Click here to switch to the map view.

The map label for this gene is lipO [H]

Identifier: 238925230

GI number: 238925230

Start: 2762709

End: 2764415

Strand: Reverse

Name: lipO [H]

Synonym: EUBREC_2884

Alternate gene names: 238925230

Gene position: 2764415-2762709 (Counterclockwise)

Preceding gene: 238925231

Following gene: 238925229

Centisome position: 80.14

GC content: 41.59

Gene sequence:

>1707_bases
ATGAAGAAAAAACAGTGGATTGCATTTGCATGTGCGATGGCATTAGGTGTGACATCACTGGCAGGATGCGGAAAATCAGA
AGAGAACACACAGAAAAAGGCAGTAGGGGAGGCAGAAGGAACAGCAAAAGAAGATCTCCCGCTGTCAAAATATCCGGAAA
CCGTAACGGTTCATCTGGGCGGTTCAATGAATTCAAATGCCAAGATTCCTGACGGAATGAGCTATGATGACAATTCCTAT
ACACGACTTTTGAAAGAAGACCTTAATATTGAGGTTGCATACGACTGGGTCGCATCATCTACAGACTATGATGAAAAAAT
GAATTTGTGTATCGGAAGTAACACAATTCCGGAATTGATGAACGTAAATGCAACACAGTACAGGGCACTTCTGAAATATG
ATATGATCCAGCCGCTTGATCAGTATTTTGATGACTATGCTTCTGATGCACTGAAAGCATATGTGGAATCAGGTGGAGAA
GAGCTGAAAAAATGTATCTCAAATGATAAGGGAGAGATAATGGCAATCCCGGCTCCAAGTATGATGGGAGGAGAAGTGAA
CGAAATGTGGATCCGTCAGGACTGGCTGGATAATCTTGGACTGGAGGTTCCAAGAACCTGGGATGAAATGGCAGCAGTAG
CAGAGGCATTCGTAACCCAGGATCCGGATGGTAACGGAGAAGCTGATACCATTGGAATTCTTGGACCGAGCAATTCAGAT
CACATGAATGCAATTGGAGCAAACCAGTTTGGACTGGATCCATTGTTTAGCAGCTTCCAGTCTTATCCACAGTACTGGCT
GCAGGATGAGGATGGAACTGTAGAATATGGTTCTATTCAGCCGGAAACCAGAGAGGCACTTGAAAAAATCTCAAAACTGT
ATACAAATAAGCTGATCGATCCGGAAATGCTTGTAAGAAGCGACAGCAAGGAACCTCTTTTGTCCGGAAAAGTTGGTATC
TTCTTTGGACCATGGTGGTCTGGTTATACGGTGTCAGATACTACACTTGCAGGCGAAGCGGATTGGAGAGCATATTTTAC
ACCACTGTCTGAGGACGGGAATTACTACGCTCATATGCCAAATCCTACAAGTAAATATGTAGTAGCAAGCAAAAGCTGCA
AGAACCCGGAGGCTGCATTTAAGATTGTTAACTATCTGATCAAAAATGAGCAGCAGTGGGTAGTAGATGGTATTACCTCC
ACAGAAATGGGTACTGCGGATTTTTATCCTTTGTATAATGGCTACGATAATGCAGATGAGATTGAAGTATCCACTGAGAC
TCTGGAAAAATATCTTGCAGGTGAGATTACAATGGATGATGTTGATTTCTCAAAACATAAACTGTTAAAGAATGATATGG
AAGCAGTTAAGGAACTGAAAAAAGAACCTTATGATGATTTCAGCCTGGACAAATGGAATCTGGACAGTGACATTGCCAAA
ACTAATCTTCCAAGACTTGTGTCACTTTTGGTTGGTGGATCTCCGTTAGTAAATGATAAATATGTACCGGTTTACAATGC
ATATAACGGTCAGACAAAAACCATGGAGGCCAAATGGGCAAACCTTAAAAAAATGGAAGAAGAAACATTCTCAAAGATCA
TTATGGGAAAAGCAGATATCAGCGAATTCGATACTTTCGTTGAAAACTGGAAGAATCAGGGTGGCGACCAGATTCTCAAA
GAAATCAACGATGAATTAAGTAAGTAA

Upstream 100 bases:

>100_bases
TAGCTATGATACCGATACTGATTGTTTACCCATTCCTGCAAAGATTTTTTGTAGAAGGTATTACACTGGGATCAGTAAAA
GGATAAAGGAGGAAGAAAAT

Downstream 100 bases:

>100_bases
AAAAGACAGCGGCTGATGGTGTTCTTCAGCCGCTGTTTTTACGATGGAGGTATAAAATGAGAGAAAACAAAGTAGTTTAC
GGACTAATCGGATATGGCGG

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: Lipoprotein lplA [H]

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MKKKQWIAFACAMALGVTSLAGCGKSEENTQKKAVGEAEGTAKEDLPLSKYPETVTVHLGGSMNSNAKIPDGMSYDDNSY
TRLLKEDLNIEVAYDWVASSTDYDEKMNLCIGSNTIPELMNVNATQYRALLKYDMIQPLDQYFDDYASDALKAYVESGGE
ELKKCISNDKGEIMAIPAPSMMGGEVNEMWIRQDWLDNLGLEVPRTWDEMAAVAEAFVTQDPDGNGEADTIGILGPSNSD
HMNAIGANQFGLDPLFSSFQSYPQYWLQDEDGTVEYGSIQPETREALEKISKLYTNKLIDPEMLVRSDSKEPLLSGKVGI
FFGPWWSGYTVSDTTLAGEADWRAYFTPLSEDGNYYAHMPNPTSKYVVASKSCKNPEAAFKIVNYLIKNEQQWVVDGITS
TEMGTADFYPLYNGYDNADEIEVSTETLEKYLAGEITMDDVDFSKHKLLKNDMEAVKELKKEPYDDFSLDKWNLDSDIAK
TNLPRLVSLLVGGSPLVNDKYVPVYNAYNGQTKTMEAKWANLKKMEEETFSKIIMGKADISEFDTFVENWKNQGGDQILK
EINDELSK

Sequences:

>Translated_568_residues
MKKKQWIAFACAMALGVTSLAGCGKSEENTQKKAVGEAEGTAKEDLPLSKYPETVTVHLGGSMNSNAKIPDGMSYDDNSY
TRLLKEDLNIEVAYDWVASSTDYDEKMNLCIGSNTIPELMNVNATQYRALLKYDMIQPLDQYFDDYASDALKAYVESGGE
ELKKCISNDKGEIMAIPAPSMMGGEVNEMWIRQDWLDNLGLEVPRTWDEMAAVAEAFVTQDPDGNGEADTIGILGPSNSD
HMNAIGANQFGLDPLFSSFQSYPQYWLQDEDGTVEYGSIQPETREALEKISKLYTNKLIDPEMLVRSDSKEPLLSGKVGI
FFGPWWSGYTVSDTTLAGEADWRAYFTPLSEDGNYYAHMPNPTSKYVVASKSCKNPEAAFKIVNYLIKNEQQWVVDGITS
TEMGTADFYPLYNGYDNADEIEVSTETLEKYLAGEITMDDVDFSKHKLLKNDMEAVKELKKEPYDDFSLDKWNLDSDIAK
TNLPRLVSLLVGGSPLVNDKYVPVYNAYNGQTKTMEAKWANLKKMEEETFSKIIMGKADISEFDTFVENWKNQGGDQILK
EINDELSK
>Mature_568_residues
MKKKQWIAFACAMALGVTSLAGCGKSEENTQKKAVGEAEGTAKEDLPLSKYPETVTVHLGGSMNSNAKIPDGMSYDDNSY
TRLLKEDLNIEVAYDWVASSTDYDEKMNLCIGSNTIPELMNVNATQYRALLKYDMIQPLDQYFDDYASDALKAYVESGGE
ELKKCISNDKGEIMAIPAPSMMGGEVNEMWIRQDWLDNLGLEVPRTWDEMAAVAEAFVTQDPDGNGEADTIGILGPSNSD
HMNAIGANQFGLDPLFSSFQSYPQYWLQDEDGTVEYGSIQPETREALEKISKLYTNKLIDPEMLVRSDSKEPLLSGKVGI
FFGPWWSGYTVSDTTLAGEADWRAYFTPLSEDGNYYAHMPNPTSKYVVASKSCKNPEAAFKIVNYLIKNEQQWVVDGITS
TEMGTADFYPLYNGYDNADEIEVSTETLEKYLAGEITMDDVDFSKHKLLKNDMEAVKELKKEPYDDFSLDKWNLDSDIAK
TNLPRLVSLLVGGSPLVNDKYVPVYNAYNGQTKTMEAKWANLKKMEEETFSKIIMGKADISEFDTFVENWKNQGGDQILK
EINDELSK

