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The map label for this gene is gcdB [H]

Identifier: 239618110

GI number: 239618110

Start: 1870720

End: 1871847

Strand: Reverse

Name: gcdB [H]

Synonym: Kole_1742

Alternate gene names: 239618110

Gene position: 1871847-1870720 (Counterclockwise)

Preceding gene: 239618111

Following gene: 239618109

Centisome position: 81.31

GC content: 45.83

Gene sequence:

>1128_bases
ATGCTGGAAGCGATCCTTAAATTCGTTAGCTCAACGGGGTTCGCACATATTTCGTGGCAAAACCTCGTTATGTTTGGAAT
CGCCGGCGCACTTTTGTACATCGCCGTTGCAAAAGAGGCCGAACCTCTTCTTCTTATCCCCATTGCCTTCGGAATGATTC
TGGCCAACATCCCAAACGAGGTAACCGGTCTTTTCGATCCGGGAATGGGACTCATGTGGTTCATTCAACAGGGCCTCTTC
AAAGGATTCTATCCCCCTCTTATCTTTCTGGGCATCGGTGCCCTCACAGATTTTTCTTTTATGCTTGCCAATCCAAAGAC
TATATTCCTCGGCGCAGCAGCCCAGGTGGGAATTTTTGTGACCTTCATAGTTGCAAGATTGATGGGTTTCTCTTTTGCTG
ACGCCGCGTCAATAGGTATCATCGGTGGTGCTGATGGTCCCACATCGATCTACGTTGCATCCCAATTCAACTCTCCCTAT
CTTTCGATAATCGCCATCGCTGCATACTCTTACATCGCCCTTATCCCCGTCATACAACCACCGATAATGAAACTTCTTAC
CACCAAAAAAGAAAGAAAGATAAAGATGGGTATGCAGTTAAGACACGTTTCAAAGCTCGAACGAATGATCTTCCCAATTG
CCAGCACGATAATAATCGCGCTACTCGTTCCAAAGGCATTACCTCTTATTGGCATGTTGATGCTGGGAAATTTCCTGCGC
GAATGTGGGGTGGCAAAATGGCTGGTAGAAGCGGCTTCCAAGTATATTGAATATACCGTTATAATACTTTTATGTCTCTC
AGTTGGCGCGACCGCGGAAGGAAGAGTTTTTTTGTCTTTGAACAGCTTAAAGATTGTTGGGCTGGGAGCAGCGGCTTTTA
TCATCGCTACTGCTTCTGGTATTATATTCGCGAAGGTGATGAATCTTTTCAGTAAACATAAAGTCAACCCGTTGATAGGT
GCAGCCGGGGTATCTGCCGTTCCTGATTCAGCAAGGGTTGCACAGCGTGTGGCACAAAAGGACGATCCAACTAACTATAT
CTTAATGCACGCTATGGGACCGAATGTAGCTGGAGTAATAGGTTCTGCAATAGCAGCAGGTGTTTTTCTATCCATAATTG
GTGTCTAA

Upstream 100 bases:

>100_bases
ACTTGCCGCTGCTCAGGCAGCAATAAAGCATGGTAAATAATGAACACTATTGCCGCGACTCCAATGCGGGTCGCGGCTTT
ATTTTTTTGGAGGGTTGATG

Downstream 100 bases:

>100_bases
TGGAGGGTACGCTTGATGGCGGAGAAAAAGAAATATGACATTATTTTCAACCATTCCTATTGTAAGATGTGTGGAATATG
TTACTGGATATGTCCAACCA

Product: sodium ion-translocating decarboxylase, beta subunit

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MLEAILKFVSSTGFAHISWQNLVMFGIAGALLYIAVAKEAEPLLLIPIAFGMILANIPNEVTGLFDPGMGLMWFIQQGLF
KGFYPPLIFLGIGALTDFSFMLANPKTIFLGAAAQVGIFVTFIVARLMGFSFADAASIGIIGGADGPTSIYVASQFNSPY
LSIIAIAAYSYIALIPVIQPPIMKLLTTKKERKIKMGMQLRHVSKLERMIFPIASTIIIALLVPKALPLIGMLMLGNFLR
ECGVAKWLVEAASKYIEYTVIILLCLSVGATAEGRVFLSLNSLKIVGLGAAAFIIATASGIIFAKVMNLFSKHKVNPLIG
AAGVSAVPDSARVAQRVAQKDDPTNYILMHAMGPNVAGVIGSAIAAGVFLSIIGV

