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The map label for this gene is ydeM [C]

Identifier: 239617164

GI number: 239617164

Start: 823703

End: 825001

Strand: Reverse

Name: ydeM [C]

Synonym: Kole_0770

Alternate gene names: 239617164

Gene position: 825001-823703 (Counterclockwise)

Preceding gene: 239617165

Following gene: 239617163

Centisome position: 35.84

GC content: 34.72

Gene sequence:

>1299_bases
ATGAATCATTACGTAAACAGAGAGATTGAATATTATACTACATCACTTTTGGGTAAGAATTTCGTGTTTTTTCCTGAAAC
GATTTCTCTATTAGAGATAGATAATAAGTTATTTGAGTTACTGAAAAAGGGTGAAACTTACCAGAACATCGTTCTTCCAA
AAGAGGTACTCGAAATTTTCGAACAATATGGTAGGTTGAATAAAACAAAAAGTGAAGAAACTAAGTTAAAACAAGTAACA
CATTTTCGAGGTTTAACCTTAGATGTAACACAAGAGTGTAACATGAGATGTGCTTATTGTTATGAAAATTCGAAAGAGTT
TGACCGATTATCTCGTATGGATTCTGAAACAGCAAAAAAAGCAATTATTAAATTATTGAAGCCAGACATGGATAATCAAA
GAAGAAGACTGACATTCTTTGGTGGGGAGCCTTTGCTAAATTTCGATTTGATAGAGATGATAGTATCATATGTAGAAAAA
ATGTGGCCAGATCGATTTTCCTTTGGTATAACAACAAATGCTACTTTGATAGATACAAAAATTGCAGATTTTCTTACTAA
GAAAAAATTCAGTGTTTTAGTTAGTCTTGATGGCCTAGAGAGAACCCAGAATATCTTACGTCCTCTAAAAGACTCAGAGA
ACAGTTTTATCAAAACGATTCATGGTATAAAACTGTTGAACGAAAAGGGGCTAAAACCGTCAATAAGATGTACTTCAACA
TCTGTGAATTCAGATTTATCGAATTTTGCAGAAGTCTTCAAAGAACTATCTATTAGGAAACTCTATGTTGCCGTTGTTAG
CACCAGTAATGAACACATGATTCCCGAAAGCTTCGAATTAACTTCCAGCTATCAAAAACTCTATGAGTATTTTAGACACA
AGAATGGTACTTTTCTTGGATTGGTGTCAAGCACAGCTAAGAAAATTGAATCAAAAGAATTCTCCGCAAATTGCACTGCG
GGGCGTACGATGGTTACTCTGGCTAGTAATGGTGATGTGTATATTTGCCATAGAAAGGTCGGTGTATCTAGCTTCTTCAT
TGGAAATGTCATCTCAAATACATTTGAGGAGATAGTACTAACATCTAAGTCAAAGTTGAATAAATTGAGTTCAAAAATAG
AAGAATGCAAGAACTGTTGGGCTCGTAATTTATGTTCTGGTATTTGCATGGCTACTATCGGACTACCTGAAAAGCATTTT
CGTGTTTACTGTGAGTTTGTGAAAAAAGCGATCGAATTGTCATTTGTTGAGGTAGCGCGAAAAAAATCGAACTCTGTTCC
CACCACAACAGGGAGTTAG

Upstream 100 bases:

>100_bases
TCTCATGGATAATTGGAGAAGCTGATCCCATGATTGACGAAGCTCTGCGAATTGTTGAAAGGGCATCAGAAGAATGAAAG
GGTATGGAGGTGAAGTGAAT

Downstream 100 bases:

>100_bases
CTTTGGAAGATCAAGGCCTATTTCTTGATTCTTTCATTCAATACTATCGAGTAGTGTACTTTGAAAATTGTTAATTTTTA
ATGCCCATATGATGCTTTTC

Product: Radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MNHYVNREIEYYTTSLLGKNFVFFPETISLLEIDNKLFELLKKGETYQNIVLPKEVLEIFEQYGRLNKTKSEETKLKQVT
HFRGLTLDVTQECNMRCAYCYENSKEFDRLSRMDSETAKKAIIKLLKPDMDNQRRRLTFFGGEPLLNFDLIEMIVSYVEK
MWPDRFSFGITTNATLIDTKIADFLTKKKFSVLVSLDGLERTQNILRPLKDSENSFIKTIHGIKLLNEKGLKPSIRCTST
SVNSDLSNFAEVFKELSIRKLYVAVVSTSNEHMIPESFELTSSYQKLYEYFRHKNGTFLGLVSSTAKKIESKEFSANCTA
GRTMVTLASNGDVYICHRKVGVSSFFIGNVISNTFEEIVLTSKSKLNKLSSKIEECKNCWARNLCSGICMATIGLPEKHF
RVYCEFVKKAIELSFVEVARKKSNSVPTTTGS

Sequences:

>Translated_432_residues
MNHYVNREIEYYTTSLLGKNFVFFPETISLLEIDNKLFELLKKGETYQNIVLPKEVLEIFEQYGRLNKTKSEETKLKQVT
HFRGLTLDVTQECNMRCAYCYENSKEFDRLSRMDSETAKKAIIKLLKPDMDNQRRRLTFFGGEPLLNFDLIEMIVSYVEK
MWPDRFSFGITTNATLIDTKIADFLTKKKFSVLVSLDGLERTQNILRPLKDSENSFIKTIHGIKLLNEKGLKPSIRCTST
SVNSDLSNFAEVFKELSIRKLYVAVVSTSNEHMIPESFELTSSYQKLYEYFRHKNGTFLGLVSSTAKKIESKEFSANCTA
GRTMVTLASNGDVYICHRKVGVSSFFIGNVISNTFEEIVLTSKSKLNKLSSKIEECKNCWARNLCSGICMATIGLPEKHF
RVYCEFVKKAIELSFVEVARKKSNSVPTTTGS
>Mature_432_residues
MNHYVNREIEYYTTSLLGKNFVFFPETISLLEIDNKLFELLKKGETYQNIVLPKEVLEIFEQYGRLNKTKSEETKLKQVT
HFRGLTLDVTQECNMRCAYCYENSKEFDRLSRMDSETAKKAIIKLLKPDMDNQRRRLTFFGGEPLLNFDLIEMIVSYVEK
MWPDRFSFGITTNATLIDTKIADFLTKKKFSVLVSLDGLERTQNILRPLKDSENSFIKTIHGIKLLNEKGLKPSIRCTST
SVNSDLSNFAEVFKELSIRKLYVAVVSTSNEHMIPESFELTSSYQKLYEYFRHKNGTFLGLVSSTAKKIESKEFSANCTA
GRTMVTLASNGDVYICHRKVGVSSFFIGNVISNTFEEIVLTSKSKLNKLSSKIEECKNCWARNLCSGICMATIGLPEKHF
RVYCEFVKKAIELSFVEVARKKSNSVPTTTGS

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 49449; Mature: 49449

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHYVNREIEYYTTSLLGKNFVFFPETISLLEIDNKLFELLKKGETYQNIVLPKEVLEIF
CCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHH
EQYGRLNKTKSEETKLKQVTHFRGLTLDVTQECNMRCAYCYENSKEFDRLSRMDSETAKK
HHHCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCHHHHHHHHCCHHHHHH
AIIKLLKPDMDNQRRRLTFFGGEPLLNFDLIEMIVSYVEKMWPDRFSFGITTNATLIDTK
HHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCEEEHHH
IADFLTKKKFSVLVSLDGLERTQNILRPLKDSENSFIKTIHGIKLLNEKGLKPSIRCTST
HHHHHHHHHHEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC
SVNSDLSNFAEVFKELSIRKLYVAVVSTSNEHMIPESFELTSSYQKLYEYFRHKNGTFLG
CHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
LVSSTAKKIESKEFSANCTAGRTMVTLASNGDVYICHRKVGVSSFFIGNVISNTFEEIVL
EHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
TSKSKLNKLSSKIEECKNCWARNLCSGICMATIGLPEKHFRVYCEFVKKAIELSFVEVAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KKSNSVPTTTGS
HCCCCCCCCCCC
>Mature Secondary Structure
MNHYVNREIEYYTTSLLGKNFVFFPETISLLEIDNKLFELLKKGETYQNIVLPKEVLEIF
CCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHH
EQYGRLNKTKSEETKLKQVTHFRGLTLDVTQECNMRCAYCYENSKEFDRLSRMDSETAKK
HHHCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCHHHHHHHHCCHHHHHH
AIIKLLKPDMDNQRRRLTFFGGEPLLNFDLIEMIVSYVEKMWPDRFSFGITTNATLIDTK
HHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCEEEHHH
IADFLTKKKFSVLVSLDGLERTQNILRPLKDSENSFIKTIHGIKLLNEKGLKPSIRCTST
HHHHHHHHHHEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC
SVNSDLSNFAEVFKELSIRKLYVAVVSTSNEHMIPESFELTSSYQKLYEYFRHKNGTFLG
CHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
LVSSTAKKIESKEFSANCTAGRTMVTLASNGDVYICHRKVGVSSFFIGNVISNTFEEIVL
EHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
TSKSKLNKLSSKIEECKNCWARNLCSGICMATIGLPEKHFRVYCEFVKKAIELSFVEVAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KKSNSVPTTTGS
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]