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The map label for this gene is rpe [H]

Identifier: 238921468

GI number: 238921468

Start: 3506988

End: 3507665

Strand: Reverse

Name: rpe [H]

Synonym: NT01EI_3620

Alternate gene names: 238921468

Gene position: 3507665-3506988 (Counterclockwise)

Preceding gene: 238921469

Following gene: 238921467

Centisome position: 92.01

GC content: 56.78

Gene sequence:

>678_bases
ATGAACCCGTATTTAATTGCCCCGTCGATTTTGTCCGCAGACTTTGCCCGGCTGGGCGAAGATACTGCCAAGGTGTTGGC
CGCCGGTGCCGATGTGGTGCACTTTGATGTCATGGATAACCACTATGTGCCGAATTTGACCATTGGTCCGATGGTCTGCA
AAGCGCTACGGGAGTATGGCATCACCGCTCCGATCGATGTTCACCTGATGGTGAAGCCGGTCGATCGGATTATCCCGGAT
TTTGCTGATGCCGGCGCCAGCATTATTACCTTCCATCCGGAGGCATCGGATCACGTCGATCGCACTCTGCAGCTGATCCG
CGCCTGTGGCTGTAAGGCGGGGCTGGTTCTGAACCCAGCCACGCCGCTGAGCTGTCTGGATTACGTGATGGATCGCCTCG
ATACCATCCTGCTGATGTCCGTAAATCCGGGCTTTGGCGGCCAGTCCTTTATTCCGTCGACCCTCGATAAGCTGCGTCAG
GTGCGTCAGCGTATTGATGCCAGCGGTCTGGATATTCGCCTGGAGGTTGACGGTGGCGTGAAGGTGGACAATATCGGTGC
TATCGCGGCGGCTGGCGCCGATATGTTTGTTGCCGGCTCGGCTATTTTCGGTCACGCCGACTATGCGGCGGTGATCACGG
ATATGCGTCATGAGATTGCGCAGGCCTGCCATGAATAA

Upstream 100 bases:

>100_bases
CAGCAGAAAAACTGACGGGCGCAGCAAAGTGAACGAATTATTGGCGCTGTACGGCAAGCGCTGAGCGCGGTCGTCAGCCC
CCCGAGCCCAGGAGAAACGG

Downstream 100 bases:

>100_bases
AGGTATTCCGGTACAGGCACTGGCCTTTGATTTGGACGGCACGCTGGTGGATAGCGCGTCGGGTCTGGCGGCGGCTACGG
ACGCGGCGATGCTGGCGCTG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNPYLIAPSILSADFARLGEDTAKVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALREYGITAPIDVHLMVKPVDRIIPD
FADAGASIITFHPEASDHVDRTLQLIRACGCKAGLVLNPATPLSCLDYVMDRLDTILLMSVNPGFGGQSFIPSTLDKLRQ
VRQRIDASGLDIRLEVDGGVKVDNIGAIAAAGADMFVAGSAIFGHADYAAVITDMRHEIAQACHE

Sequences:

>Translated_225_residues
MNPYLIAPSILSADFARLGEDTAKVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALREYGITAPIDVHLMVKPVDRIIPD
FADAGASIITFHPEASDHVDRTLQLIRACGCKAGLVLNPATPLSCLDYVMDRLDTILLMSVNPGFGGQSFIPSTLDKLRQ
VRQRIDASGLDIRLEVDGGVKVDNIGAIAAAGADMFVAGSAIFGHADYAAVITDMRHEIAQACHE
>Mature_225_residues
MNPYLIAPSILSADFARLGEDTAKVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALREYGITAPIDVHLMVKPVDRIIPD
FADAGASIITFHPEASDHVDRTLQLIRACGCKAGLVLNPATPLSCLDYVMDRLDTILLMSVNPGFGGQSFIPSTLDKLRQ
VRQRIDASGLDIRLEVDGGVKVDNIGAIAAAGADMFVAGSAIFGHADYAAVITDMRHEIAQACHE

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=221, Percent_Identity=39.8190045248869, Blast_Score=154, Evalue=8e-38,
Organism=Homo sapiens, GI219879828, Length=221, Percent_Identity=38.4615384615385, Blast_Score=144, Evalue=8e-35,
Organism=Homo sapiens, GI24307923, Length=177, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=7e-19,
Organism=Escherichia coli, GI1789788, Length=225, Percent_Identity=84.4444444444444, Blast_Score=390, Evalue=1e-110,
Organism=Escherichia coli, GI1790523, Length=204, Percent_Identity=39.2156862745098, Blast_Score=153, Evalue=7e-39,
Organism=Escherichia coli, GI1790754, Length=208, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=226, Percent_Identity=40.7079646017699, Blast_Score=162, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=38.4279475982533, Blast_Score=156, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=41.2322274881517, Blast_Score=160, Evalue=8e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24067; Mature: 24067

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPYLIAPSILSADFARLGEDTAKVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALREYG
CCCEEECHHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIIPDFADAGASIITFHPEASDHVDRTLQLIRACGCKAGLVLNPA
CCCCEEEEEEECCHHHHCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC
TPLSCLDYVMDRLDTILLMSVNPGFGGQSFIPSTLDKLRQVRQRIDASGLDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCE
KVDNIGAIAAAGADMFVAGSAIFGHADYAAVITDMRHEIAQACHE
EECCCCHHHHCCCCCEEECCHHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPYLIAPSILSADFARLGEDTAKVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALREYG
CCCEEECHHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIIPDFADAGASIITFHPEASDHVDRTLQLIRACGCKAGLVLNPA
CCCCEEEEEEECCHHHHCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC
TPLSCLDYVMDRLDTILLMSVNPGFGGQSFIPSTLDKLRQVRQRIDASGLDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCE
KVDNIGAIAAAGADMFVAGSAIFGHADYAAVITDMRHEIAQACHE
EECCCCHHHHCCCCCEEECCHHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]