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The map label for this gene is ytrA [H]

Identifier: 238925437

GI number: 238925437

Start: 2954713

End: 2955084

Strand: Reverse

Name: ytrA [H]

Synonym: EUBREC_3092

Alternate gene names: 238925437

Gene position: 2955084-2954713 (Counterclockwise)

Preceding gene: 238925438

Following gene: 238925436

Centisome position: 85.66

GC content: 43.55

Gene sequence:

>372_bases
ATGAAAATAGTCATTTCAACAACAGTTAGTATGCCGATATATGAGCAGATTATAAATCAGATACGCGATGCAGTGGTAAG
CGGTGAGCTTAAGGCAGGCGATGGCATGCCGTCAATCAGAGTGCTGGCAAAGGAGCTGGCAGTCAGTGTGATTACAACAA
AGCGTGCTTATGAGGAGCTGGAAAAGGAAGGTGTAATAGAGTCGGTGCCGGGGCGTGGATTTTACGTGTGCGAGCAGAAA
AATGATCTTTTGCGTGAAAAACAGATGATGAATCTTGAGAACAGGATGTCAGAACTGCTTGCAGATTGTGAGAATGCCGG
AATGACCTTGAAGGATATAATAGATATGGTTCGTGTATTGGGAGAAAAATAA

Upstream 100 bases:

>100_bases
TATCCTGCAGGAAAAAATATTATGACGATATTGTTCGCTGTATGGCAGATTACGAGTTTGCGGAATCAAAAAAAGACAAA
AAAATTGCATAGAGGTGTGT

Downstream 100 bases:

>100_bases
TGGATGAGACAATTATAAAAATAGAAAATGCCGCTTTAAAATTAAAAAAATTTATGATTAAGCCCGCAAATTTAGAAATA
CCAAAGGGCTACATTGTAGG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKIVISTTVSMPIYEQIINQIRDAVVSGELKAGDGMPSIRVLAKELAVSVITTKRAYEELEKEGVIESVPGRGFYVCEQK
NDLLREKQMMNLENRMSELLADCENAGMTLKDIIDMVRVLGEK

Sequences:

>Translated_123_residues
MKIVISTTVSMPIYEQIINQIRDAVVSGELKAGDGMPSIRVLAKELAVSVITTKRAYEELEKEGVIESVPGRGFYVCEQK
NDLLREKQMMNLENRMSELLADCENAGMTLKDIIDMVRVLGEK
>Mature_123_residues
MKIVISTTVSMPIYEQIINQIRDAVVSGELKAGDGMPSIRVLAKELAVSVITTKRAYEELEKEGVIESVPGRGFYVCEQK
NDLLREKQMMNLENRMSELLADCENAGMTLKDIIDMVRVLGEK

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=96, Percent_Identity=32.2916666666667, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13778; Mature: 13778

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVISTTVSMPIYEQIINQIRDAVVSGELKAGDGMPSIRVLAKELAVSVITTKRAYEEL
CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKEGVIESVPGRGFYVCEQKNDLLREKQMMNLENRMSELLADCENAGMTLKDIIDMVRVL
HHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GEK
CCC
>Mature Secondary Structure
MKIVISTTVSMPIYEQIINQIRDAVVSGELKAGDGMPSIRVLAKELAVSVITTKRAYEEL
CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKEGVIESVPGRGFYVCEQKNDLLREKQMMNLENRMSELLADCENAGMTLKDIIDMVRVL
HHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GEK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]