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The map label for this gene is ytcP [H]

Identifier: 238925231

GI number: 238925231

Start: 2764430

End: 2765314

Strand: Reverse

Name: ytcP [H]

Synonym: EUBREC_2885

Alternate gene names: 238925231

Gene position: 2765314-2764430 (Counterclockwise)

Preceding gene: 238925232

Following gene: 238925230

Centisome position: 80.16

GC content: 39.32

Gene sequence:

>885_bases
ATGATTGAGAATAAAAGCCTGAGATCAAAGATTTTTGATATTTTAAATATTGTGATTCTCATTGCGATTACTTTAATCTG
TATTGTGCCGGTATGGTACGTTCTCTGCGTGTCATTGAGCAGCAGGGAAGCAGTCAATGCGGGAAAAGTTGCACTTTGGC
CGGTTGGCTTCAACCTGCTCTCCTATAAAAAAATCATGGGAGAGACCGCATTTTTCGGTTCGTTTTTGGTATCTATTAAG
AGAGTTTTGCTGGGAACCGGAATCAGTATGGTATGTATCCTTATGGCAGCATATCCATTATCCAGAACAAAAAAACAGTT
CCCGAAAAGAGATATCTTTATGTGGATATTCGTGTTCTGCATGTTATTTAACGGAGGAACGGTTCCGTGGTATATCACCA
TGAAAAATTATCATCTGATGGATAACATTTTTGGACTGGTACTGGGAACAGGCCTTCAGGTATTTAATGTGATACTTGCA
GTGAATTTCTTTAAAAATCTTCCAACAGAACTGGAAGAGGCGTGTTTTGTCGATGGCGGCGGACCTTGGAGAACTCTGAT
ATCTATCTACATACCATTGGCAAAACCTATGGTCGCAACAGTTGCACTGTTCACCATGGTTATGTACTGGAATGAATTCT
TCCAGGGAATGGTTTTAAGTACAAGACAGAGCAGTTATCCACTGCAGACCTACATCCAGCAGATGGTAGTAACCCTGGAT
TATTCTACAATGAATGTGGATCAGATTGCGCAGGCGATGAAATTAAACAATCTTTCATTAGATTCTGCGAAAATATTTAT
AGCTATGATACCGATACTGATTGTTTACCCATTCCTGCAAAGATTTTTTGTAGAAGGTATTACACTGGGATCAGTAAAAG
GATAA

Upstream 100 bases:

>100_bases
GGTTTATTCAAATCTGTAATCAGTCTTGTATTGATTACGGTTGGCTACTGGCTGGCAGATAAATTTACCGGTTATAAACT
GTTTTAGGAGGTGACAAACT

Downstream 100 bases:

>100_bases
AGGAGGAAGAAAATATGAAGAAAAAACAGTGGATTGCATTTGCATGTGCGATGGCATTAGGTGTGACATCACTGGCAGGA
TGCGGAAAATCAGAAGAGAA

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MIENKSLRSKIFDILNIVILIAITLICIVPVWYVLCVSLSSREAVNAGKVALWPVGFNLLSYKKIMGETAFFGSFLVSIK
RVLLGTGISMVCILMAAYPLSRTKKQFPKRDIFMWIFVFCMLFNGGTVPWYITMKNYHLMDNIFGLVLGTGLQVFNVILA
VNFFKNLPTELEEACFVDGGGPWRTLISIYIPLAKPMVATVALFTMVMYWNEFFQGMVLSTRQSSYPLQTYIQQMVVTLD
YSTMNVDQIAQAMKLNNLSLDSAKIFIAMIPILIVYPFLQRFFVEGITLGSVKG

Sequences:

>Translated_294_residues
MIENKSLRSKIFDILNIVILIAITLICIVPVWYVLCVSLSSREAVNAGKVALWPVGFNLLSYKKIMGETAFFGSFLVSIK
RVLLGTGISMVCILMAAYPLSRTKKQFPKRDIFMWIFVFCMLFNGGTVPWYITMKNYHLMDNIFGLVLGTGLQVFNVILA
VNFFKNLPTELEEACFVDGGGPWRTLISIYIPLAKPMVATVALFTMVMYWNEFFQGMVLSTRQSSYPLQTYIQQMVVTLD
YSTMNVDQIAQAMKLNNLSLDSAKIFIAMIPILIVYPFLQRFFVEGITLGSVKG
>Mature_294_residues
MIENKSLRSKIFDILNIVILIAITLICIVPVWYVLCVSLSSREAVNAGKVALWPVGFNLLSYKKIMGETAFFGSFLVSIK
RVLLGTGISMVCILMAAYPLSRTKKQFPKRDIFMWIFVFCMLFNGGTVPWYITMKNYHLMDNIFGLVLGTGLQVFNVILA
VNFFKNLPTELEEACFVDGGGPWRTLISIYIPLAKPMVATVALFTMVMYWNEFFQGMVLSTRQSSYPLQTYIQQMVVTLD
YSTMNVDQIAQAMKLNNLSLDSAKIFIAMIPILIVYPFLQRFFVEGITLGSVKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=295, Percent_Identity=25.4237288135593, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33229; Mature: 33229

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENKSLRSKIFDILNIVILIAITLICIVPVWYVLCVSLSSREAVNAGKVALWPVGFNLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH
SYKKIMGETAFFGSFLVSIKRVLLGTGISMVCILMAAYPLSRTKKQFPKRDIFMWIFVFC
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH
MLFNGGTVPWYITMKNYHLMDNIFGLVLGTGLQVFNVILAVNFFKNLPTELEEACFVDGG
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
GPWRTLISIYIPLAKPMVATVALFTMVMYWNEFFQGMVLSTRQSSYPLQTYIQQMVVTLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
YSTMNVDQIAQAMKLNNLSLDSAKIFIAMIPILIVYPFLQRFFVEGITLGSVKG
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIENKSLRSKIFDILNIVILIAITLICIVPVWYVLCVSLSSREAVNAGKVALWPVGFNLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH
SYKKIMGETAFFGSFLVSIKRVLLGTGISMVCILMAAYPLSRTKKQFPKRDIFMWIFVFC
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH
MLFNGGTVPWYITMKNYHLMDNIFGLVLGTGLQVFNVILAVNFFKNLPTELEEACFVDGG
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
GPWRTLISIYIPLAKPMVATVALFTMVMYWNEFFQGMVLSTRQSSYPLQTYIQQMVVTLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
YSTMNVDQIAQAMKLNNLSLDSAKIFIAMIPILIVYPFLQRFFVEGITLGSVKG
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]