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The map label for this gene is yhaM [H]

Identifier: 238925259

GI number: 238925259

Start: 2791274

End: 2792218

Strand: Reverse

Name: yhaM [H]

Synonym: EUBREC_2913

Alternate gene names: 238925259

Gene position: 2792218-2791274 (Counterclockwise)

Preceding gene: 238925260

Following gene: 238925258

Centisome position: 80.94

GC content: 46.03

Gene sequence:

>945_bases
ATGAAGTATATTTCAACTCTCCGCGAGGGAGAGAGAATCAATGAGATTTTTTTATGCAAGAGCAAGCAGACAGCCATGAC
CAAAAGCGGAAAGCCTTATGACAATGTTATCCTGCAGGATAAGACAGGTACGCTGGATGCCAAGATATGGGATGTGGGCT
CAGTAGGCATTGAGGAATTTGATGCAATGGATTACATAGCCATAACCGGTGATATCACAAGCTTTCAGGGCAATTTGCAG
TGTTCCATAAAGCGTGCGAGAAAGGTAAACGAGGGAGAATATGACCCTGCGGATTATCTGCCGGTCAGCGATAAGGATGT
CGAGGTCATGTATAAGGAACTCATGGGCTTTATCGGTTCTGTAAAGAATCAGTACCTGTCACAGCTCTTACATAGCTTTT
TTGACAATAAGGAGTTTGAGCGCCGTTTCAAGTTCCATTCAGCAGCAAAGAGCGTGCACCACGGCTTTGTAGGAGGTCTT
TTGGAGCATACACTCGGTGTGACGAAGAACTGTGATTATTTTGCAAAAATGTATCCGGTTTTAAACCGTGACCTGCTTCT
TACAGCAGCTATTTTCCATGATATCGGAAAATTAAAGGAGCTTTCTACTTTCCCGGAAAATGACTATACAGACGCTGGTC
AGCTCCTCGGACATATCATGATCGGTGCAGAGTGGGTAGGCGATGCGATTAAGAGCATCGACGGCTTCCCGGTAGTGCTC
GCAAACGAGCTGAAGCACTGTATACTTGCCCACCACGGCGAGCTTGAGTTTGGCTCTCCGAAAAAGCCGGCACTTGTCGA
GGCACTTGCACTTAGCTTTGCAGACAACATAGATGCCAAGATGGAGACCTTCAGGGAGCTGCTTGTAAATGTGCCTGAAA
ACGATACAAAGTGGCAGGGCTACAACAGATTTATGGAGACAAATTTCCGCAGAACAAGTGTGTAA

Upstream 100 bases:

>100_bases
CTGCAATCTGAAAGTAAAGAGAAAAGGAAGCAACGGCTACACGGAGATTACCTGTCAGGTGAAAATCGGAGTGATGAATT
AGCCGAAATTAGGAGGATAT

Downstream 100 bases:

>100_bases
AAAGGCGGACGATATTAAATATAGCTATGGTGTGATTTTTGGTGTGAAAGCTTGCGCCGGATACAAACATTATAAAGAGT
AATTATATATATAAAATAAA

Product: HD-superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKYISTLREGERINEIFLCKSKQTAMTKSGKPYDNVILQDKTGTLDAKIWDVGSVGIEEFDAMDYIAITGDITSFQGNLQ
CSIKRARKVNEGEYDPADYLPVSDKDVEVMYKELMGFIGSVKNQYLSQLLHSFFDNKEFERRFKFHSAAKSVHHGFVGGL
LEHTLGVTKNCDYFAKMYPVLNRDLLLTAAIFHDIGKLKELSTFPENDYTDAGQLLGHIMIGAEWVGDAIKSIDGFPVVL
ANELKHCILAHHGELEFGSPKKPALVEALALSFADNIDAKMETFRELLVNVPENDTKWQGYNRFMETNFRRTSV

Sequences:

>Translated_314_residues
MKYISTLREGERINEIFLCKSKQTAMTKSGKPYDNVILQDKTGTLDAKIWDVGSVGIEEFDAMDYIAITGDITSFQGNLQ
CSIKRARKVNEGEYDPADYLPVSDKDVEVMYKELMGFIGSVKNQYLSQLLHSFFDNKEFERRFKFHSAAKSVHHGFVGGL
LEHTLGVTKNCDYFAKMYPVLNRDLLLTAAIFHDIGKLKELSTFPENDYTDAGQLLGHIMIGAEWVGDAIKSIDGFPVVL
ANELKHCILAHHGELEFGSPKKPALVEALALSFADNIDAKMETFRELLVNVPENDTKWQGYNRFMETNFRRTSV
>Mature_314_residues
MKYISTLREGERINEIFLCKSKQTAMTKSGKPYDNVILQDKTGTLDAKIWDVGSVGIEEFDAMDYIAITGDITSFQGNLQ
CSIKRARKVNEGEYDPADYLPVSDKDVEVMYKELMGFIGSVKNQYLSQLLHSFFDNKEFERRFKFHSAAKSVHHGFVGGL
LEHTLGVTKNCDYFAKMYPVLNRDLLLTAAIFHDIGKLKELSTFPENDYTDAGQLLGHIMIGAEWVGDAIKSIDGFPVVL
ANELKHCILAHHGELEFGSPKKPALVEALALSFADNIDAKMETFRELLVNVPENDTKWQGYNRFMETNFRRTSV

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35499; Mature: 35499

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYISTLREGERINEIFLCKSKQTAMTKSGKPYDNVILQDKTGTLDAKIWDVGSVGIEEF
CCHHHHHHCCCCCCCEEEECCCCHHHCCCCCCHHCEEEECCCCCCCEEEEECCCCCHHHH
DAMDYIAITGDITSFQGNLQCSIKRARKVNEGEYDPADYLPVSDKDVEVMYKELMGFIGS
CCCCEEEEECCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VKNQYLSQLLHSFFDNKEFERRFKFHSAAKSVHHGFVGGLLEHTLGVTKNCDYFAKMYPV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LNRDLLLTAAIFHDIGKLKELSTFPENDYTDAGQLLGHIMIGAEWVGDAIKSIDGFPVVL
HCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
ANELKHCILAHHGELEFGSPKKPALVEALALSFADNIDAKMETFRELLVNVPENDTKWQG
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHH
YNRFMETNFRRTSV
HHHHHHCCCHHCCC
>Mature Secondary Structure
MKYISTLREGERINEIFLCKSKQTAMTKSGKPYDNVILQDKTGTLDAKIWDVGSVGIEEF
CCHHHHHHCCCCCCCEEEECCCCHHHCCCCCCHHCEEEECCCCCCCEEEEECCCCCHHHH
DAMDYIAITGDITSFQGNLQCSIKRARKVNEGEYDPADYLPVSDKDVEVMYKELMGFIGS
CCCCEEEEECCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VKNQYLSQLLHSFFDNKEFERRFKFHSAAKSVHHGFVGGLLEHTLGVTKNCDYFAKMYPV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LNRDLLLTAAIFHDIGKLKELSTFPENDYTDAGQLLGHIMIGAEWVGDAIKSIDGFPVVL
HCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
ANELKHCILAHHGELEFGSPKKPALVEALALSFADNIDAKMETFRELLVNVPENDTKWQG
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHH
YNRFMETNFRRTSV
HHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA