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The map label for this gene is rraB [H]

Identifier: 238921317

GI number: 238921317

Start: 3354382

End: 3354813

Strand: Reverse

Name: rraB [H]

Synonym: NT01EI_3461

Alternate gene names: 238921317

Gene position: 3354813-3354382 (Counterclockwise)

Preceding gene: 238921319

Following gene: 238921310

Centisome position: 88.0

GC content: 59.72

Gene sequence:

>432_bases
ATGGCAAACCGAGAGCTGCTGGAAGAACAGCGTGAAGAGACCCGCATGATTATCGAGGAGCTGCTGGACGATGGCAGCGA
TCCGGATGCGCTGTACACCATTGAGCACCATCTGTCGGCGGAGAGCTTTGAGGCGCTGGAGCAGGCCGCCGTGGAGGCGT
TCAAGCTGGGTTACGAAGTGACCGATGCTGAGGAGCTGGAGGTTGAAGAGGGCATCCTGCTGATGTGCTGTGATGTGATA
AGCGAAGTGGGTCTGAACGCCGAGATCATCGACGCCCAGGTCGAGCAGCTGATCGCCCTGGCGGAAAAACACGACGTCAG
CTACGACGGCTGGGGAACCTATTTTGAGGATCCGGACGGCGAAGAGGGTGACGACGGCGAGGAGTACGACAACGAGGCGA
TCGACGAGGACGACGACGGTCGTCGCCACTGA

Upstream 100 bases:

>100_bases
TTTCAACCCCCGAGCGTGAAATATTGTCTTTTCTTGAGTGGTGAGGCGCCGTCGCCTGTGGGAGAATGCGTCAAAGGCTT
AGCGATTGAGGATCAGTGAA

Downstream 100 bases:

>100_bases
GATCGACACCGATCGTGATCGTGCTGACGGGAGCCTGTGGGCTCCTGTTTTTTTGCCCCACGTAAGCGCCCCTGCCAGAC
AGGGTGCATCCAGCATTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MANRELLEEQREETRMIIEELLDDGSDPDALYTIEHHLSAESFEALEQAAVEAFKLGYEVTDAEELEVEEGILLMCCDVI
SEVGLNAEIIDAQVEQLIALAEKHDVSYDGWGTYFEDPDGEEGDDGEEYDNEAIDEDDDGRRH

Sequences:

>Translated_143_residues
MANRELLEEQREETRMIIEELLDDGSDPDALYTIEHHLSAESFEALEQAAVEAFKLGYEVTDAEELEVEEGILLMCCDVI
SEVGLNAEIIDAQVEQLIALAEKHDVSYDGWGTYFEDPDGEEGDDGEEYDNEAIDEDDDGRRH
>Mature_142_residues
ANRELLEEQREETRMIIEELLDDGSDPDALYTIEHHLSAESFEALEQAAVEAFKLGYEVTDAEELEVEEGILLMCCDVIS
EVGLNAEIIDAQVEQLIALAEKHDVSYDGWGTYFEDPDGEEGDDGEEYDNEAIDEDDDGRRH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=120, Percent_Identity=78.3333333333333, Blast_Score=192, Evalue=8e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 16143; Mature: 16012

Theoretical pI: Translated: 3.53; Mature: 3.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRELLEEQREETRMIIEELLDDGSDPDALYTIEHHLSAESFEALEQAAVEAFKLGYEV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHCCCC
TDAEELEVEEGILLMCCDVISEVGLNAEIIDAQVEQLIALAEKHDVSYDGWGTYFEDPDG
CCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
EEGDDGEEYDNEAIDEDDDGRRH
CCCCCCCHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANRELLEEQREETRMIIEELLDDGSDPDALYTIEHHLSAESFEALEQAAVEAFKLGYEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHCCCC
TDAEELEVEEGILLMCCDVISEVGLNAEIIDAQVEQLIALAEKHDVSYDGWGTYFEDPDG
CCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
EEGDDGEEYDNEAIDEDDDGRRH
CCCCCCCHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA