKIMNEVGGDAKLIGMSAEGAAALSAAFASATKDEGEAIGTFKAMTSVMSNLNNASDDMKTKFLSLGLSTEQLSAYFKQDASGAVKVLLNQIKTLPKDEMTDFLNSVFGTGAAGMMQNLVDNTDKYEQALKSLKNTKMGALNNEFKKLGDSTNTSFAKLSASMANLSASIGEALAPALSFVMDSISSLINFIREIIDAFPNLSKVIGTLVVSLTIASVALSALKVGFLVAKIAGAQFAFTLNAIRTAFNILKIAFLTNPIGLVLMSIAAIATLVIMNWDKVKTFFIGFIDKISFVFSGFGEFFSSLWGGLFNWFASKFEWLSKAFAKIKDIAKSVASFFGFSDNDKKVDGEKYQNLQNDNSRTHHGIVRSGAPKHEARQAEIAALSKRSDISKKNEINVNINGTFNISSNNGVFDLKAFAKEVENSVLSALNKNADKKVQTTIWG 668834..669208 PROPHAGE_Xylell_Temecula1: phage-related tail protein; CJS3_0729; phage(gi28198982) 5e-06 MIFCLGEFEFEALNVDELEKNYEYGIRSIERINNHNALISVAKANESIKISGKTLPLSKDKNTYLDTLKQMASQNKSYAMCSASGVYFGKFAILSISEKQSAFLEGSGFLTQNFELNLQRDFDE 669201..669392 tail protein X, putative; CJS3_0730 N/A MSEIYIAKNNERLDSVVYRHYGTLLYFDQVLLANPKLEPLLKTGDKVILPNIEIQENKEETLW 669386..670354 PHAGE_Entero_2: P2 gpD-like tail protein; CJS3_0731; phage(gi169936019) 8e-15 MVNHPSFKIKANDKDITQKISLNLINLSFDDKAKDESDEISISLNGLYARAPFGDKLELWLGFDEKLFKCGTFSINSFSKNYSSKTTDIKATAINFASNIKNKKSRTWENTNLADIALKIAGENNLKAKTNNANKAYIKHELQNNVSDIEFIYTLCAKYGFLACIKEQTLIIIEQKEAAQEGVKGGGKQEGGIKYTLDISEFSDLNISIKNRNDYTGVKLTYQDIEQGIVKSVLSGNDKGCVYELKVAGVKNDSEALNLANAKLNALNKGSFEGSFSMIGKNIKAGANLEIKGIDEKVIFSIKDVKHDFSLSGYTISVNFEG 670456..671271 PHAGE_Clostr_phiSM101: putative modification methylase dpniia; CJS3_0732; phage(gi110804053) 7e-48 MKNNTDKFLKTSTLTKPTRTTLKAPFAWVGGKNYLAKEIIALMPEHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLTSILHSMLVSRKIFHMLKNKEIKPRNNIERAAFYFYLISTSFGSSMGQFAMSKQRAPKRLCRDFSLYTKRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLLKNIKGKFMLSYNDCELIRELYKDFNIKELKVRYSLNNNVLKRKESKELLIMNF complement(671299..671586) hypothetical protein; CJS3_0733 N/A MSKVIADIKKGFRKTFINAICNHNNELVLEYLKNGMSATKECMGEEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSLLK complement(671666..671860) PHAGE_Lister_vB_LmoM_AG20: hypothetical protein; CJS3_0734; phage(gi472437265) 1e-12 MKYPNVYVKLVGEDGNAFSILARVSNALKKAGVSKEEISQFQKEAMSSDYNHLLNVVQDWVNTN complement(671870..672190) hypothetical protein; CJS3_0735 N/A MKDIKNYTDKELKEKIMQDLEDEFRILYKKLLKEKDYLARDNILELMTIYNMGINSYSIAKNLEMNEDKSLIQVPLFERYIIGRKFVVKYNNEKQRYELKSTFCEF complement(672271..672900) PHAGE_Staphy_phiPV83: repressor; CJS3_0736; phage(gi9635682) 6e-09 MQMQEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQILNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDLIDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDGLFIKQVLKQDDGVILHSLNPLYKDIFYKSGDFLLIGVVIGELSKM 686922..686934 attR N/A TCGTCAAATTAAA #### region 2 #### 1239334..1239346 attL N/A TTTTATCTTTTAA 1239644..1240819 PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; CJS3_1327; phage(gi16130540) 4e-32 MAKINKLTDSFLKSIKCESDKKFIKFADPSLKGLYVFIYPSGKKLFKIRQANDTYIKIGEYPLLSLAELREIALNAFKLKAKGQNIKNAKRLKFGDIYDEVLEKCKADGLSLKEIQRGLKYKNGVFKNFKDVDIESIKRSHVIETLKTIEHQIPTLIKAKGWINKIFKYALQLEIVENNPVTSIDNSIVFKKASKVIHQPTLLENDKIKEYILALKNSDLKKTHKNLMLFNLLTAQRPGNVIKATWDEIDLKNAIWTIKAEKMKMRKEHIITLNSQALKILKEQKKMKVNDYIFAGSSKNGCNSENITCNINKRLGYKGIQSAHGFRAMFRSLANEHQLDHGVSMDIAEQCLAHEQKNAILKAYNRSENIELKRKLMQWWGDYIEKLAGDF complement(1240816..1241022) DNA binding protein, putative; CJS3_1328 N/A MAKFGKIEKLLSTKEVAEYLGFTPLKIRKMRMRVNQNKFNFPKGIKIGSTFKYEKAEIDKWLQTCKVI complement(1241024..1241377) hypothetical protein; CJS3_1329 N/A MKEFKEYIKAKIALEKELENTQEMLKQTIKEMLLLRNDNAFNQNANDEMLKAINKNWKITASLESLSDTLEIKVLEQSTSYNRFCFGDVLILISNFLSYEEQKAIIAKLGFDLEKGV complement(1241395..1242150) PHAGE_Lactoc_Tuc2009: putative methylase; CJS3_1330; phage(gi13487817) 4e-98 MFHPQLYNDHFQNFKRYNIPKAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSKMLIKEPKECGKSPCMIVFCSFEQQTMLIEVAKKYGFNHYINLVFRKQSSSQVLKANMKIVGNCEYALILYREKLPKFNNDGKMIYNCMDWQKDEGIPKVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANEIMFKHIERSLFA complement(1242128..1242394) emm-like protein; CJS3_1331 N/A MKKNTNQQLEQLKELNQGELNQEIEVLTKRALAIHRSIQRVKDERSILNQNIKDYQSEFNEIMEKIAFLKEPNLFNQKGSDDVSPTAL complement(1242378..1242749) hypothetical protein; CJS3_1332 N/A MNITRELEAYDLAKLVLNNDLKYFFKDAKIVGENKERRLCFYFSDSFVLALFEKEKENILQRLREEYKKKLEFYKRIDLVFYSIAAKGINELKARSKEEQEVLERGLLKLENIIKRIKNEKKY complement(1242750..1242974) hypothetical protein; CJS3_1333 N/A MKVNFIFKGTIKCSKCNLEFVPNSKFFKGLDEIIGDVKSVSLDGFCPECDNKLKTSFKVEKITREFNKTYTMRC complement(1242983..1243651) hypothetical protein; CJS3_1334 N/A MRYINIKPRNKSLSNTIIILDNSKACFELSKKNKKAKDYYIEVQFNGLYQPSKQIEAEVWKILSKMIKRFKAYSVDIACDFDDDLAVSKPREFKHQERFSKLKIFGDFHTYKTSMYINNPQSKYYKLERILLYDKYEKQKYYHKENIKREFVRWKRLELTLKIKDKFLDRIENDINDALDLMQDYLRMIGIWHFNMRMILEQTKYLNNPRWAKIFKPYALAS complement(1243681..1243995) hypothetical protein; CJS3_1335 N/A MSFKPIQKDNDAFKKAQRAKVIESLAMRGYALVKISSNGFLMKKGFEKDILCKQIIAQDTTASVSLSTKKPFTNTLKDGGFLKKCEAQQEIKALMNLQKTNSKA complement(1244074..1244394) hypothetical protein; CJS3_1336 N/A MSNKPYLENEIKALKYQLLIEKQKHKKTKEKVFKLKNIQGEKYEKLKAEFAKNQLFVFRDDELFLWVESLMRELKTKILCTNDELSKKACDILVFKLEKRRKNFNY complement(1244781..1245017) hypothetical protein; CJS3_1337 N/A MTSEELKQFCKEQGLTYKELAELIGFGEGAVKNAISTEKISFQMAHAINMLKKIFELEAKLEKAEAIKKDFKAWINEN