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The map label for this gene is yvyD [H]

Identifier: 238925288

GI number: 238925288

Start: 2823650

End: 2824177

Strand: Reverse

Name: yvyD [H]

Synonym: EUBREC_2942

Alternate gene names: 238925288

Gene position: 2824177-2823650 (Counterclockwise)

Preceding gene: 238925289

Following gene: 238925287

Centisome position: 81.87

GC content: 43.37

Gene sequence:

>528_bases
ATGAGAATAACAATTTCAGGAAAAAACATCGAATTAACAGAGGGGCTTAAGCAGGCAGTAGAGGAGAAGCTGTCAAAGCT
GGAGAAGTTTTTTAAACCGGACACAGACGTATACGTTACACTCAGCGTAGAAAAGGATAGACAGAAAATCGAGGTTACTA
TCCCGGCAAAGGGACATGTTATCCGTTCAGAGCAGGTCAGCAATGATATGTACGTATCAATTGACCTCGTAGAGGAAGTA
ATCGAGAGACAGCTTCGCAAATACAGAACCAAGATTTCCGCAAAGAAGTATGCACCGGCGATATTCCAGGATGATTTCGT
GGAGGCAGACGATGCAGAGGACGAGGAAATCAAGATTGTCCGTACAAAGAGATTTGGTATGAAGCCTATGTATCCTGAGG
ATGCATGCATCCAGATGGAGCTCTCAGGCCACGATTTCTTCGTATTCAGAAATGCAGAGAATGACGAAGTAAATGTAGTC
TACAAGAGAAAAGGACATACATACGGACTTATCGAACCGGAATGTTAG

Upstream 100 bases:

>100_bases
TATAAATTGCATAAAAATGATTGATGAAAACGAAATTTATGGTATAATATTTACATGATACAGACAACGTATCAAATAAA
CGATAAAGGGGTTGGACATC

Downstream 100 bases:

>100_bases
ACTCTTGTTTTTCATCATAATTTAACCTTTCTTTCATCGAAAACCGGCAGCCGTTGGCTGCCGGTTTTTATGTCTGTTTA
ACCTCATTTGGTCTTGGATA

Product: ribosome-associated protein Y (PSrp-1)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MRITISGKNIELTEGLKQAVEEKLSKLEKFFKPDTDVYVTLSVEKDRQKIEVTIPAKGHVIRSEQVSNDMYVSIDLVEEV
IERQLRKYRTKISAKKYAPAIFQDDFVEADDAEDEEIKIVRTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDEVNVV
YKRKGHTYGLIEPEC

Sequences:

>Translated_175_residues
MRITISGKNIELTEGLKQAVEEKLSKLEKFFKPDTDVYVTLSVEKDRQKIEVTIPAKGHVIRSEQVSNDMYVSIDLVEEV
IERQLRKYRTKISAKKYAPAIFQDDFVEADDAEDEEIKIVRTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDEVNVV
YKRKGHTYGLIEPEC
>Mature_175_residues
MRITISGKNIELTEGLKQAVEEKLSKLEKFFKPDTDVYVTLSVEKDRQKIEVTIPAKGHVIRSEQVSNDMYVSIDLVEEV
IERQLRKYRTKISAKKYAPAIFQDDFVEADDAEDEEIKIVRTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDEVNVV
YKRKGHTYGLIEPEC

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=92, Percent_Identity=36.9565217391304, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20343; Mature: 20343

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITISGKNIELTEGLKQAVEEKLSKLEKFFKPDTDVYVTLSVEKDRQKIEVTIPAKGHV
CEEEEECCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCE
IRSEQVSNDMYVSIDLVEEVIERQLRKYRTKISAKKYAPAIFQDDFVEADDAEDEEIKIV
EECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCEEEEE
RTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDEVNVVYKRKGHTYGLIEPEC
EEECCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEECCCEEEEECCCC
>Mature Secondary Structure
MRITISGKNIELTEGLKQAVEEKLSKLEKFFKPDTDVYVTLSVEKDRQKIEVTIPAKGHV
CEEEEECCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCE
IRSEQVSNDMYVSIDLVEEVIERQLRKYRTKISAKKYAPAIFQDDFVEADDAEDEEIKIV
EECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCEEEEE
RTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDEVNVVYKRKGHTYGLIEPEC
EEECCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEECCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]