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The map label for this gene is ycdX [C]

Identifier: 238922385

GI number: 238922385

Start: 589800

End: 590516

Strand: Reverse

Name: ycdX [C]

Synonym: EUBELI_20621

Alternate gene names: 238922385

Gene position: 590516-589800 (Counterclockwise)

Preceding gene: 238922386

Following gene: 238922381

Centisome position: 94.22

GC content: 35.98

Gene sequence:

>717_bases
ATGAAATACACAATAGACACACATACTCATACACTTGTAAGCGGTCATGCATATAACACAATTGATGAGATGGCAGCTTA
CGCAGCAGGTATAGGAGTTACGCACCTTGCGATAACTGACCATGCACCCAAGATGCCGGGAAGCGCAGGTATATTATATT
TTTCTAATATGAAGATAATTCCAAGAGAAAAATGTGGTGTCAGGATATATATGGGTTGTGAAGCTAATATTATGGACTAT
GATGGAAATATTGATCTTAAAGAATATGGACTTAAGGGCTGTGATGTTGTAATAGCAAGCCTTCATATTCCATGTATCAA
GCCCGGAAGTATAGAGCAGAATACGAATGCATTAATTAAAGCAATGGATAATCCATATGTTAATATTATAGGACACCCTG
ATGATTCAAGGTATCCTGTCGATTATGAAAAGCTTGTAAAGGCCGCTAAGGAAAAGCATGTGCTTCTTGAACTTAATAAT
ACATCATTGAATCCGGATGGCCCAAGACAGGGAGCTTTTGAGAATGATGTTAAGATGCTTAACATATGTAAGGAATTAGG
AGTCTGCATATCTATAGGAAGTGATGCACATATAAAAGAGGGAATATGTGAATTTGACAGAGCCTATAAGGTTATAGAAG
ATACACAGTTCCCAGAAGAACTTATTGTTAATAGTGATTACAGTTTATATGAATCATATATTGGAAAGAAGAATTAA

Upstream 100 bases:

>100_bases
ATGACATGTGTATCAACAGCAGTCCTCTGGGAATAGAGAAAACTGTTAATGTTCTGGAGAATTATGTGAAAGAAAGAACA
GGTAATCAGGAGCTTTAATT

Downstream 100 bases:

>100_bases
AATCCATTTTATTTCTATTATGAATTATTAGAATCTTATAAGTTCAACAAGAAATACTGCTACACATGACGCTATAGCAA
CAGTTGTAAGACCTTTGCCT

Product: PHP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKYTIDTHTHTLVSGHAYNTIDEMAAYAAGIGVTHLAITDHAPKMPGSAGILYFSNMKIIPREKCGVRIYMGCEANIMDY
DGNIDLKEYGLKGCDVVIASLHIPCIKPGSIEQNTNALIKAMDNPYVNIIGHPDDSRYPVDYEKLVKAAKEKHVLLELNN
TSLNPDGPRQGAFENDVKMLNICKELGVCISIGSDAHIKEGICEFDRAYKVIEDTQFPEELIVNSDYSLYESYIGKKN

Sequences:

>Translated_238_residues
MKYTIDTHTHTLVSGHAYNTIDEMAAYAAGIGVTHLAITDHAPKMPGSAGILYFSNMKIIPREKCGVRIYMGCEANIMDY
DGNIDLKEYGLKGCDVVIASLHIPCIKPGSIEQNTNALIKAMDNPYVNIIGHPDDSRYPVDYEKLVKAAKEKHVLLELNN
TSLNPDGPRQGAFENDVKMLNICKELGVCISIGSDAHIKEGICEFDRAYKVIEDTQFPEELIVNSDYSLYESYIGKKN
>Mature_238_residues
MKYTIDTHTHTLVSGHAYNTIDEMAAYAAGIGVTHLAITDHAPKMPGSAGILYFSNMKIIPREKCGVRIYMGCEANIMDY
DGNIDLKEYGLKGCDVVIASLHIPCIKPGSIEQNTNALIKAMDNPYVNIIGHPDDSRYPVDYEKLVKAAKEKHVLLELNN
TSLNPDGPRQGAFENDVKMLNICKELGVCISIGSDAHIKEGICEFDRAYKVIEDTQFPEELIVNSDYSLYESYIGKKN

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=222, Percent_Identity=35.5855855855856, Blast_Score=137, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 26391; Mature: 26391

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYTIDTHTHTLVSGHAYNTIDEMAAYAAGIGVTHLAITDHAPKMPGSAGILYFSNMKII
CEEEECCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECEEEE
PREKCGVRIYMGCEANIMDYDGNIDLKEYGLKGCDVVIASLHIPCIKPGSIEQNTNALIK
ECCCCCEEEEECCCCEEEECCCCCCHHHHCCCCHHEEEEEEECCCCCCCCCCCCCCHHEE
AMDNPYVNIIGHPDDSRYPVDYEKLVKAAKEKHVLLELNNTSLNPDGPRQGAFENDVKML
ECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHH
NICKELGVCISIGSDAHIKEGICEFDRAYKVIEDTQFPEELIVNSDYSLYESYIGKKN
HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MKYTIDTHTHTLVSGHAYNTIDEMAAYAAGIGVTHLAITDHAPKMPGSAGILYFSNMKII
CEEEECCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECEEEE
PREKCGVRIYMGCEANIMDYDGNIDLKEYGLKGCDVVIASLHIPCIKPGSIEQNTNALIK
ECCCCCEEEEECCCCEEEECCCCCCHHHHCCCCHHEEEEEEECCCCCCCCCCCCCCHHEE
AMDNPYVNIIGHPDDSRYPVDYEKLVKAAKEKHVLLELNNTSLNPDGPRQGAFENDVKML
ECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHH
NICKELGVCISIGSDAHIKEGICEFDRAYKVIEDTQFPEELIVNSDYSLYESYIGKKN
HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA