| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
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The map label for this gene is fliD [H]
Identifier: 238925600
GI number: 238925600
Start: 3092978
End: 3095671
Strand: Reverse
Name: fliD [H]
Synonym: EUBREC_3256
Alternate gene names: 238925600
Gene position: 3095671-3092978 (Counterclockwise)
Preceding gene: 238925601
Following gene: 238925599
Centisome position: 89.74
GC content: 45.88
Gene sequence:
>2694_bases ATGGCAATCAGATTATCGGGAATGAATTCGGGCCTCGATACGGATTCAATTGTCAAAGCACTTGTATCAGGCTATACAAC CAAGAAAGAAAAATATGAAAAAGCACAGACAAAGCTTGGCTGGAAGCAGGAATCCTGGAAGTCACTGAATACCAAGGTGT ACAGTATGTACAGTAATATATCAAACCTGCGATTTTCAAGTGCCTACAACCTTAAAAAGACATCGGTTTCAGACATGACA AAGGCCACAGTTACAGCATCATCAACAGCTCCAAATGGCACGCAGTCGCTTAAAATAAAGGAGACCGCAAAGGCAGGCTC GCTCACAGGAGCACAGATAAATGCCTCAAGCTCAACGACCACACTGGCTCAGCTTGGCTATACAGGTGGAGATGCGCAGA TAAATGTAAATACAGGCGGCACCACAAAGACTATCACGCTGAGCGCGACATCCACAATGTCAGACGTGGAGAAGCAGCTC AAGGAGACAGGACTTAATGCCAGCTATGACAGCAACTACAAGCGTTTTTACATAAGCTCAAAGGACACAGGTGTAGAGAA TGACTTCACACTCACAGGAGCAAATGCCGCAGGAGCGAGCGCACTCTATAAGCTCGGAATCGCAGTGGGAGCATCGGCAG ACGGAACCAGACCAAACCCATATGGAGAGTACGCAGGCCTGTCCGGTAAAAACAACGGAAACACACAGCAGAATATAGAA GACGCCAGAAACGCATATGTCACAGCAGCAGACAATGTTGCAAAGTACAATGCACAGAGCAGCAACCTACTCAATGCCAT AACATATGGCAATGCTTATGCGGATGTTCAGGACTTTTATGCAGCACACAGCAGTGCAGACAAGACAAAGCTTGAAACAC TTGCAAAGCTTGGCTCAGGAAGAGACTCAGCCGTCATAATGAAAAACAGTGATGACAGCTACACCACATACAGTCTGACA ACTGCAAAAGACGCAAAGGGCAATGCGGTATACAAATCAGCAGACGGCAAGTACATCTCAGCAGAAGAGACATATACTGC CGACGGCAAAACATACAAGAAGGATTCCGATGGCAATTATATCAACGTAGCTGATGAAACAGATAAATACAGCGGAGATA CAGCAAAGCTGACCAAAAACGTGGCATATCATGAGGTTACAGAAAAAATATCATACACATCCACAACCGGCGAGGGCGAT GACGCCAAGGAAGTGTCATACACAAAGGTCGGAGACACTGATGAAAAGCTTCAGGATGCAGACGGAAAAGTATATACCAA GCGTGCAGACGGCAAATATTATGCAGACGGTGAACCGGATGATTCAAAAAACGGCATAACAATCAAATCAAAGGCAGATT ACACATCCAAGAGAGAGCCGCTTATAAATGCGGAGGCTGCAAACACAGCCTATACAGCTCTCACAAATGGTATATCAGAG GCTGATCTGAACACATACACAGCAAACCTGTCAACAGTCACAGCCTTTGAATCATCAGAGGATACAGTGCTGAAAAAGGA TGATGATTACACCATAAGCAAGCTCACAGAGGCTGTCCATAGTGCGTATGCGGACAACGGCGGAAAAGCCGGAGTGCAGG CACTTATATCAGGAACCGGCGCATATGCATCAGGCAGTGATGCAGTAGATAACAGCTACGCGGGCAGAGTGTCAGCGCTC ACAACAGCAGCACAGACAGCACAGGAGACCGTAGACAAAAACAGCATCGTAAAGGATCTTGCAGCAATAAAGGACACAAA TTCAGAGGAGTACAAAGCAGCCCTTTCAAAGCTGGTAGATGAAGTGGATGCAGCGTATGACCTGTCATCAAGCGCACAGT ACAATACCGATGCCAGCAAGATAGACGGAAAAGACGCCGAAATTGAGTTAAATGGCGTGAAATACACCGGAGCCAGCAAC AGCTTCAACATCAATGGACTGAACATTACAGCACTCTCAAAGACATCCGGCAATGATGAAATCAGCATCACCACAGCCAC GGATACACAGGGCATTTATGACAAGATAAAGGACTTCCTGACAGAGTACAATAACGTCATAAACGAGATGACCAAGCTCT ACAACGCAGCATCAGCAGGCAGCTATGAGCCGCTGACAGATGATGAAAAGGAAAACATGTCCGACAAAGAGATTGAGAAG TGGGAGCAGAAAATCAAGGATTCCCTGCTCAAAAACGATACAACTCTCAGCGGCGTAATGACAGCCATGCAGTCAGCCAT GTCATCAGCAGTGGAGATAAACGGCAAGAAATACTCATTCTCAAGCTTCGGAATCCATACGCTTGGCTACCTCAATGCTG CAGACAATGAGCAGAACGCATACCATATCGACGGAGATGAGGATGACACCAACACCTCAGGCAACACAGATAAGCTCATG GCGGCAATCAATAATGACCTTGACAATGTCATGACATTTATGCAGCAAATCTCCAACAACCTCTACAAGGCAATTGGAGA TAAGATGTCATCAACATCACTGAGCTCAGCGTTTACCATATACAACGACAAGCAGATGAGCACAGAGTACAGTAATTACA CAAAGCTTATCAAGGAGTGGGAGACAAAGATATCAGACAAGGAAGACTATTACTATAAAAAGTTCTCCGCAATGGAGAGC TCGCTCGCCAAGCTCAACAGTACACAGAGCTCACTAAGCAGCTATTTCTCATAA
Upstream 100 bases:
>100_bases AGTCATCAAAGAGTTCCCGCCGGAGAAGACACTTGATATGATAGCGAAGGTCTGGGAGATGGCAGGACTCATGGTAGATG AGAAGAGATAGGAGGACATC
Downstream 100 bases:
>100_bases AGAATAACCATACATGAGTCAGAATGTGTGAAATATATTGAAAATGTACATTTCAACAAGCAGTAAATGTACGAAATCAG GGAGGTAACAAATGTTACAA
Product: flagellar capping protein
Products: NA
Alternate protein names: HAP2; Filament cap protein [H]
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MAIRLSGMNSGLDTDSIVKALVSGYTTKKEKYEKAQTKLGWKQESWKSLNTKVYSMYSNISNLRFSSAYNLKKTSVSDMT KATVTASSTAPNGTQSLKIKETAKAGSLTGAQINASSSTTTLAQLGYTGGDAQINVNTGGTTKTITLSATSTMSDVEKQL KETGLNASYDSNYKRFYISSKDTGVENDFTLTGANAAGASALYKLGIAVGASADGTRPNPYGEYAGLSGKNNGNTQQNIE DARNAYVTAADNVAKYNAQSSNLLNAITYGNAYADVQDFYAAHSSADKTKLETLAKLGSGRDSAVIMKNSDDSYTTYSLT TAKDAKGNAVYKSADGKYISAEETYTADGKTYKKDSDGNYINVADETDKYSGDTAKLTKNVAYHEVTEKISYTSTTGEGD DAKEVSYTKVGDTDEKLQDADGKVYTKRADGKYYADGEPDDSKNGITIKSKADYTSKREPLINAEAANTAYTALTNGISE ADLNTYTANLSTVTAFESSEDTVLKKDDDYTISKLTEAVHSAYADNGGKAGVQALISGTGAYASGSDAVDNSYAGRVSAL TTAAQTAQETVDKNSIVKDLAAIKDTNSEEYKAALSKLVDEVDAAYDLSSSAQYNTDASKIDGKDAEIELNGVKYTGASN SFNINGLNITALSKTSGNDEISITTATDTQGIYDKIKDFLTEYNNVINEMTKLYNAASAGSYEPLTDDEKENMSDKEIEK WEQKIKDSLLKNDTTLSGVMTAMQSAMSSAVEINGKKYSFSSFGIHTLGYLNAADNEQNAYHIDGDEDDTNTSGNTDKLM AAINNDLDNVMTFMQQISNNLYKAIGDKMSSTSLSSAFTIYNDKQMSTEYSNYTKLIKEWETKISDKEDYYYKKFSAMES SLAKLNSTQSSLSSYFS
Sequences:
>Translated_897_residues MAIRLSGMNSGLDTDSIVKALVSGYTTKKEKYEKAQTKLGWKQESWKSLNTKVYSMYSNISNLRFSSAYNLKKTSVSDMT KATVTASSTAPNGTQSLKIKETAKAGSLTGAQINASSSTTTLAQLGYTGGDAQINVNTGGTTKTITLSATSTMSDVEKQL KETGLNASYDSNYKRFYISSKDTGVENDFTLTGANAAGASALYKLGIAVGASADGTRPNPYGEYAGLSGKNNGNTQQNIE DARNAYVTAADNVAKYNAQSSNLLNAITYGNAYADVQDFYAAHSSADKTKLETLAKLGSGRDSAVIMKNSDDSYTTYSLT TAKDAKGNAVYKSADGKYISAEETYTADGKTYKKDSDGNYINVADETDKYSGDTAKLTKNVAYHEVTEKISYTSTTGEGD DAKEVSYTKVGDTDEKLQDADGKVYTKRADGKYYADGEPDDSKNGITIKSKADYTSKREPLINAEAANTAYTALTNGISE ADLNTYTANLSTVTAFESSEDTVLKKDDDYTISKLTEAVHSAYADNGGKAGVQALISGTGAYASGSDAVDNSYAGRVSAL TTAAQTAQETVDKNSIVKDLAAIKDTNSEEYKAALSKLVDEVDAAYDLSSSAQYNTDASKIDGKDAEIELNGVKYTGASN SFNINGLNITALSKTSGNDEISITTATDTQGIYDKIKDFLTEYNNVINEMTKLYNAASAGSYEPLTDDEKENMSDKEIEK WEQKIKDSLLKNDTTLSGVMTAMQSAMSSAVEINGKKYSFSSFGIHTLGYLNAADNEQNAYHIDGDEDDTNTSGNTDKLM AAINNDLDNVMTFMQQISNNLYKAIGDKMSSTSLSSAFTIYNDKQMSTEYSNYTKLIKEWETKISDKEDYYYKKFSAMES SLAKLNSTQSSLSSYFS >Mature_896_residues AIRLSGMNSGLDTDSIVKALVSGYTTKKEKYEKAQTKLGWKQESWKSLNTKVYSMYSNISNLRFSSAYNLKKTSVSDMTK ATVTASSTAPNGTQSLKIKETAKAGSLTGAQINASSSTTTLAQLGYTGGDAQINVNTGGTTKTITLSATSTMSDVEKQLK ETGLNASYDSNYKRFYISSKDTGVENDFTLTGANAAGASALYKLGIAVGASADGTRPNPYGEYAGLSGKNNGNTQQNIED ARNAYVTAADNVAKYNAQSSNLLNAITYGNAYADVQDFYAAHSSADKTKLETLAKLGSGRDSAVIMKNSDDSYTTYSLTT AKDAKGNAVYKSADGKYISAEETYTADGKTYKKDSDGNYINVADETDKYSGDTAKLTKNVAYHEVTEKISYTSTTGEGDD AKEVSYTKVGDTDEKLQDADGKVYTKRADGKYYADGEPDDSKNGITIKSKADYTSKREPLINAEAANTAYTALTNGISEA DLNTYTANLSTVTAFESSEDTVLKKDDDYTISKLTEAVHSAYADNGGKAGVQALISGTGAYASGSDAVDNSYAGRVSALT TAAQTAQETVDKNSIVKDLAAIKDTNSEEYKAALSKLVDEVDAAYDLSSSAQYNTDASKIDGKDAEIELNGVKYTGASNS FNINGLNITALSKTSGNDEISITTATDTQGIYDKIKDFLTEYNNVINEMTKLYNAASAGSYEPLTDDEKENMSDKEIEKW EQKIKDSLLKNDTTLSGVMTAMQSAMSSAVEINGKKYSFSSFGIHTLGYLNAADNEQNAYHIDGDEDDTNTSGNTDKLMA AINNDLDNVMTFMQQISNNLYKAIGDKMSSTSLSSAFTIYNDKQMSTEYSNYTKLIKEWETKISDKEDYYYKKFSAMESS LAKLNSTQSSLSSYFS
Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the
COG id: COG1345
COG function: function code N; Flagellar capping protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010810 - InterPro: IPR010809 - InterPro: IPR003481 [H]
Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]
EC number: NA
Molecular weight: Translated: 96543; Mature: 96412
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRLSGMNSGLDTDSIVKALVSGYTTKKEKYEKAQTKLGWKQESWKSLNTKVYSMYSNI CEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH SNLRFSSAYNLKKTSVSDMTKATVTASSTAPNGTQSLKIKETAKAGSLTGAQINASSSTT HHCEECCCCCCCCCCHHHHHHEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCH TLAQLGYTGGDAQINVNTGGTTKTITLSATSTMSDVEKQLKETGLNASYDSNYKRFYISS HHHHHCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC KDTGVENDFTLTGANAAGASALYKLGIAVGASADGTRPNPYGEYAGLSGKNNGNTQQNIE CCCCCCCCEEEECCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH DARNAYVTAADNVAKYNAQSSNLLNAITYGNAYADVQDFYAAHSSADKTKLETLAKLGSG HHHCEEEEECCCHHHCCCCCCCCEEHEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC RDSAVIMKNSDDSYTTYSLTTAKDAKGNAVYKSADGKYISAEETYTADGKTYKKDSDGNY CCCEEEEECCCCCEEEEEEEECCCCCCCEEEECCCCCEEECCCCEECCCCEECCCCCCCE INVADETDKYSGDTAKLTKNVAYHEVTEKISYTSTTGEGDDAKEVSYTKVGDTDEKLQDA EEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCHHHHHCC DGKVYTKRADGKYYADGEPDDSKNGITIKSKADYTSKREPLINAEAANTAYTALTNGISE CCCEEEEECCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC ADLNTYTANLSTVTAFESSEDTVLKKDDDYTISKLTEAVHSAYADNGGKAGVQALISGTG CCCCEEEECCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC AYASGSDAVDNSYAGRVSALTTAAQTAQETVDKNSIVKDLAAIKDTNSEEYKAALSKLVD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EVDAAYDLSSSAQYNTDASKIDGKDAEIELNGVKYTGASNSFNINGLNITALSKTSGNDE HHHHHHCCCCCCCCCCCHHHCCCCCCEEEECCEEEECCCCCEEECCEEEEEEECCCCCCE ISITTATDTQGIYDKIKDFLTEYNNVINEMTKLYNAASAGSYEPLTDDEKENMSDKEIEK EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHH WEQKIKDSLLKNDTTLSGVMTAMQSAMSSAVEINGKKYSFSSFGIHTLGYLNAADNEQNA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCEEEECCCCCHHHEEEECCCCCCCC YHIDGDEDDTNTSGNTDKLMAAINNDLDNVMTFMQQISNNLYKAIGDKMSSTSLSSAFTI EECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEE YNDKQMSTEYSNYTKLIKEWETKISDKEDYYYKKFSAMESSLAKLNSTQSSLSSYFS ECCCHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AIRLSGMNSGLDTDSIVKALVSGYTTKKEKYEKAQTKLGWKQESWKSLNTKVYSMYSNI EEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH SNLRFSSAYNLKKTSVSDMTKATVTASSTAPNGTQSLKIKETAKAGSLTGAQINASSSTT HHCEECCCCCCCCCCHHHHHHEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCH TLAQLGYTGGDAQINVNTGGTTKTITLSATSTMSDVEKQLKETGLNASYDSNYKRFYISS HHHHHCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC KDTGVENDFTLTGANAAGASALYKLGIAVGASADGTRPNPYGEYAGLSGKNNGNTQQNIE CCCCCCCCEEEECCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH DARNAYVTAADNVAKYNAQSSNLLNAITYGNAYADVQDFYAAHSSADKTKLETLAKLGSG HHHCEEEEECCCHHHCCCCCCCCEEHEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC RDSAVIMKNSDDSYTTYSLTTAKDAKGNAVYKSADGKYISAEETYTADGKTYKKDSDGNY CCCEEEEECCCCCEEEEEEEECCCCCCCEEEECCCCCEEECCCCEECCCCEECCCCCCCE INVADETDKYSGDTAKLTKNVAYHEVTEKISYTSTTGEGDDAKEVSYTKVGDTDEKLQDA EEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCHHHHHCC DGKVYTKRADGKYYADGEPDDSKNGITIKSKADYTSKREPLINAEAANTAYTALTNGISE CCCEEEEECCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC ADLNTYTANLSTVTAFESSEDTVLKKDDDYTISKLTEAVHSAYADNGGKAGVQALISGTG CCCCEEEECCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC AYASGSDAVDNSYAGRVSALTTAAQTAQETVDKNSIVKDLAAIKDTNSEEYKAALSKLVD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EVDAAYDLSSSAQYNTDASKIDGKDAEIELNGVKYTGASNSFNINGLNITALSKTSGNDE HHHHHHCCCCCCCCCCCHHHCCCCCCEEEECCEEEECCCCCEEECCEEEEEEECCCCCCE ISITTATDTQGIYDKIKDFLTEYNNVINEMTKLYNAASAGSYEPLTDDEKENMSDKEIEK EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHH WEQKIKDSLLKNDTTLSGVMTAMQSAMSSAVEINGKKYSFSSFGIHTLGYLNAADNEQNA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCEEEECCCCCHHHEEEECCCCCCCC YHIDGDEDDTNTSGNTDKLMAAINNDLDNVMTFMQQISNNLYKAIGDKMSSTSLSSAFTI EECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEE YNDKQMSTEYSNYTKLIKEWETKISDKEDYYYKKFSAMESSLAKLNSTQSSLSSYFS ECCCHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8195064; 9384377 [H]