Sequences:

>Translated_375_residues
MLEAILKFVSSTGFAHISWQNLVMFGIAGALLYIAVAKEAEPLLLIPIAFGMILANIPNEVTGLFDPGMGLMWFIQQGLF
KGFYPPLIFLGIGALTDFSFMLANPKTIFLGAAAQVGIFVTFIVARLMGFSFADAASIGIIGGADGPTSIYVASQFNSPY
LSIIAIAAYSYIALIPVIQPPIMKLLTTKKERKIKMGMQLRHVSKLERMIFPIASTIIIALLVPKALPLIGMLMLGNFLR
ECGVAKWLVEAASKYIEYTVIILLCLSVGATAEGRVFLSLNSLKIVGLGAAAFIIATASGIIFAKVMNLFSKHKVNPLIG
AAGVSAVPDSARVAQRVAQKDDPTNYILMHAMGPNVAGVIGSAIAAGVFLSIIGV
>Mature_375_residues
MLEAILKFVSSTGFAHISWQNLVMFGIAGALLYIAVAKEAEPLLLIPIAFGMILANIPNEVTGLFDPGMGLMWFIQQGLF
KGFYPPLIFLGIGALTDFSFMLANPKTIFLGAAAQVGIFVTFIVARLMGFSFADAASIGIIGGADGPTSIYVASQFNSPY
LSIIAIAAYSYIALIPVIQPPIMKLLTTKKERKIKMGMQLRHVSKLERMIFPIASTIIIALLVPKALPLIGMLMLGNFLR
ECGVAKWLVEAASKYIEYTVIILLCLSVGATAEGRVFLSLNSLKIVGLGAAAFIIATASGIIFAKVMNLFSKHKVNPLIG
AAGVSAVPDSARVAQRVAQKDDPTNYILMHAMGPNVAGVIGSAIAAGVFLSIIGV

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 39827; Mature: 39827

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00659 GLYCOSYL_HYDROL_F5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEAILKFVSSTGFAHISWQNLVMFGIAGALLYIAVAKEAEPLLLIPIAFGMILANIPNE
CHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCH
VTGLFDPGMGLMWFIQQGLFKGFYPPLIFLGIGALTDFSFMLANPKTIFLGAAAQVGIFV
HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCEEEEECHHHHHHHH
TFIVARLMGFSFADAASIGIIGGADGPTSIYVASQFNSPYLSIIAIAAYSYIALIPVIQP
HHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCH
PIMKLLTTKKERKIKMGMQLRHVSKLERMIFPIASTIIIALLVPKALPLIGMLMLGNFLR
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ECGVAKWLVEAASKYIEYTVIILLCLSVGATAEGRVFLSLNSLKIVGLGAAAFIIATASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCHHHHHHHHHHH
IIFAKVMNLFSKHKVNPLIGAAGVSAVPDSARVAQRVAQKDDPTNYILMHAMGPNVAGVI
HHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
GSAIAAGVFLSIIGV
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEAILKFVSSTGFAHISWQNLVMFGIAGALLYIAVAKEAEPLLLIPIAFGMILANIPNE
CHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCH
VTGLFDPGMGLMWFIQQGLFKGFYPPLIFLGIGALTDFSFMLANPKTIFLGAAAQVGIFV
HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCEEEEECHHHHHHHH
TFIVARLMGFSFADAASIGIIGGADGPTSIYVASQFNSPYLSIIAIAAYSYIALIPVIQP
HHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCH
PIMKLLTTKKERKIKMGMQLRHVSKLERMIFPIASTIIIALLVPKALPLIGMLMLGNFLR
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ECGVAKWLVEAASKYIEYTVIILLCLSVGATAEGRVFLSLNSLKIVGLGAAAFIIATASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCHHHHHHHHHHH
IIFAKVMNLFSKHKVNPLIGAAGVSAVPDSARVAQRVAQKDDPTNYILMHAMGPNVAGVI
HHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
GSAIAAGVFLSIIGV
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]