complement(1245031..1245798) RloG protein, putative; CJS3_1338 N/A MTEEKENIVNFKIKIIHEENIELGIMANSLLSFQKLMDSFISKEHGITQSKIFLEKVETGSDIYSLVFEIAGEVLPIIAPIQALNEFIELIISFKNIKSKSIEEIEENPHFTKYNANNLKNIFAPVTINQNTFFINHKGEELLRINSDEAELIYENANYICEKKEIEYQKIHENALITMYKTTNKIDNKTKHKAKCDALSPYAVDVSFSDEKIAEEVLKNPYGFNFLVDLEYYKNDKNKIILYRIFNIKDKISLE complement(1245815..1245931) hypothetical protein; CJS3_1339 N/A MQSNKTLGEKLKDSIDLADKEAIKQSVGFVFSLANKIF complement(1245936..1246166) hypothetical protein; CJS3_1340 N/A MEQEIAKIKKFKLECKNCETQIIIDTHNSIKNCPVCGLKFYDNLESPFENLHEQILLINKNKNVKVYFVCEEKEKR complement(1246132..1246395) hypothetical protein; CJS3_1341 N/A MDKNLKKITELKIKCKNCDTKIITKIGNVIKTCPQCGIKFIDENLGYNLFEILTELFKSVSKNKNAEFYFVCKKECDGTRNRQDKKV complement(1246452..1246739) PHAGE_Campyl_CPX: hypothetical protein; CJS3_1342; phage(gi371670989) 7e-08 MPSDRVEIELFTGFYDKKGNKIYEGDILYSFEGCSEDEAFKYKVVFKEGAFYLVECGDDGEEWDEDLLSEFCLEELEIVGNIHENAELLNENKPS complement(1246792..1247301) PHAGE_Clostr_phiCP34O: uncharacterized phage-encoded protein; CJS3_1343; phage(gi422935461) 3e-18 MILVSGYSVELRAKIIDRLEYLENELKKQSYKPLSLKESLQMQLELLERNEKLQIENVNLKNEAKENAPLIHFANRIKDTNDAILIRDFAKILYEKNKIEIGEKRLFKILREKGFLMSDNKPYQKYIEQGLFKVSETTVSTINGDRLVSTTKITGKGQIAILKEILKAS complement(1247298..1247522) PHAGE_Entero_vB_EcoS_Rogue1: hypothetical protein; CJS3_1344; phage(gi428782487) 7e-05 MNLELFKKDENKEISLTSLEIAELTGKEHFNVIRDIETYLEKVVEGVSSNLKTPTKTHKISNLTSVTAYQKEKY complement(1247953..1248237) hypothetical protein; CJS3_1345 N/A MKQAIKQKLGVSSITEAGLKLNLAHNVLNSWLSNNLTNAKVEIALLKLGLREDERLIKRIEKLKSEYKKNEIRKQAYEKSMKEIKALLEEIEAA complement(1248234..1248437) hypothetical protein; CJS3_1346 N/A MQEAKSILDVLSFRKTEEKEELRKCFNFSDEVFEKGLNFLHTNDEISIEAVSDGLFEKTIISIKVSK 1248651..1249034 hypothetical protein; CJS3_1347 N/A MNYEEIIKILKKIANVDTIKELSDVLNINYATFNTWATRGEIPFKRIKEFSEKLGVNIDTIINGNINTKGNENVIVQGKNNVVNFQKNSKYNDKFQEFLALYEKYGNEALLDQFINKLENLKKIIEE 1249038..1249355 hypothetical protein; CJS3_1348 N/A MEIINTLIKFFNSFGVFVLLGIAIIVLWILSIREKNRKEREVYEAIRREEVSRISDGVASGIVRIFNDKSFIQALNNGVSIEVKINVDGSQNIIINGNGNQIQRV 1249357..1250337 PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp05; CJS3_1349; phage(gi209363557) 5e-22 MENYDIDIYGNPIKVKKPSREFKGQSLIYFPKSYVVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSFITEFTGINEDMIKNCNDISQTLKEFDDFLKSGDILVAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCELTHLCLMELKKTAFDNSLIENDVLVNNGLKTQIRQTQTKAKDIQAKIQEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILILGDNDYRAMIKGGISNKLKRARELILKGQDLKIISENVFYDMIF 1250347..1250967 PHAGE_Cafete_BV_PW1: putative glycosyltransferase; CJS3_1350; phage(gi310831262) 3e-06 MQLSLFDENNLKDLGIQSIKAYEEKNEKKLKDLIFKINCVLNLDSQKDLVLQIRSIYIEIYKNFLKDEEIKNLTLGFVIKLSLIYDKSVLEELKKINISNNFLQDVLKMDLQNFSKEIKLFVKENLKNQISEKHIEIKQLKIFDLYKKIATYIYIKKFKRYGLLSYIQKNTQDDKLKNQTYDLMNAFRFYLNDFFENFDMSRGLKE 1250969..1252747 conserved hypothetical protein; CJS3_1351 N/A MYITIDKIAEFLTSKSRVCLTINGHWGIGKTHLWKQVEEKINADKKVVYIDLFGKESYKQILEEIVFKIHQNYNKTVNVTSRIISKTINIKSAGIININPDAIFSFLKKEDFNNIIVCFDNIERRSDNLSLKEILGLVNLLKEDKECSVVLILNKNELNKQEDNAKNNMQTSSNDKTQHDAKQNNNDWYQEYKEKVIDYKVCLKDNDEIAKALIEEAFMQDEKLIRDNGLKSNLVDIVLKHYQDICDSNLRLLLKILEHIKYFNERCFQSHYDKTIKEEFIIVIHEHYLAIFNAVKDFYIQRKEKRNLSNMYIYDIVTRYLNNFFIINDNDEKKLNDIIIRQLSSKLLLTFEKTYTTYFDEGGSDADFKNKIENILQIRDNKLEVFAKDLNSEKFLKTIYWFKQIIKSDQEVSEEYKKGYFEKIDKIIQILIKEQYPYYSKRIKLLIAFSKQCKKIYSEITKKHNNEDKLKIFKYNIKEYPHIFHFVNIDKFNQYEIKSIKDAFYNDKYFLKNFIDFFRLVPKKNPIPKGDHNLNRYTDTDSKEYEKIFKKNNLFLAFIEYINENKYKKQIFIKDRRVNNDKSNILSKLFYL complement(1252917..1253336) hypothetical protein; CJS3_1352 N/A MINLLFGNAKLYIALALMAILTGYFYLRLDSTKAKLEKSQSDLALALKINENNQEKLKELNQIHKTELKALNEANNQKNQVQERVQYVKEYIYKSNENNITKLFNDVVDRLWDANSTSSNQNRNSKSKNSARTTNIKSS complement(1253398..1253856) PHAGE_Campyl_CPX: hypothetical protein; CJS3_1353; phage(gi371670943) 6e-10 MKVTINRRYTGKTCVIGKFKVLDDEEKILFECFSLEEDKEGLESGKDLRIPEGNYNLKRHSPSRFENTLRSITKKDDTMINVYNDEVPSSRAILIHWGNTDKDTQGCILLGLTKDNNNESVGQSRQACKEFYDLVYGKNLEDIKLEITNELA complement(1253905..1255188) PHAGE_Campyl_CPX: hypothetical protein; CJS3_1354; phage(gi371671054) 2e-35 MSVDLREIAIKTEEINKDFSEALEILKELFKNGVKPSDESIKNAINEVLTSFNFIKQSELKEKLEALLEELGINANINEESLKEVVLKVVLENQESLKGDKGDPFTYEDFTEEQLENLKGQDGAKGADGKSAYELWLENEENTGKSQDEFLESLKAQTPTKEEIKPIIEEMLEDMKLNLGINGIKVSNSIPTPKTKANVNDLIITYNENVKQLWLCVASDDKYTSWINLLGNENITAQELIIISFDTNLNSGQYGGCLSDLRFGFENSLASTTQIIKGLNEGSFLITKDGMGLKSKNYTEVSVLSKPSKNQIEGNIKTSGIYNDPAWHNITNALKKYDGNANECCLWASNIKNSVSIELFTNEIPMSLFYRQAGYYGNVNLSNIKMQKALRVQNEIIVERSFIGIKKEIDKTTYGDNAFLFEFEEEK complement(1255185..1255556) PHAGE_Campyl_CPX: hypothetical protein; CJS3_1355; phage(gi371670957) 5e-08 MKNELKRVCVKPYDKDRFEVIQDYEFILPNYKGIVPQGFKTDGASIPRLFWSLFPPFKSEYFSACVVHDFLCEKAKSRKDYKLADLVLKEAMQALEINKFKIFVFYCSCNLFHQIKCLIKGIR complement(1255546..1256010) hypothetical protein; CJS3_1356 N/A MNNLENNTNVILFAGSAILAFFYQFLAYFKIETAQVIVLLIVFSFSGIASMIKTLALRKNFRNFLITDILSKTLMFFVPFILAIMAKQISVFYYLVDYSFSFLTIGEFLAFLISVQSIRKKEDIKEMDFYNLFIEKFKNIANKYLKLEGDKNEK complement(1256007..1256642) PHAGE_Campyl_CPX: hypothetical protein; CJS3_1357; phage(gi371670964) 2e-13 MFYDLKNKSLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDKLLKELGFAKVKEEEIPSFNEKIEELRQIQTYDEENNLYIISYEIKEKALEELKELKLEELKAIKEEKLLFMPFKNTIFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKIITFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK complement(1256655..1257104) hypothetical protein; CJS3_1358 N/A MNCLLLSNNGIALNLPPSLGGSVANYNYMLKLDMIYKQAVILPSNINNKEVVMLGEVWTTGNMSNKTSANTLHITWNNFNSSVELHALSKYYTANAKIKVEKKFNFGNINNLQIMLSSYQSGSAKASAGWNLNDGNRLNPRANLTLYWN complement(1257106..1258671) PHAGE_Human__8: LANA; CJS3_1359; phage(gi139472804) 4e-05 MLDNSKIRSTELYATLSQATKDVTAIREWLYASKDRIDEHILENLNAFDEKVKEALQNYENLSDEKLNMLKELYKKVVYPFDYVSDEEPTMANVNETWFKTDEAKIFKFIKNPQITFLQKERPKERKINDIWFKPMDDVNLQVGEFYLCEKVLKNEAWINPSLPENLEPAFNQEEAPQNATLGDIWKKGDEYFVYIKTTSGNSWTSPENPSEYTPTYESEEEPSEAKLGEIWKKGNEYLIYARVTNDTAWILKSDLGLDAFIWFNEEKENINFILSLIGDLKKEDEKEETSKNEIKDLEQNLSNKQEELENIKKQIEEALAKDPPQNVDNLNEKKTQLEQEITKMQEDLNHKQNELEQIQKDKSLVSQKMLSDALKEKVGLKGDETLNGNKTLNGDNIFNGTNTFNQALTSRADPTNDNHLTRKWYVDYGGGIKNLGTTGSINLDLRQAQHFILTANAGTSIGIANFGGVGKSGTITINNCQNVVAFNAPFKFRIAQSGFSGTETFAYFCIASNNVRLVRT complement(1258664..1259296) hypothetical protein; CJS3_1360 N/A MNKISFINTLPKAPDMANPVDFDKDANNFVNALVPFSKEINDFIKDINILSASLIELNSNMISYTNLALEQIDSKTNINILKIENFCKDFQNVLEQKAKERLKEFTDECLTIVENKGYEMIERLNDNGVGADYIAISQSLTHSLSLERFIMERGFIKLRKEEALNLDDVNLSLEEQRRDINLAQKALENITNILSSQNEINLTLKGENNA complement(1259293..1259610) phage head-tail adaptor, putative; CJS3_1361 N/A MKANGFKHRVKIYKKEQSKNEFLESDFTQDLLFKEVYASCKNLSADVKELNSGLSLVATHEFELRFLELDFSYFLVFRDEKYEIVSLEDESQNKKFLKIKARKFQ complement(1259623..1260060) hypothetical protein; CJS3_1362 N/A MRLKALKDSKKELIDIQELRDFLRIDSDVFDANLKQFLKAGMNEFETRTNRILALNDYEVEFFNERVILAPFNALKNANFKAEFKTNGGVLYAIGCGNMIVNLGFEELPQDIKLWLKNYVLMAFDGVSMPKISSALITRYKIAYF complement(1260057..1260308) hypothetical protein; CJS3_1363 N/A MKKVVFKCCLSGNIFYKKGDEVLLEDSEALRLLEKGIVEIVEQEEQKQNTDEKSNTDKKPQEDQEMQEKPQKQNEKEDKKGKK complement(1260319..1261485) PHAGE_Entero_SfV: capsid; CJS3_1364; phage(gi19548995) 7e-30 MQKLRQEIGNLHEQMVALSNKAKNEQRSFSAEENTKYEALMQDFESKRKELSRAEAELEREKYLNEVVSPVLGQNPKGEDEDLNEENHMRSFVNYLRNGSIDNILKRNVLNESTAEQGGILVPTTLQSKIREKLNDLSVIRKIATVQKSSSNQIIPVFDEMGEFSWLGEQESFTEVSAKFSSLSIGAHKLGGIIKISEELLSDNIANLESFIVRKAAEKISKTEELSFINGDGNKKPTGLKNAKKAFTLASNQGITSNDIIDAFFSLDSAYRKNATWLVGDEFMKAIYKLTDNDNRPLWLPALSANGYDTILGKKVVYCSGVDGFGASKVPAFFGDFSFYEIWDRSSMSFTRLNELYSQNDLIGIKVRLRLDAKLMDNSAVCKIVCPA 1275328..1275340 attR N/A TTTTATCTTTTAA