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The map label for this gene is ydiF [H]

Identifier: 238925289

GI number: 238925289

Start: 2824461

End: 2826509

Strand: Reverse

Name: ydiF [H]

Synonym: EUBREC_2943

Alternate gene names: 238925289

Gene position: 2826509-2824461 (Counterclockwise)

Preceding gene: 238925290

Following gene: 238925288

Centisome position: 81.94

GC content: 49.29

Gene sequence:

>2049_bases
ATGCTCTACCAGATAAGTAATGGCGCTGTCGCATTTGGCGACGACGTCATTTTGCATAGTATAGATTTTGAAATCAGAAA
CACAGAAAAGATAGCGATAGTCGGCAGAAACGGCTGTGGCAAGACAACACTTTTAAAGCTCATTTCAGGCGAGGTTGAGA
TGGAAAAGCTCGACAGCGATGAGAGCGCCTTTATTGCAAAGGCAGGAAACCCCGAGATAGGGTATCTGAAGCAGATTGCG
TTTGATGATCCTGATGTGACACTCGAGCAGGAGGTGCGCAAATGCTTCGTGAAAATGGACGAGCGAAAGGCAGAGCTTGC
GCGCGCGGCGGCAGAGCTCGAGCATGATTATTCCGATGAAAAGGTAGCCAGATATACCGCGATGGAGGAGGCCTTCAAGG
ATGATGGTGGCTACTATTATGAGAAGGAATATGAGGTCATGATCCGCAAGTTCGGCTTCTCAGATGATGAGCGCAAAAAG
CCAATCCGTGACTTTTCCGGAGGTCAGCAGACCAAGATAGCATTCATAAAGCTGCTTTTGTCAAAGCCTGACATACTGCT
TCTCGACGAGCCGACCAACCACCTCGATGTCACGACGATTGAGTGGCTTGAGGGCTATCTGAAGTCGTACCCGAAGGCAG
TGGTTGTCGTATCCCATGACCGTATGTTTCTCGACAATGTGGTAGATGTGGTATACGAGATAGAGTACGGCACAGCAAGG
CGCTATCCGGGTAATTATACCAATTTTATCGCCCGCAAAAAGGAAAACTACGACAAGCAGATGAAGGATCACATCGCCCA
GCAGAAGGAGATAGAGCGTTTACAGCGTATGGTTACGCGATTCAAGGGCAAGCCGACCAAGACAGCCATGGCACAGTCAA
AGCAGAAGGCTATCGACCGCATGGTGATTATCGAGGCACCGGACAAGTACGACAACAAGACCTTCCATGCCAATTTCCAG
CCCGAAAAGGAGACCGGAAACGATGTGCTTTATACATCAGAGCTTGCAATCGGCTATGACCATCCGCTCTCCGTAGTGTC
GCTTGATTTGAAAAGAGGCGAAAAGCTTGGCATACTCGGCGGAAACGGACTTGGAAAATCGACATTTTTAAAGACTATCG
TGGGTAAGATCCCTGCACTTTCAGGCGAGTACCGCTTCGGAACCAACGTGCAGATAGGATATTTCGACCAGCAGATGGCC
ATGTATACAAGCAGCAAGACTGTGCTCGATGATTTTTGGGATGAGTATCCGAATCTCACGGAAACCGAGGCCAGAAATGC
ACTCGGAGCCTTCCTTTTTTCAGGGGAGGACGTGTTCAAGAACGTAAATATGCTATCTGGAGGAGAAAAGGTCAGACTGG
CGCTTTGCAAGATTTTAAAGACCAGACCGAACGTGCTCGTGCTCGATGAGCCAACTAACCATATGGATATCGTAGGCAAG
GAAACGCTGGAGAGCATGCTTAAGGACTACAAGGGCACACTGATTTTTGTATCACACGACAGATATTTTGTGAAAAAGGT
AGCCACACAGCTGCTTGTGTTCGAGGATGGCACGACCAATCTCTATCAGTTTGGCTATGAGCAGTATCAGGAAAAGCTCG
ATCGTGAGGCTGAGGAAAGCAAAAATGTATACAGAGGCAATGCAATATTTGGCGGCGCGATAAGCCAGAACGTCAGCAGT
CAGACAGGCAGTGATGCAAACCGGAGCACGTCACAAACCGTTGCAGCAGGTAATGTGGGCGAAAGCACCAATGCAAATAG
CGCAGCCCAGGCTGGCGGCATGGCTGTCTCATCAACCGGCAAGGCATACTACAACCCGGGCAAGGAGCGCTCAAAGATAC
AAAAAAAGGTCAAAAAGGCCGAGGAGGACCTGGCGGTCAAGGAAGCAAAGCTGGATGAGCTCAAGGCCGAGCTCATGAAG
CCGGAGTATCAGTCAAGCTACTCAAAGCTCACGGAAATCCAGAACGAAATAGACTCTCTCGAGGAAGAAATCCTTATTGA
TATGGAGGCGTGGGAGGAGCTTTCCTCTCAGCTTGAGGCACTGGGATAG

Upstream 100 bases:

>100_bases
GCTCAGCCATGGTGGTATTTCGGGACGTACTGCAACACAGTTTGTCAACTACATTATGGCTAACAATTAAGCAGCAGGCA
TAAGCATGAAAGGATAGTAT

Downstream 100 bases:

>100_bases
GTTAGATGCGCTGTGGTAGCTTAGAAACGTTGTGATAGCTTAGATGTGCTGTTGTAGTTGAGAAATGTTGCGATAGTGTA
TAAAAAATCACTCGACTTGA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 682; Mature: 682

Protein sequence:

>682_residues
MLYQISNGAVAFGDDVILHSIDFEIRNTEKIAIVGRNGCGKTTLLKLISGEVEMEKLDSDESAFIAKAGNPEIGYLKQIA
FDDPDVTLEQEVRKCFVKMDERKAELARAAAELEHDYSDEKVARYTAMEEAFKDDGGYYYEKEYEVMIRKFGFSDDERKK
PIRDFSGGQQTKIAFIKLLLSKPDILLLDEPTNHLDVTTIEWLEGYLKSYPKAVVVVSHDRMFLDNVVDVVYEIEYGTAR
RYPGNYTNFIARKKENYDKQMKDHIAQQKEIERLQRMVTRFKGKPTKTAMAQSKQKAIDRMVIIEAPDKYDNKTFHANFQ
PEKETGNDVLYTSELAIGYDHPLSVVSLDLKRGEKLGILGGNGLGKSTFLKTIVGKIPALSGEYRFGTNVQIGYFDQQMA
MYTSSKTVLDDFWDEYPNLTETEARNALGAFLFSGEDVFKNVNMLSGGEKVRLALCKILKTRPNVLVLDEPTNHMDIVGK
ETLESMLKDYKGTLIFVSHDRYFVKKVATQLLVFEDGTTNLYQFGYEQYQEKLDREAEESKNVYRGNAIFGGAISQNVSS
QTGSDANRSTSQTVAAGNVGESTNANSAAQAGGMAVSSTGKAYYNPGKERSKIQKKVKKAEEDLAVKEAKLDELKAELMK
PEYQSSYSKLTEIQNEIDSLEEEILIDMEAWEELSSQLEALG

Sequences:

>Translated_682_residues
MLYQISNGAVAFGDDVILHSIDFEIRNTEKIAIVGRNGCGKTTLLKLISGEVEMEKLDSDESAFIAKAGNPEIGYLKQIA
FDDPDVTLEQEVRKCFVKMDERKAELARAAAELEHDYSDEKVARYTAMEEAFKDDGGYYYEKEYEVMIRKFGFSDDERKK
PIRDFSGGQQTKIAFIKLLLSKPDILLLDEPTNHLDVTTIEWLEGYLKSYPKAVVVVSHDRMFLDNVVDVVYEIEYGTAR
RYPGNYTNFIARKKENYDKQMKDHIAQQKEIERLQRMVTRFKGKPTKTAMAQSKQKAIDRMVIIEAPDKYDNKTFHANFQ
PEKETGNDVLYTSELAIGYDHPLSVVSLDLKRGEKLGILGGNGLGKSTFLKTIVGKIPALSGEYRFGTNVQIGYFDQQMA
MYTSSKTVLDDFWDEYPNLTETEARNALGAFLFSGEDVFKNVNMLSGGEKVRLALCKILKTRPNVLVLDEPTNHMDIVGK
ETLESMLKDYKGTLIFVSHDRYFVKKVATQLLVFEDGTTNLYQFGYEQYQEKLDREAEESKNVYRGNAIFGGAISQNVSS
QTGSDANRSTSQTVAAGNVGESTNANSAAQAGGMAVSSTGKAYYNPGKERSKIQKKVKKAEEDLAVKEAKLDELKAELMK
PEYQSSYSKLTEIQNEIDSLEEEILIDMEAWEELSSQLEALG
>Mature_682_residues
MLYQISNGAVAFGDDVILHSIDFEIRNTEKIAIVGRNGCGKTTLLKLISGEVEMEKLDSDESAFIAKAGNPEIGYLKQIA
FDDPDVTLEQEVRKCFVKMDERKAELARAAAELEHDYSDEKVARYTAMEEAFKDDGGYYYEKEYEVMIRKFGFSDDERKK
PIRDFSGGQQTKIAFIKLLLSKPDILLLDEPTNHLDVTTIEWLEGYLKSYPKAVVVVSHDRMFLDNVVDVVYEIEYGTAR
RYPGNYTNFIARKKENYDKQMKDHIAQQKEIERLQRMVTRFKGKPTKTAMAQSKQKAIDRMVIIEAPDKYDNKTFHANFQ
PEKETGNDVLYTSELAIGYDHPLSVVSLDLKRGEKLGILGGNGLGKSTFLKTIVGKIPALSGEYRFGTNVQIGYFDQQMA
MYTSSKTVLDDFWDEYPNLTETEARNALGAFLFSGEDVFKNVNMLSGGEKVRLALCKILKTRPNVLVLDEPTNHMDIVGK
ETLESMLKDYKGTLIFVSHDRYFVKKVATQLLVFEDGTTNLYQFGYEQYQEKLDREAEESKNVYRGNAIFGGAISQNVSS
QTGSDANRSTSQTVAAGNVGESTNANSAAQAGGMAVSSTGKAYYNPGKERSKIQKKVKKAEEDLAVKEAKLDELKAELMK
PEYQSSYSKLTEIQNEIDSLEEEILIDMEAWEELSSQLEALG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=563, Percent_Identity=31.6163410301954, Blast_Score=262, Evalue=9e-70,
Organism=Homo sapiens, GI27881506, Length=540, Percent_Identity=27.4074074074074, Blast_Score=198, Evalue=2e-50,
Organism=Homo sapiens, GI10947137, Length=556, Percent_Identity=27.158273381295, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=27.8084714548803, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=27.8084714548803, Blast_Score=181, Evalue=2e-45,
Organism=Escherichia coli, GI1789751, Length=675, Percent_Identity=30.6666666666667, Blast_Score=295, Evalue=1e-80,
Organism=Escherichia coli, GI1787041, Length=511, Percent_Identity=32.4853228962818, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI2367384, Length=540, Percent_Identity=32.4074074074074, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1787182, Length=530, Percent_Identity=28.6792452830189, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1788165, Length=212, Percent_Identity=28.7735849056604, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI48994943, Length=527, Percent_Identity=23.719165085389, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788761, Length=205, Percent_Identity=30.2439024390244, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787758, Length=220, Percent_Identity=25.4545454545455, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=178, Percent_Identity=29.7752808988764, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=541, Percent_Identity=30.3142329020333, Blast_Score=231, Evalue=7e-61,
Organism=Caenorhabditis elegans, GI17559834, Length=526, Percent_Identity=28.8973384030418, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17555318, Length=522, Percent_Identity=25.6704980842912, Blast_Score=190, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=28.5191956124314, Blast_Score=223, Evalue=7e-59,
Organism=Saccharomyces cerevisiae, GI6320874, Length=549, Percent_Identity=27.3224043715847, Blast_Score=192, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6323278, Length=417, Percent_Identity=26.378896882494, Blast_Score=132, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6325030, Length=400, Percent_Identity=25.5, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=410, Percent_Identity=26.0975609756098, Blast_Score=117, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24666836, Length=565, Percent_Identity=31.858407079646, Blast_Score=260, Evalue=3e-69,
Organism=Drosophila melanogaster, GI24642252, Length=539, Percent_Identity=27.4582560296846, Blast_Score=223, Evalue=4e-58,
Organism=Drosophila melanogaster, GI18859989, Length=539, Percent_Identity=27.4582560296846, Blast_Score=223, Evalue=4e-58,
Organism=Drosophila melanogaster, GI24641342, Length=543, Percent_Identity=28.7292817679558, Blast_Score=218, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 76863; Mature: 76863

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYQISNGAVAFGDDVILHSIDFEIRNTEKIAIVGRNGCGKTTLLKLISGEVEMEKLDSD
CEEEECCCCEEECCCEEEEEECEEEECCEEEEEEECCCCCHHHHHHHHCCCCHHHHCCCC
ESAFIAKAGNPEIGYLKQIAFDDPDVTLEQEVRKCFVKMDERKAELARAAAELEHDYSDE
CCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
KVARYTAMEEAFKDDGGYYYEKEYEVMIRKFGFSDDERKKPIRDFSGGQQTKIAFIKLLL
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHCCCCHHCCCCCHHHHHHHHHHH
SKPDILLLDEPTNHLDVTTIEWLEGYLKSYPKAVVVVSHDRMFLDNVVDVVYEIEYGTAR
CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEECCCCCC
RYPGNYTNFIARKKENYDKQMKDHIAQQKEIERLQRMVTRFKGKPTKTAMAQSKQKAIDR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCE
MVIIEAPDKYDNKTFHANFQPEKETGNDVLYTSELAIGYDHPLSVVSLDLKRGEKLGILG
EEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEEC
GNGLGKSTFLKTIVGKIPALSGEYRFGTNVQIGYFDQQMAMYTSSKTVLDDFWDEYPNLT
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHCCCCC
ETEARNALGAFLFSGEDVFKNVNMLSGGEKVRLALCKILKTRPNVLVLDEPTNHMDIVGK
HHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCH
ETLESMLKDYKGTLIFVSHDRYFVKKVATQLLVFEDGTTNLYQFGYEQYQEKLDREAEES
HHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
KNVYRGNAIFGGAISQNVSSQTGSDANRSTSQTVAAGNVGESTNANSAAQAGGMAVSSTG
CCEEECCEEECCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCEEEECCC
KAYYNPGKERSKIQKKVKKAEEDLAVKEAKLDELKAELMKPEYQSSYSKLTEIQNEIDSL
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EEEILIDMEAWEELSSQLEALG
HHHHEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLYQISNGAVAFGDDVILHSIDFEIRNTEKIAIVGRNGCGKTTLLKLISGEVEMEKLDSD
CEEEECCCCEEECCCEEEEEECEEEECCEEEEEEECCCCCHHHHHHHHCCCCHHHHCCCC
ESAFIAKAGNPEIGYLKQIAFDDPDVTLEQEVRKCFVKMDERKAELARAAAELEHDYSDE
CCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
KVARYTAMEEAFKDDGGYYYEKEYEVMIRKFGFSDDERKKPIRDFSGGQQTKIAFIKLLL
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHCCCCHHCCCCCHHHHHHHHHHH
SKPDILLLDEPTNHLDVTTIEWLEGYLKSYPKAVVVVSHDRMFLDNVVDVVYEIEYGTAR
CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEECCCCCC
RYPGNYTNFIARKKENYDKQMKDHIAQQKEIERLQRMVTRFKGKPTKTAMAQSKQKAIDR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCE
MVIIEAPDKYDNKTFHANFQPEKETGNDVLYTSELAIGYDHPLSVVSLDLKRGEKLGILG
EEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEEC
GNGLGKSTFLKTIVGKIPALSGEYRFGTNVQIGYFDQQMAMYTSSKTVLDDFWDEYPNLT
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHCCCCC
ETEARNALGAFLFSGEDVFKNVNMLSGGEKVRLALCKILKTRPNVLVLDEPTNHMDIVGK
HHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCH
ETLESMLKDYKGTLIFVSHDRYFVKKVATQLLVFEDGTTNLYQFGYEQYQEKLDREAEES
HHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
KNVYRGNAIFGGAISQNVSSQTGSDANRSTSQTVAAGNVGESTNANSAAQAGGMAVSSTG
CCEEECCEEECCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCEEEECCC
KAYYNPGKERSKIQKKVKKAEEDLAVKEAKLDELKAELMKPEYQSSYSKLTEIQNEIDSL
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EEEILIDMEAWEELSSQLEALG
HHHHEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]