Specific function: Unknown

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 63581; Mature: 63581

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKQWIAFACAMALGVTSLAGCGKSEENTQKKAVGEAEGTAKEDLPLSKYPETVTVHLG
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC
GSMNSNAKIPDGMSYDDNSYTRLLKEDLNIEVAYDWVASSTDYDEKMNLCIGSNTIPELM
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHHCCEEECCCCCHHHH
NVNATQYRALLKYDMIQPLDQYFDDYASDALKAYVESGGEELKKCISNDKGEIMAIPAPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCC
MMGGEVNEMWIRQDWLDNLGLEVPRTWDEMAAVAEAFVTQDPDGNGEADTIGILGPSNSD
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
HMNAIGANQFGLDPLFSSFQSYPQYWLQDEDGTVEYGSIQPETREALEKISKLYTNKLID
CCCCCCCCCCCCCHHHHHHHHCCHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC
PEMLVRSDSKEPLLSGKVGIFFGPWWSGYTVSDTTLAGEADWRAYFTPLSEDGNYYAHMP
HHHHHHCCCCCCCCCCCEEEEECCCCCCEEECCCEECCCCCCEEEECEECCCCCEEEECC
NPTSKYVVASKSCKNPEAAFKIVNYLIKNEQQWVVDGITSTEMGTADFYPLYNGYDNADE
CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
IEVSTETLEKYLAGEITMDDVDFSKHKLLKNDMEAVKELKKEPYDDFSLDKWNLDSDIAK
EEECHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
TNLPRLVSLLVGGSPLVNDKYVPVYNAYNGQTKTMEAKWANLKKMEEETFSKIIMGKADI
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCH
SEFDTFVENWKNQGGDQILKEINDELSK
HHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKKQWIAFACAMALGVTSLAGCGKSEENTQKKAVGEAEGTAKEDLPLSKYPETVTVHLG
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC
GSMNSNAKIPDGMSYDDNSYTRLLKEDLNIEVAYDWVASSTDYDEKMNLCIGSNTIPELM
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHHCCEEECCCCCHHHH
NVNATQYRALLKYDMIQPLDQYFDDYASDALKAYVESGGEELKKCISNDKGEIMAIPAPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCC
MMGGEVNEMWIRQDWLDNLGLEVPRTWDEMAAVAEAFVTQDPDGNGEADTIGILGPSNSD
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
HMNAIGANQFGLDPLFSSFQSYPQYWLQDEDGTVEYGSIQPETREALEKISKLYTNKLID
CCCCCCCCCCCCCHHHHHHHHCCHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC
PEMLVRSDSKEPLLSGKVGIFFGPWWSGYTVSDTTLAGEADWRAYFTPLSEDGNYYAHMP
HHHHHHCCCCCCCCCCCEEEEECCCCCCEEECCCEECCCCCCEEEECEECCCCCEEEECC
NPTSKYVVASKSCKNPEAAFKIVNYLIKNEQQWVVDGITSTEMGTADFYPLYNGYDNADE
CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
IEVSTETLEKYLAGEITMDDVDFSKHKLLKNDMEAVKELKKEPYDDFSLDKWNLDSDIAK
EEECHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
TNLPRLVSLLVGGSPLVNDKYVPVYNAYNGQTKTMEAKWANLKKMEEETFSKIIMGKADI
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCH
SEFDTFVENWKNQGGDQILKEINDELSK
HHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7921237; 9384377 [H]