Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921326
Identifier: 238921326
GI number: 238921326
Start: 3363893
End: 3364513
Strand: Reverse
Name: 238921326
Synonym: NT01EI_3470
Alternate gene names: NA
Gene position: 3364513-3363893 (Counterclockwise)
Preceding gene: 238921332
Following gene: 238921322
Centisome position: 88.25
GC content: 65.7
Gene sequence:
>621_bases TTGTGTTGTCTCTGTTTCTGTTGGTTGCTTTCCGGCTGCGCCCAAGCGGGCGATACCGATGCGCGGATGCTGACCGTGCG CGGCACCCTGAGTGCCGTTTCGCCCGATGCGCTGCAGCTGCGCGAGCGTCACGGTGGAGAGCTGATGCTGAGGATGACCC CCGCAACGCGCCTGTTCGGGGTGTTCAGCGCATCGCTGGACGATATCCGTCCCGGCGCATTTCTGGGGGCGGTGGCGCTG CCGCTGGCGGATGGTACGCTGGAGGCTCAGACACTTCACCTGTTCTCCGATCGTCTGCGTGGCGCGGGCGAGGGACATAC CCCCTGGCGGCTGGTCAGCGGTGAACAGGGCAGTATGACCAACGGCACCGTCGATGTCGGGGGAACCTGGCGCGGAGACG GCGATGTGGCGGGACAGCCGTTGGTATTACGCTATGGTGGGGGGACGCAGCAGATTAGGGTCGGCCTGCAGACACCGGTG GTGTTTGTGGATTCACTCACGCGCGGCGCGCTGCGGCCGGGGCAGGCAGCGGTGCTGATCCTGACGGTACGCGAAGGGCG CGCTACGGCGGAGGTGCTGCGCGCCTTTGTCGGCATTAACGGGGTGATTCCGCCCTTTTAA
Upstream 100 bases:
>100_bases CTGTTATCGCCGTGCGCACCACCGTATGCTGGAAAGATCGGCGCGTGGCCACCGTGGGTCAGCGCTACGACTCAAGGAGG AGATCATGGGATATCGGATA
Downstream 100 bases:
>100_bases ACCCTACCCCGCCGCGGAGATCCGGGGGCATGTGCCCCGGTTGCTCCGGCTTACTGATGCTGTCCCTGCCTTTGCAGGAA CTGTACGCCCTTGTCCGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MCCLCFCWLLSGCAQAGDTDARMLTVRGTLSAVSPDALQLRERHGGELMLRMTPATRLFGVFSASLDDIRPGAFLGAVAL PLADGTLEAQTLHLFSDRLRGAGEGHTPWRLVSGEQGSMTNGTVDVGGTWRGDGDVAGQPLVLRYGGGTQQIRVGLQTPV VFVDSLTRGALRPGQAAVLILTVREGRATAEVLRAFVGINGVIPPF
Sequences:
>Translated_206_residues MCCLCFCWLLSGCAQAGDTDARMLTVRGTLSAVSPDALQLRERHGGELMLRMTPATRLFGVFSASLDDIRPGAFLGAVAL PLADGTLEAQTLHLFSDRLRGAGEGHTPWRLVSGEQGSMTNGTVDVGGTWRGDGDVAGQPLVLRYGGGTQQIRVGLQTPV VFVDSLTRGALRPGQAAVLILTVREGRATAEVLRAFVGINGVIPPF >Mature_206_residues MCCLCFCWLLSGCAQAGDTDARMLTVRGTLSAVSPDALQLRERHGGELMLRMTPATRLFGVFSASLDDIRPGAFLGAVAL PLADGTLEAQTLHLFSDRLRGAGEGHTPWRLVSGEQGSMTNGTVDVGGTWRGDGDVAGQPLVLRYGGGTQQIRVGLQTPV VFVDSLTRGALRPGQAAVLILTVREGRATAEVLRAFVGINGVIPPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21717; Mature: 21717
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCCLCFCWLLSGCAQAGDTDARMLTVRGTLSAVSPDALQLRERHGGELMLRMTPATRLFG CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHH VFSASLDDIRPGAFLGAVALPLADGTLEAQTLHLFSDRLRGAGEGHTPWRLVSGEQGSMT HHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC NGTVDVGGTWRGDGDVAGQPLVLRYGGGTQQIRVGLQTPVVFVDSLTRGALRPGQAAVLI CCEEECCCEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEHHHHCCCCCCCEEEEE LTVREGRATAEVLRAFVGINGVIPPF EEECCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MCCLCFCWLLSGCAQAGDTDARMLTVRGTLSAVSPDALQLRERHGGELMLRMTPATRLFG CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHH VFSASLDDIRPGAFLGAVALPLADGTLEAQTLHLFSDRLRGAGEGHTPWRLVSGEQGSMT HHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC NGTVDVGGTWRGDGDVAGQPLVLRYGGGTQQIRVGLQTPVVFVDSLTRGALRPGQAAVLI CCEEECCCEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEHHHHCCCCCCCEEEEE LTVREGRATAEVLRAFVGINGVIPPF EEECCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA