Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is ywbG [H]
Identifier: 238921368
GI number: 238921368
Start: 3405384
End: 3406073
Strand: Reverse
Name: ywbG [H]
Synonym: NT01EI_3512
Alternate gene names: 238921368
Gene position: 3406073-3405384 (Counterclockwise)
Preceding gene: 238921369
Following gene: 238921365
Centisome position: 89.34
GC content: 64.06
Gene sequence:
>690_bases ATGAGCGATCTGGGGATCGGCATGCTGTGTCTGGCAGTGACGCTGGCGCTCTACTTCGCCAATAAGCAGCTGTACCGTCG GGTTCACCGTATCTGGCTGATGCCGCTGGTGCTGACGCCGCTGTTGTTGGTCGCGCTGCTGCTGATCGGGCATATCTCCT ACCGCGAGTACATGGGAGAGAGCCACTGGCTGCTGTGGCTGCTGGGACCGGCGACCATCGCCTTTGCCGTACCGGTGTAT GAGAACCTGGCGATTATCCGCCGTCACTGGCTGTCGTTGACGGTCGGTGTACTGACCTCGACGCTGGTGGCGGTGCTCAG CTCGGTGTGGCTGGCGCGGCTGCTGACCCTGCCGGAAAGTATTCAGCGTAGCCTGGCAGTACGGTCGATTACCACGCCAT TCGCCATTGAGGCGGCCAAGCGCCTGGGGGGACAGCCGGATCTGGTGGCGCTGTTCGTGGTGCTGACCGGGGTGTTTGGT ATGGCGGTGGGAGACATGCTGCTGCTGCGTCTCTCTGTGCGCAGCGGCATGGCCAAGGGCGCCGGGCTCGGCGCATCGTC CCACGGCGCCGGAACGGCCAAGGCCTATGAGATGGGGCAGACCGAAGGCGTTGTCTCCAGCCTGGTGATGATGCTGGCCG GCGTGGTGACAGTGCTGCTTTCGCCGCTAATCGGCCGCCTGCTGTGGTAG
Upstream 100 bases:
>100_bases TGAGCACCCTGTTAACGCTGGGGATGACGGCGCTGGTGGTGGATAGAGTCTACCGGCTGGAGCTGTGGCTACAGCGGCGC CGCGCCGGGGTGGTGCGCTG
Downstream 100 bases:
>100_bases GGATCGCTCAGGGAAACATCTGCGCCAGATAGTGATTCAAACGTTCGCGCGAGGTAAAGCCGTGGGGAACACCGATAAAA GCCGGTGACGCGGCGTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MSDLGIGMLCLAVTLALYFANKQLYRRVHRIWLMPLVLTPLLLVALLLIGHISYREYMGESHWLLWLLGPATIAFAVPVY ENLAIIRRHWLSLTVGVLTSTLVAVLSSVWLARLLTLPESIQRSLAVRSITTPFAIEAAKRLGGQPDLVALFVVLTGVFG MAVGDMLLLRLSVRSGMAKGAGLGASSHGAGTAKAYEMGQTEGVVSSLVMMLAGVVTVLLSPLIGRLLW
Sequences:
>Translated_229_residues MSDLGIGMLCLAVTLALYFANKQLYRRVHRIWLMPLVLTPLLLVALLLIGHISYREYMGESHWLLWLLGPATIAFAVPVY ENLAIIRRHWLSLTVGVLTSTLVAVLSSVWLARLLTLPESIQRSLAVRSITTPFAIEAAKRLGGQPDLVALFVVLTGVFG MAVGDMLLLRLSVRSGMAKGAGLGASSHGAGTAKAYEMGQTEGVVSSLVMMLAGVVTVLLSPLIGRLLW >Mature_228_residues SDLGIGMLCLAVTLALYFANKQLYRRVHRIWLMPLVLTPLLLVALLLIGHISYREYMGESHWLLWLLGPATIAFAVPVYE NLAIIRRHWLSLTVGVLTSTLVAVLSSVWLARLLTLPESIQRSLAVRSITTPFAIEAAKRLGGQPDLVALFVVLTGVFGM AVGDMLLLRLSVRSGMAKGAGLGASSHGAGTAKAYEMGQTEGVVSSLVMMLAGVVTVLLSPLIGRLLW
Specific function: Unknown
COG id: COG1346
COG function: function code M; Putative effector of murein hydrolase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]
Homologues:
Organism=Escherichia coli, GI1788464, Length=214, Percent_Identity=33.6448598130841, Blast_Score=125, Evalue=2e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005261 - InterPro: IPR007300 [H]
Pfam domain/function: PF04172 LrgB [H]
EC number: NA
Molecular weight: Translated: 24718; Mature: 24587
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLGIGMLCLAVTLALYFANKQLYRRVHRIWLMPLVLTPLLLVALLLIGHISYREYMGE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SHWLLWLLGPATIAFAVPVYENLAIIRRHWLSLTVGVLTSTLVAVLSSVWLARLLTLPES CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH IQRSLAVRSITTPFAIEAAKRLGGQPDLVALFVVLTGVFGMAVGDMLLLRLSVRSGMAKG HHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AGLGASSHGAGTAKAYEMGQTEGVVSSLVMMLAGVVTVLLSPLIGRLLW CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDLGIGMLCLAVTLALYFANKQLYRRVHRIWLMPLVLTPLLLVALLLIGHISYREYMGE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SHWLLWLLGPATIAFAVPVYENLAIIRRHWLSLTVGVLTSTLVAVLSSVWLARLLTLPES CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH IQRSLAVRSITTPFAIEAAKRLGGQPDLVALFVVLTGVFGMAVGDMLLLRLSVRSGMAKG HHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AGLGASSHGAGTAKAYEMGQTEGVVSSLVMMLAGVVTVLLSPLIGRLLW CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]